RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 ROBO2Q9HCK4 1378 aa25.19■■□□□ 1.62
CLN3-264ENST00000637985 NEXMIFQ5QGS0 1516 aa25.19■■□□□ 1.62
CLN3-264ENST00000637985 SPHKAPQ2M3C7 1700 aa25.18■■□□□ 1.62
CLN3-264ENST00000637985 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.17■■□□□ 1.62
CLN3-264ENST00000637985 NPHP3Q7Z494 1330 aa25.16■■□□□ 1.62
CLN3-264ENST00000637985 GLI3P10071 1580 aa25.16■■□□□ 1.62
CLN3-264ENST00000637985 RALGAPBQ86X10 1494 aa25.15■■□□□ 1.62
CLN3-264ENST00000637985 PXDNQ92626 1479 aa25.15■■□□□ 1.62
CLN3-264ENST00000637985 PRAG1Q86YV5 1406 aa25.15■■□□□ 1.62
CLN3-264ENST00000637985 UNC5CLQ8IV45 518 aa25.14■■□□□ 1.62
CLN3-264ENST00000637985 BRWD3Q6RI45 1802 aa25.12■■□□□ 1.61
CLN3-264ENST00000637985 SLIT2O94813 1529 aa25.12■■□□□ 1.61
CLN3-264ENST00000637985 SF3B2Q13435 895 aaKnown RBP25.11■■□□□ 1.61
CLN3-264ENST00000637985 ESCO1Q5FWF5 840 aa25.11■■□□□ 1.61
CLN3-264ENST00000637985 HFM1A2PYH4 1435 aa25.1■■□□□ 1.61
CLN3-264ENST00000637985 FOXO3O43524 673 aa25.09■■□□□ 1.61
CLN3-264ENST00000637985 CLTCL1P53675 1640 aa25.08■■□□□ 1.61
CLN3-264ENST00000637985 XPCQ01831 940 aaPredicted RBP25.08■■□□□ 1.61
CLN3-264ENST00000637985 SEPT12Q8IYM1 358 aa25.06■■□□□ 1.6
CLN3-264ENST00000637985 HRCP23327 699 aa25.05■■□□□ 1.6
CLN3-264ENST00000637985 CDC42BPGQ6DT37 1551 aa25.05■■□□□ 1.6
CLN3-264ENST00000637985 VGFO15240 615 aaPredicted RBP25.04■■□□□ 1.6
CLN3-264ENST00000637985 LRPPRCP42704 1394 aaKnown RBP25.04■■□□□ 1.6
CLN3-264ENST00000637985 PSDA5PKW4 1024 aaPredicted RBP25.03■■□□□ 1.6
CLN3-264ENST00000637985 ONECUT3O60422 494 aaPredicted RBP25.03■■□□□ 1.6
CLN3-264ENST00000637985 KIF1BO60333 1816 aa25.02■■□□□ 1.6
CLN3-264ENST00000637985 VPS72Q15906 364 aa25■■□□□ 1.59
CLN3-264ENST00000637985 SPATA31A3Q5VYP0 1347 aa24.99■■□□□ 1.59
CLN3-264ENST00000637985 KRT27Q7Z3Y8 459 aa24.99■■□□□ 1.59
CLN3-264ENST00000637985 USP32Q8NFA0 1604 aa24.97■■□□□ 1.59
CLN3-264ENST00000637985 BAG6P46379 1132 aa24.96■■□□□ 1.59
CLN3-264ENST00000637985 NAIPQ13075 1403 aa24.95■■□□□ 1.58
CLN3-264ENST00000637985 RPGRIP1LQ68CZ1 1315 aa24.94■■□□□ 1.58
CLN3-264ENST00000637985 NUTM2FA1L443 756 aa24.92■■□□□ 1.58
CLN3-264ENST00000637985 ITGAEP38570 1179 aa24.91■■□□□ 1.58
CLN3-264ENST00000637985 NWD2Q9ULI1 1742 aa24.91■■□□□ 1.58
CLN3-264ENST00000637985 CCDC144AA2RUR9 1427 aa24.9■■□□□ 1.58
CLN3-264ENST00000637985 KRT28Q7Z3Y7 464 aa24.89■■□□□ 1.58
CLN3-264ENST00000637985 CCDC9Q9Y3X0 531 aaKnown RBP24.89■■□□□ 1.58
CLN3-264ENST00000637985 PLCH1Q4KWH8 1693 aa24.88■■□□□ 1.57
CLN3-264ENST00000637985 WAPLQ7Z5K2 1190 aa24.87■■□□□ 1.57
CLN3-264ENST00000637985 KIF1AQ12756 1690 aa24.87■■□□□ 1.57
CLN3-264ENST00000637985 PPLO60437 1756 aa24.87■■□□□ 1.57
CLN3-264ENST00000637985 TECPR2O15040 1411 aa24.86■■□□□ 1.57
CLN3-264ENST00000637985 HAP1P54257 671 aaPredicted RBP24.86■■□□□ 1.57
CLN3-264ENST00000637985 EN1Q05925 392 aaPredicted RBP24.86■■□□□ 1.57
CLN3-264ENST00000637985 CABLES1Q8TDN4 633 aa24.86■■□□□ 1.57
CLN3-264ENST00000637985 R3HDM1Q15032 1099 aaKnown RBP24.85■■□□□ 1.57
CLN3-264ENST00000637985 TNS3Q68CZ2 1445 aa24.84■■□□□ 1.57
CLN3-264ENST00000637985 FMN2Q9NZ56 1722 aa24.83■■□□□ 1.57
