RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 HNRNPLLQ8WVV9 542 aaKnown RBP12.06□□□□□ -0.48
VPS4A-201ENST00000254950 WNT8BQ93098 351 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 SCLYQ96I15 445 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 FAM129AQ9BZQ8 928 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 HAPLN2Q9GZV7 340 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 KIF9Q9HAQ2 790 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 CNGB3Q9NQW8 809 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 ENTPD7Q9NQZ7 604 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 SMAPO00193 183 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 APRTP07741 180 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 RARAP10276 462 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 FGFR1P11362 822 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 UNGP13051 313 aaPredicted RBP12.06□□□□□ -0.48
VPS4A-201ENST00000254950 WARSP23381 471 aaKnown RBP12.06□□□□□ -0.48
VPS4A-201ENST00000254950 EPHB3P54753 998 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 USP41Q3LFD5 358 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 MARCH8Q5T0T0 291 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 C4orf22Q6V702 233 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 MGARPQ8TDB4 240 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 NT5C1B-RDH14C9J2C7 533 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 NDUFAB1O14561 156 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 ALDH3A1P30838 453 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 HOXA11P31270 313 aaPredicted RBP12.05□□□□□ -0.48
VPS4A-201ENST00000254950 CCR1P32246 355 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 CYP2C18P33260 490 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 MARCKSL1P49006 195 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 PDE1BQ01064 536 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 SOWAHAQ2M3V2 549 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 ARHGAP17Q68EM7 881 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 ZBED8Q8IZ13 594 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 FAM71DQ8N9W8 422 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 ATP11CQ8NB49 1132 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 LRRN4CLQ8ND94 238 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 MRPS31Q92665 395 aaKnown RBP12.05□□□□□ -0.48
VPS4A-201ENST00000254950 FSD1LQ9BXM9 530 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 BCO2Q9BYV7 579 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 AGO3Q9H9G7 860 aaKnown RBP12.05□□□□□ -0.48
VPS4A-201ENST00000254950 ARFGEF1Q9Y6D6 1849 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 SLC12A8A0AV02 714 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 ERBB2P04626 1255 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 SLC11A2P49281 568 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 TMED2Q15363 201 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 ANO4Q32M45 955 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 JOSD2Q8TAC2 188 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 MYCBPAPQ8TBZ2 947 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 STK32AQ8WU08 396 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 SMC6Q96SB8 1091 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 TMEM51Q9NW97 253 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 NOVA2Q9UNW9 492 aaKnown RBP12.05□□□□□ -0.48
VPS4A-201ENST00000254950 HMGB1P1B2RPK0 211 aaPredicted RBP12.05□□□□□ -0.48
VPS4A-201ENST00000254950 F5H423 210 aaPredicted RBP12.05□□□□□ -0.48
VPS4A-201ENST00000254950 PPEF2O14830 753 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 PFDN6O15212 129 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 STAU1O95793 577 aaKnown RBP12.05□□□□□ -0.48
VPS4A-201ENST00000254950 COL6A1P12109 1028 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 PPM1AP35813 382 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 HADHBP55084 474 aaKnown RBP12.05□□□□□ -0.48
VPS4A-201ENST00000254950 SEPT6Q14141 434 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 POLNQ7Z5Q5 900 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 TMEM174Q8WUU8 243 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 TMEM40Q8WWA1 233 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 CASKIN2Q8WXE0 1202 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 TBC1D31Q96DN5 1066 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 RBM15Q96T37 977 aaKnown RBP eCLIP12.05□□□□□ -0.483e-7■■■■■ 37.4
VPS4A-201ENST00000254950 HNRNPABQ99729 332 aaKnown RBP12.05□□□□□ -0.48
VPS4A-201ENST00000254950 TBK1Q9UHD2 729 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 ADAM28Q9UKQ2 775 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 EBAG9O00559 213 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 FAM163BP0C2L3 166 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 CYP2F1P24903 491 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 CST5P28325 142 aaPredicted RBP12.05□□□□□ -0.48
VPS4A-201ENST00000254950 EPHB1P54762 984 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 CLDN10P78369 228 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 ZNF235Q14590 738 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 DENND5BQ6ZUT9 1274 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 LRRC57Q8N9N7 239 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 TRPV1Q8NER1 839 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 FNIP1Q8TF40 1166 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 TFB1MQ8WVM0 346 aaKnown RBP12.05□□□□□ -0.48
VPS4A-201ENST00000254950 ALG3Q92685 438 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 SERPINB11Q96P15 392 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 ACBD6Q9BR61 282 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 TTPALQ9BTX7 342 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 DCLK3Q9C098 648 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 XYLT2Q9H1B5 865 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 UPF3AQ9H1J1 476 aaKnown RBP12.05□□□□□ -0.48
VPS4A-201ENST00000254950 ERVK-5Q9HDB9 667 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 OLA1Q9NTK5 396 aaKnown RBP12.05□□□□□ -0.48
VPS4A-201ENST00000254950 COG5Q9UP83 839 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 SLC8A2Q9UPR5 921 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 FOCADQ5VW36 1801 aa12.05□□□□□ -0.48
VPS4A-201ENST00000254950 SMCHD1A6NHR9 2005 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 ZNF623O75123 536 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 MTA2O94776 668 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 IQCF3P0C7M6 154 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 TYMPP19971 482 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 PCK1P35558 622 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 ITGA8P53708 1063 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 VCPP55072 806 aaKnown RBP12.04□□□□□ -0.48
VPS4A-201ENST00000254950 MRPS5P82675 430 aaKnown RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms