RNA–Protein interactions for RNA: ENST00000640957.1

SCARB2-227, Transcript of scavenger receptor class B member 2, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCARB2, Length 3,255 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB2-227ENST00000640957 TSC1Q92574 1164 aa17.25■□□□□ 0.35
SCARB2-227ENST00000640957 RIPK4P57078 832 aa17.25■□□□□ 0.35
SCARB2-227ENST00000640957 COL17A1Q9UMD9 1497 aaPredicted RBP17.24■□□□□ 0.35
SCARB2-227ENST00000640957 C1orf115Q9H7X2 142 aa17.24■□□□□ 0.35
SCARB2-227ENST00000640957 CARD14Q9BXL6 1004 aa17.23■□□□□ 0.35
SCARB2-227ENST00000640957 PDCL3Q9H2J4 239 aa17.23■□□□□ 0.35
SCARB2-227ENST00000640957 FAM177BA6PVY3 158 aa17.23■□□□□ 0.35
SCARB2-227ENST00000640957 FOXD4L6Q3SYB3 417 aaPredicted RBP17.23■□□□□ 0.35
SCARB2-227ENST00000640957 FOXD4L3Q6VB84 417 aaPredicted RBP17.23■□□□□ 0.35
SCARB2-227ENST00000640957 ZNF692Q9BU19 519 aaPredicted RBP17.23■□□□□ 0.35
SCARB2-227ENST00000640957 CAVIN1Q6NZI2 390 aaKnown RBP17.23■□□□□ 0.35
SCARB2-227ENST00000640957 SMC4Q9NTJ3 1288 aa17.23■□□□□ 0.35
SCARB2-227ENST00000640957 ITSN2Q9NZM3 1697 aa17.22■□□□□ 0.35
SCARB2-227ENST00000640957 CDCA8Q53HL2 280 aa17.22■□□□□ 0.35
SCARB2-227ENST00000640957 ANP32BQ92688 251 aaKnown RBP17.22■□□□□ 0.35
SCARB2-227ENST00000640957 FAM135AQ9P2D6 1515 aa17.22■□□□□ 0.35
SCARB2-227ENST00000640957 SCAPERQ9BY12 1400 aa17.21■□□□□ 0.35
SCARB2-227ENST00000640957 MCTP1Q6DN14 999 aa17.21■□□□□ 0.35
SCARB2-227ENST00000640957 RNF214Q8ND24 703 aa17.21■□□□□ 0.35
SCARB2-227ENST00000640957 RBM27Q9P2N5 1060 aaKnown RBP17.21■□□□□ 0.35
SCARB2-227ENST00000640957 ERCC6L2Q5T890 1561 aa17.21■□□□□ 0.35
SCARB2-227ENST00000640957 ADGRL2O95490 1459 aa17.21■□□□□ 0.35
SCARB2-227ENST00000640957 ABCC10Q5T3U5 1492 aa17.2■□□□□ 0.34
SCARB2-227ENST00000640957 GBP4Q96PP9 640 aa17.2■□□□□ 0.34
SCARB2-227ENST00000640957 TRAPPC8Q9Y2L5 1435 aa17.19■□□□□ 0.34
SCARB2-227ENST00000640957 PKP1Q13835 747 aa17.19■□□□□ 0.34
SCARB2-227ENST00000640957 DZIP1LQ8IYY4 767 aaKnown RBP17.19■□□□□ 0.34
SCARB2-227ENST00000640957 A2MP01023 1474 aa17.19■□□□□ 0.34
SCARB2-227ENST00000640957 E9PCH4 1651 aa17.18■□□□□ 0.34
SCARB2-227ENST00000640957 TPM2P07951 284 aa17.18■□□□□ 0.34
SCARB2-227ENST00000640957 U2AF1L5P0DN76 240 aaPredicted RBP17.18■□□□□ 0.34
SCARB2-227ENST00000640957 U2AF1Q01081 240 aaKnown RBP eCLIP17.18■□□□□ 0.34
SCARB2-227ENST00000640957 MORC1Q86VD1 984 aa17.18■□□□□ 0.34
SCARB2-227ENST00000640957 GAS2L2Q8NHY3 880 aa17.18■□□□□ 0.34
SCARB2-227ENST00000640957 UQCRHLA0A096LP55 91 aa17.18■□□□□ 0.34
SCARB2-227ENST00000640957 UQCRHP07919 91 aa17.18■□□□□ 0.34
SCARB2-227ENST00000640957 MVPQ14764 893 aaKnown RBP17.18■□□□□ 0.34
SCARB2-227ENST00000640957 ZSCAN30Q86W11 494 aa17.18■□□□□ 0.34
SCARB2-227ENST00000640957 APBB1O00213 710 aa17.17■□□□□ 0.34
SCARB2-227ENST00000640957 U2SURPO15042 1029 aaKnown RBP17.16■□□□□ 0.34
SCARB2-227ENST00000640957 EXOSC9Q06265 439 aaKnown RBP17.16■□□□□ 0.34
SCARB2-227ENST00000640957 MLECQ14165 292 aa17.16■□□□□ 0.34
SCARB2-227ENST00000640957 ANKRD45Q5TZF3 282 aa17.16■□□□□ 0.34
SCARB2-227ENST00000640957 ELL2O00472 640 aaPredicted RBP17.16■□□□□ 0.34
SCARB2-227ENST00000640957 SLC12A5Q9H2X9 1139 aa17.16■□□□□ 0.34
SCARB2-227ENST00000640957 ZKSCAN2Q63HK3 967 aa17.15■□□□□ 0.34
SCARB2-227ENST00000640957 WDR7Q9Y4E6 1490 aa17.15■□□□□ 0.34
SCARB2-227ENST00000640957 TRIM27P14373 513 aa17.15■□□□□ 0.34
SCARB2-227ENST00000640957 INSRP06213 1382 aa17.15■□□□□ 0.34
SCARB2-227ENST00000640957 RAPGEF3O95398 923 aa17.15■□□□□ 0.34
SCARB2-227ENST00000640957 MTHFSP49914 203 aa17.15■□□□□ 0.34
SCARB2-227ENST00000640957 BCL11BQ9C0K0 894 aaPredicted RBP17.15■□□□□ 0.34
SCARB2-227ENST00000640957 ADGRF5Q8IZF2 1346 aa17.14■□□□□ 0.33
SCARB2-227ENST00000640957 TMEM57Q8N5G2 664 aa17.14■□□□□ 0.33
SCARB2-227ENST00000640957 NOB1Q9ULX3 412 aaKnown RBP17.14■□□□□ 0.33
SCARB2-227ENST00000640957 KANK1Q14678 1352 aa17.14■□□□□ 0.33
SCARB2-227ENST00000640957 PRDM4Q9UKN5 801 aa17.14■□□□□ 0.33
SCARB2-227ENST00000640957 ARHGEF12Q9NZN5 1544 aa17.13■□□□□ 0.33
SCARB2-227ENST00000640957 RBSNQ9H1K0 784 aa17.13■□□□□ 0.33
SCARB2-227ENST00000640957 STAG3Q9UJ98 1225 aa17.13■□□□□ 0.33
SCARB2-227ENST00000640957 IGSF3O75054 1194 aa17.13■□□□□ 0.33
SCARB2-227ENST00000640957 SSH1Q8WYL5 1049 aa17.13■□□□□ 0.33
SCARB2-227ENST00000640957 KDM5DQ9BY66 1539 aa17.12■□□□□ 0.33
SCARB2-227ENST00000640957 PLA2R1Q13018 1463 aa17.12■□□□□ 0.33
SCARB2-227ENST00000640957 DNTTIP2Q5QJE6 756 aaKnown RBP17.12■□□□□ 0.33
SCARB2-227ENST00000640957 CDC42BPAQ5VT25 1732 aa17.12■□□□□ 0.33
SCARB2-227ENST00000640957 OFD1O75665 1012 aa17.12■□□□□ 0.33
SCARB2-227ENST00000640957 PRIM1P49642 420 aaKnown RBP17.12■□□□□ 0.33
SCARB2-227ENST00000640957 RAB3GAP1Q15042 981 aa17.12■□□□□ 0.33
SCARB2-227ENST00000640957 NOL8Q76FK4 1167 aaKnown RBP17.12■□□□□ 0.33
SCARB2-227ENST00000640957 ABCA8O94911 1581 aa17.12■□□□□ 0.33
SCARB2-227ENST00000640957 PRPF40AO75400 957 aaKnown RBP17.11■□□□□ 0.33
SCARB2-227ENST00000640957 CCDC173Q0VFZ6 552 aa17.11■□□□□ 0.33
SCARB2-227ENST00000640957 ADGBQ8N7X0 1667 aa17.11■□□□□ 0.33
SCARB2-227ENST00000640957 ZNF830Q96NB3 372 aaPredicted RBP17.11■□□□□ 0.33
SCARB2-227ENST00000640957 RUNDC1Q96C34 613 aa17.1■□□□□ 0.33
SCARB2-227ENST00000640957 RTEL1-TNFRSF6BF6WH68 1400 aa17.1■□□□□ 0.33
SCARB2-227ENST00000640957 GOLGA6L22H0YM25 854 aa17.09■□□□□ 0.33
SCARB2-227ENST00000640957 BAG4O95429 457 aaKnown RBP17.09■□□□□ 0.33
SCARB2-227ENST00000640957 SAMD9LQ8IVG5 1584 aa17.09■□□□□ 0.33
SCARB2-227ENST00000640957 AK9Q5TCS8 1911 aa17.09■□□□□ 0.33
SCARB2-227ENST00000640957 CALD1Q05682 793 aaKnown RBP17.09■□□□□ 0.33
SCARB2-227ENST00000640957 C17orf53Q8N3J3 647 aaPredicted RBP17.09■□□□□ 0.33
SCARB2-227ENST00000640957 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.08■□□□□ 0.32
SCARB2-227ENST00000640957 PTMAP06454 111 aaKnown RBP17.08■□□□□ 0.32
SCARB2-227ENST00000640957 KIF2CQ99661 725 aa17.08■□□□□ 0.32
SCARB2-227ENST00000640957 TTC37Q6PGP7 1564 aa17.07■□□□□ 0.32
SCARB2-227ENST00000640957 SRPK2P78362 688 aaKnown RBP17.07■□□□□ 0.32
SCARB2-227ENST00000640957 SHANK2Q9UPX8 1470 aa17.07■□□□□ 0.32
SCARB2-227ENST00000640957 SYCE3A1L190 88 aa17.07■□□□□ 0.32
SCARB2-227ENST00000640957 DTNBO60941 627 aa17.07■□□□□ 0.32
SCARB2-227ENST00000640957 NSFL1CQ9UNZ2 370 aaKnown RBP17.07■□□□□ 0.32
SCARB2-227ENST00000640957 K7ELQ4 463 aaPredicted RBP17.06■□□□□ 0.32
SCARB2-227ENST00000640957 ZSCAN23Q3MJ62 389 aa17.06■□□□□ 0.32
SCARB2-227ENST00000640957 GPRASP1Q5JY77 1395 aa17.06■□□□□ 0.32
SCARB2-227ENST00000640957 TRPM1Q7Z4N2 1603 aa17.06■□□□□ 0.32
SCARB2-227ENST00000640957 CBX1P83916 185 aa17.06■□□□□ 0.32
SCARB2-227ENST00000640957 ZGPATQ8N5A5 531 aaKnown RBP17.06■□□□□ 0.32
SCARB2-227ENST00000640957 CYB5RLQ6IPT4 315 aa17.06■□□□□ 0.32
SCARB2-227ENST00000640957 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.05■□□□□ 0.326e-6■■■■■ 38.2
Retrieved 100 of 20,778 RNA–protein pairs in 1785.8 ms