CLN3-264ENST00000637985 FAM83GA6ND36 823 aa24.82■■□□□ 1.56
CLN3-264ENST00000637985 RGPD1P0DJD0 1748 aa24.81■■□□□ 1.56
CLN3-264ENST00000637985 A0A0G2JS52 829 aa24.81■■□□□ 1.56
CLN3-264ENST00000637985 MYT1Q01538 1121 aa24.81■■□□□ 1.56
CLN3-264ENST00000637985 STK26Q9P289 416 aa24.81■■□□□ 1.56
CLN3-264ENST00000637985 PLEKHH1Q9ULM0 1364 aa24.8■■□□□ 1.56
CLN3-264ENST00000637985 DISP2A7MBM2 1401 aa24.8■■□□□ 1.56
CLN3-264ENST00000637985 PSME1Q06323 249 aa24.8■■□□□ 1.56
CLN3-264ENST00000637985 FAM98CQ17RN3 349 aaKnown RBP24.8■■□□□ 1.56
CLN3-264ENST00000637985 ABCC11Q96J66 1382 aa24.8■■□□□ 1.56
CLN3-264ENST00000637985 ABCA3Q99758 1704 aa24.79■■□□□ 1.56
CLN3-264ENST00000637985 YY1P25490 414 aa24.78■■□□□ 1.56
CLN3-264ENST00000637985 SBNO1A3KN83 1393 aa24.78■■□□□ 1.56
CLN3-264ENST00000637985 PLEKHG5O94827 1062 aa24.77■■□□□ 1.56
CLN3-264ENST00000637985 PHF8Q9UPP1 1060 aa24.77■■□□□ 1.56
CLN3-264ENST00000637985 ADGRF5Q8IZF2 1346 aa24.76■■□□□ 1.55
CLN3-264ENST00000637985 NRAPQ86VF7 1730 aa24.75■■□□□ 1.55
CLN3-264ENST00000637985 FAM182BQ5T319 152 aa24.75■■□□□ 1.55
CLN3-264ENST00000637985 ARHGEF10O15013 1369 aa24.75■■□□□ 1.55
CLN3-264ENST00000637985 KNDC1Q76NI1 1749 aa24.75■■□□□ 1.55
CLN3-264ENST00000637985 RGPD8O14715 1765 aaPredicted RBP24.74■■□□□ 1.55
CLN3-264ENST00000637985 TNS1Q9HBL0 1735 aaKnown RBP24.73■■□□□ 1.55
CLN3-264ENST00000637985 EZH2Q15910 746 aaKnown RBP24.73■■□□□ 1.55
CLN3-264ENST00000637985 LMOD2Q6P5Q4 547 aa24.72■■□□□ 1.55
CLN3-264ENST00000637985 BTG4Q9NY30 223 aa24.72■■□□□ 1.55
CLN3-264ENST00000637985 NRXN1Q9ULB1 1477 aa24.71■■□□□ 1.55
CLN3-264ENST00000637985 RRBP1Q9P2E9 1410 aaKnown RBP24.71■■□□□ 1.55
CLN3-264ENST00000637985 TMEM132EQ6IEE7 984 aa24.71■■□□□ 1.55
CLN3-264ENST00000637985 CAMKK2Q96RR4 588 aa24.7■■□□□ 1.54
CLN3-264ENST00000637985 SIRT1Q96EB6 747 aa24.69■■□□□ 1.54
CLN3-264ENST00000637985 SPATA31A5Q5VU36 1347 aa24.68■■□□□ 1.54
CLN3-264ENST00000637985 SPATA31A7Q8IWB4 1347 aa24.68■■□□□ 1.54
CLN3-264ENST00000637985 IFT172Q9UG01 1749 aa24.68■■□□□ 1.54
CLN3-264ENST00000637985 THSD7AQ9UPZ6 1657 aa24.66■■□□□ 1.54
CLN3-264ENST00000637985 YTHDC2Q9H6S0 1430 aaKnown RBP24.66■■□□□ 1.54
CLN3-264ENST00000637985 COL14A1Q05707 1796 aaKnown RBP24.65■■□□□ 1.54
CLN3-264ENST00000637985 PARD3Q8TEW0 1356 aa24.64■■□□□ 1.53
CLN3-264ENST00000637985 ANKRD30BQ9BXX2 1392 aa24.64■■□□□ 1.53
CLN3-264ENST00000637985 ADGRB2O60241 1585 aa24.63■■□□□ 1.53
CLN3-264ENST00000637985 SLC4A1APQ9BWU0 796 aaKnown RBP24.63■■□□□ 1.53
CLN3-264ENST00000637985 TRIM37O94972 964 aa24.62■■□□□ 1.53
CLN3-264ENST00000637985 PIK3C2GO75747 1445 aa24.61■■□□□ 1.53
CLN3-264ENST00000637985 FAM196AQ6ZSG2 479 aa24.61■■□□□ 1.53
CLN3-264ENST00000637985 SPATA31E1Q6ZUB1 1445 aa24.61■■□□□ 1.53
CLN3-264ENST00000637985 RGL3Q3MIN7 710 aa24.6■■□□□ 1.53
CLN3-264ENST00000637985 TRPM3Q9HCF6 1732 aaPredicted RBP24.59■■□□□ 1.53
CLN3-264ENST00000637985 PMFBP1Q8TBY8 1022 aa24.59■■□□□ 1.53
CLN3-264ENST00000637985 APBA3O96018 575 aa24.58■■□□□ 1.53
CLN3-264ENST00000637985 ALS2Q96Q42 1657 aa24.56■■□□□ 1.52
CLN3-264ENST00000637985 RREB1Q92766 1687 aa24.56■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms