RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 RFPL2O75678 378 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 C4BPAP04003 597 aaKnown RBP9.08□□□□□ -0.96
VPS4B-201ENST00000238497 TCF4P15884 667 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 PSMD6Q15008 389 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 NFIL3Q16649 462 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 CLEC16AQ2KHT3 1053 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 ZNF667Q5HYK9 610 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 PRELID2Q8N945 189 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 MDM1Q8TC05 714 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 C18orf25Q96B23 403 aaPredicted RBP9.08□□□□□ -0.96
VPS4B-201ENST00000238497 RIPOR3Q96MK2 946 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 TTPALQ9BTX7 342 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 PHF7Q9BWX1 381 aaPredicted RBP9.08□□□□□ -0.96
VPS4B-201ENST00000238497 KCNK9Q9NPC2 374 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 GDF3Q9NR23 364 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 FAM49BQ9NUQ9 324 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 CALCOCO1Q9P1Z2 691 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 GTF3C4Q9UKN8 822 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 INTUQ9ULD6 942 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 SSX2IPQ9Y2D8 614 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 COL4A6Q14031 1691 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 PIEZO1Q92508 2521 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 MYO10Q9HD67 2058 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 OGTO15294 1046 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 DCXO43602 365 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 NFICP08651 508 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 CLTAP09496 248 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 MCF2P10911 925 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 RFX1P22670 979 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 GBP2P32456 591 aaPredicted RBP9.08□□□□□ -0.96
VPS4B-201ENST00000238497 GRM5P41594 1212 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 BPIFB4P59827 614 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 MAGOHP61326 146 aaKnown RBP9.08□□□□□ -0.96
VPS4B-201ENST00000238497 PSMD5Q16401 504 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 TMEM31Q5JXX7 168 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 RTP2Q5QGT7 225 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 SLC13A5Q86YT5 568 aaPredicted RBP9.08□□□□□ -0.96
VPS4B-201ENST00000238497 ERP44Q9BS26 406 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 TSPYL1Q9H0U9 437 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 CARD9Q9H257 536 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 SEMA4AQ9H3S1 761 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 CWC15Q9P013 229 aaKnown RBP9.08□□□□□ -0.96
VPS4B-201ENST00000238497 A0A0A6YYK5 440 aaPredicted RBP9.08□□□□□ -0.96
VPS4B-201ENST00000238497 F5H423 210 aaPredicted RBP9.08□□□□□ -0.96
VPS4B-201ENST00000238497 TRAPPC3O43617 180 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 KRT1P04264 644 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 PDGFRBP09619 1106 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 ALADP13716 330 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 NR1D1P20393 614 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 ATP11AP98196 1134 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 SLC29A2Q14542 456 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 SMAD1Q15797 465 aaKnown RBP9.08□□□□□ -0.96
VPS4B-201ENST00000238497 UBAP2Q5T6F2 1119 aaKnown RBP9.08□□□□□ -0.96
VPS4B-201ENST00000238497 DENND2CQ68D51 928 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 TTC27Q6P3X3 843 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 RNF135Q8IUD6 432 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 C12orf56Q8IXR9 622 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 WHAMMQ8TF30 809 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 DYDC1Q8WWB3 177 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 HSPH1Q92598 858 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 C1QTNF1Q9BXJ1 281 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 CALN1Q9BXU9 219 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 ADAM7Q9H2U9 754 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 LRRC4CQ9HCJ2 640 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 SLC38A7Q9NVC3 462 aa9.08□□□□□ -0.96
VPS4B-201ENST00000238497 MTRF1LQ9UGC7 380 aaKnown RBP9.08□□□□□ -0.96
VPS4B-201ENST00000238497 MIF4GDA9UHW6 222 aaKnown RBP9.07□□□□□ -0.96
VPS4B-201ENST00000238497 PODXLO00592 558 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 ECEL1O95672 775 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 SHBGP04278 402 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 GZMAP12544 262 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 IGFBP6P24592 240 aaPredicted RBP9.07□□□□□ -0.96
VPS4B-201ENST00000238497 POLR2BP30876 1174 aaKnown RBP9.07□□□□□ -0.96
VPS4B-201ENST00000238497 OR1D2P34982 312 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 CETN2P41208 172 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 RPL21P46778 160 aaKnown RBP9.07□□□□□ -0.96
VPS4B-201ENST00000238497 TAS2R40P59535 323 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 CCDC149Q6ZUS6 474 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 ZDHHC14Q8IZN3 488 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 ANKRD42Q8N9B4 389 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 SMG7Q92540 1137 aaKnown RBP9.07□□□□□ -0.96
VPS4B-201ENST00000238497 MIS12Q9H081 205 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 ST6GALNAC4Q9H4F1 302 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 POMKQ9H5K3 350 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 PRKAG3Q9UGI9 489 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 RALGAPA2Q2PPJ7 1873 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 CCDC195A0A1B0GUA6 201 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 LACTBL1A8MY62 500 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 GOLGA8KD6RF30 607 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 ZSCAN5DPP0CG00 497 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 ELAVL2Q12926 359 aaKnown RBP9.07□□□□□ -0.96
VPS4B-201ENST00000238497 ALS2CLQ60I27 953 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 FEZF2Q8TBJ5 459 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 HVCN1Q96D96 273 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 C9orf72Q96LT7 481 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 CGRRF1Q99675 332 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 HERC2P3Q9BVR0 1158 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 DZANK1Q9NVP4 752 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 R3HDM2Q9Y2K5 976 aaKnown RBP9.07□□□□□ -0.96
VPS4B-201ENST00000238497 TIMM13Q9Y5L4 95 aaPredicted RBP9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms