RNA–Protein interactions for RNA: ENST00000640341.1

SCARB2-221, Transcript of scavenger receptor class B member 2, humanhuman

TSL 5

Gene SCARB2, Length 3,403 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB2-221ENST00000640341 NPC1L1Q9UHC9 1359 aa18.72■□□□□ 0.59
SCARB2-221ENST00000640341 SPHKAPQ2M3C7 1700 aa18.71■□□□□ 0.59
SCARB2-221ENST00000640341 SHROOM2Q13796 1616 aa18.71■□□□□ 0.58
SCARB2-221ENST00000640341 RAPGEF3O95398 923 aa18.7■□□□□ 0.58
SCARB2-221ENST00000640341 KDM5AP29375 1690 aaKnown RBP18.69■□□□□ 0.58
SCARB2-221ENST00000640341 PDZRN3Q9UPQ7 1066 aa18.68■□□□□ 0.58
SCARB2-221ENST00000640341 UPF2Q9HAU5 1272 aaKnown RBP18.67■□□□□ 0.58
SCARB2-221ENST00000640341 C14orf93Q9H972 538 aaKnown RBP18.67■□□□□ 0.58
SCARB2-221ENST00000640341 SMC4Q9NTJ3 1288 aa18.67■□□□□ 0.58
SCARB2-221ENST00000640341 POLR3AO14802 1390 aaPredicted RBP18.66■□□□□ 0.58
SCARB2-221ENST00000640341 MINK1Q8N4C8 1332 aaPredicted RBP18.66■□□□□ 0.58
SCARB2-221ENST00000640341 ANO8Q9HCE9 1232 aaPredicted RBP18.66■□□□□ 0.58
SCARB2-221ENST00000640341 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.65■□□□□ 0.58
SCARB2-221ENST00000640341 MYOM1P52179 1685 aa18.65■□□□□ 0.58
SCARB2-221ENST00000640341 MAPK8IP3Q9UPT6 1336 aa18.65■□□□□ 0.58
SCARB2-221ENST00000640341 CEP152O94986 1710 aa18.65■□□□□ 0.58
SCARB2-221ENST00000640341 ITPRIPQ8IWB1 547 aa18.65■□□□□ 0.58
SCARB2-221ENST00000640341 ABCA6Q8N139 1617 aa18.64■□□□□ 0.58
SCARB2-221ENST00000640341 PMFBP1Q8TBY8 1022 aa18.64■□□□□ 0.57
SCARB2-221ENST00000640341 EVC2Q86UK5 1308 aa18.64■□□□□ 0.57
SCARB2-221ENST00000640341 MYH16Q9H6N6 1097 aa18.64■□□□□ 0.57
SCARB2-221ENST00000640341 FBLN1P23142 703 aa18.64■□□□□ 0.57
SCARB2-221ENST00000640341 TET3O43151 1660 aa18.63■□□□□ 0.57
SCARB2-221ENST00000640341 ASXL2Q76L83 1435 aa18.63■□□□□ 0.57
SCARB2-221ENST00000640341 EXOSC9Q06265 439 aaKnown RBP18.63■□□□□ 0.57
SCARB2-221ENST00000640341 BECN1Q14457 450 aa18.63■□□□□ 0.57
SCARB2-221ENST00000640341 NGEFQ8N5V2 710 aa18.62■□□□□ 0.57
SCARB2-221ENST00000640341 POGKQ9P215 609 aa18.62■□□□□ 0.57
SCARB2-221ENST00000640341 USP19O94966 1318 aa18.62■□□□□ 0.57
SCARB2-221ENST00000640341 UHRF1BP1LA0JNW5 1464 aa18.62■□□□□ 0.57
SCARB2-221ENST00000640341 MAP3K4Q9Y6R4 1608 aa18.62■□□□□ 0.57
SCARB2-221ENST00000640341 RWDD1Q9H446 243 aaPredicted RBP18.62■□□□□ 0.57
SCARB2-221ENST00000640341 MFAP1P55081 439 aaKnown RBP18.61■□□□□ 0.57
SCARB2-221ENST00000640341 ZKSCAN2Q63HK3 967 aa18.6■□□□□ 0.57
SCARB2-221ENST00000640341 DZIP1LQ8IYY4 767 aaKnown RBP18.6■□□□□ 0.57
SCARB2-221ENST00000640341 WDR63Q8IWG1 891 aa18.6■□□□□ 0.57
SCARB2-221ENST00000640341 NPATQ14207 1427 aa18.6■□□□□ 0.57
SCARB2-221ENST00000640341 VGFO15240 615 aaPredicted RBP18.59■□□□□ 0.57
SCARB2-221ENST00000640341 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.59■□□□□ 0.57
SCARB2-221ENST00000640341 STAG3Q9UJ98 1225 aa18.58■□□□□ 0.56
SCARB2-221ENST00000640341 CLASP1Q7Z460 1538 aa18.57■□□□□ 0.56
SCARB2-221ENST00000640341 MYOM2P54296 1465 aa18.57■□□□□ 0.56
SCARB2-221ENST00000640341 IDI1Q13907 227 aa18.57■□□□□ 0.56
SCARB2-221ENST00000640341 MVPQ14764 893 aaKnown RBP18.57■□□□□ 0.56
SCARB2-221ENST00000640341 RIPK4P57078 832 aa18.56■□□□□ 0.56
SCARB2-221ENST00000640341 ELL2O00472 640 aaPredicted RBP18.56■□□□□ 0.56
SCARB2-221ENST00000640341 SSH1Q8WYL5 1049 aa18.56■□□□□ 0.56
SCARB2-221ENST00000640341 GZF1Q9H116 711 aaPredicted RBP18.56■□□□□ 0.56
SCARB2-221ENST00000640341 PRAM1Q96QH2 718 aa18.55■□□□□ 0.56
SCARB2-221ENST00000640341 TRIM27P14373 513 aa18.55■□□□□ 0.56
SCARB2-221ENST00000640341 NOB1Q9ULX3 412 aaKnown RBP18.55■□□□□ 0.56
SCARB2-221ENST00000640341 TMPOP42166 694 aaKnown RBP18.54■□□□□ 0.56
SCARB2-221ENST00000640341 EFCAB6Q5THR3 1501 aa18.54■□□□□ 0.56
SCARB2-221ENST00000640341 KIF1BO60333 1816 aa18.54■□□□□ 0.56
SCARB2-221ENST00000640341 MROH2AA6NES4 1674 aa18.53■□□□□ 0.56
SCARB2-221ENST00000640341 CYB5RLQ6IPT4 315 aa18.53■□□□□ 0.56
SCARB2-221ENST00000640341 INO80Q9ULG1 1556 aaPredicted RBP18.53■□□□□ 0.56
SCARB2-221ENST00000640341 DEPDC5O75140 1603 aa18.53■□□□□ 0.56
SCARB2-221ENST00000640341 CD109Q6YHK3 1445 aa18.53■□□□□ 0.56
SCARB2-221ENST00000640341 TBC1D2Q9BYX2 928 aa18.52■□□□□ 0.56
SCARB2-221ENST00000640341 PPRC1Q5VV67 1664 aaKnown RBP18.52■□□□□ 0.56
SCARB2-221ENST00000640341 SBNO2Q9Y2G9 1366 aa18.52■□□□□ 0.56
SCARB2-221ENST00000640341 HMOX1P09601 288 aa18.52■□□□□ 0.55
SCARB2-221ENST00000640341 THUMPD2Q9BTF0 503 aaKnown RBP18.52■□□□□ 0.55
SCARB2-221ENST00000640341 NINLQ9Y2I6 1382 aa18.52■□□□□ 0.55
SCARB2-221ENST00000640341 MROH1Q8NDA8 1641 aa18.51■□□□□ 0.55
SCARB2-221ENST00000640341 ZNF518AQ6AHZ1 1483 aa18.51■□□□□ 0.55
SCARB2-221ENST00000640341 TMEM57Q8N5G2 664 aa18.51■□□□□ 0.55
SCARB2-221ENST00000640341 A0A1W2PP64 1363 aa18.5■□□□□ 0.55
SCARB2-221ENST00000640341 OSCARQ8IYS5 282 aa18.5■□□□□ 0.55
SCARB2-221ENST00000640341 LNPKQ9C0E8 428 aa18.5■□□□□ 0.55
SCARB2-221ENST00000640341 VWDEQ8N2E2 1590 aa18.5■□□□□ 0.55
SCARB2-221ENST00000640341 PHF23Q9BUL5 403 aaPredicted RBP18.5■□□□□ 0.55
SCARB2-221ENST00000640341 CABP1Q9NZU7 370 aa18.5■□□□□ 0.55
SCARB2-221ENST00000640341 ANKRD36BQ8N2N9 1353 aa18.5■□□□□ 0.55
SCARB2-221ENST00000640341 FYB1O15117 783 aa18.49■□□□□ 0.55
SCARB2-221ENST00000640341 EIF5BO60841 1220 aaKnown RBP18.49■□□□□ 0.55
SCARB2-221ENST00000640341 FBXO31Q5XUX0 539 aaPredicted RBP18.49■□□□□ 0.55
SCARB2-221ENST00000640341 TBC1D32Q96NH3 1257 aa18.49■□□□□ 0.55
SCARB2-221ENST00000640341 C1orf115Q9H7X2 142 aa18.49■□□□□ 0.55
SCARB2-221ENST00000640341 TERF2IPQ9NYB0 399 aa18.49■□□□□ 0.55
SCARB2-221ENST00000640341 TRIM35Q9UPQ4 493 aa18.49■□□□□ 0.55
SCARB2-221ENST00000640341 DIAPH1O60610 1272 aaKnown RBP18.48■□□□□ 0.55
SCARB2-221ENST00000640341 ATF7IPQ6VMQ6 1270 aa18.48■□□□□ 0.55
SCARB2-221ENST00000640341 CCDC27Q2M243 656 aa18.47■□□□□ 0.55
SCARB2-221ENST00000640341 C22orf23Q9BZE7 217 aa18.47■□□□□ 0.55
SCARB2-221ENST00000640341 ARAP3Q8WWN8 1544 aa18.47■□□□□ 0.55
SCARB2-221ENST00000640341 RPGRIP1LQ68CZ1 1315 aa18.47■□□□□ 0.55
SCARB2-221ENST00000640341 ABCA9Q8IUA7 1624 aa18.46■□□□□ 0.55
SCARB2-221ENST00000640341 MLECQ14165 292 aa18.46■□□□□ 0.55
SCARB2-221ENST00000640341 DDX19BQ9UMR2 479 aa18.46■□□□□ 0.55
SCARB2-221ENST00000640341 PRKCSHP14314 528 aaPredicted RBP18.45■□□□□ 0.54
SCARB2-221ENST00000640341 PRKAR2BP31323 418 aa18.45■□□□□ 0.54
SCARB2-221ENST00000640341 HDGFL2Q7Z4V5 671 aaPredicted RBP18.45■□□□□ 0.54
SCARB2-221ENST00000640341 KIDINS220Q9ULH0 1771 aa18.45■□□□□ 0.54
SCARB2-221ENST00000640341 KIAA1210Q9ULL0 1709 aa18.45■□□□□ 0.54
SCARB2-221ENST00000640341 WAPLQ7Z5K2 1190 aa18.45■□□□□ 0.54
SCARB2-221ENST00000640341 CDK19Q9BWU1 502 aa18.45■□□□□ 0.54
SCARB2-221ENST00000640341 FOXD4L1Q9NU39 408 aa18.44■□□□□ 0.54
SCARB2-221ENST00000640341 ADGRB3O60242 1522 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms