RNA–Protein interactions for RNA: ENST00000637494.1

CLN6-221, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5 BASIC

Gene CLN6, Length 765 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-221ENST00000637494 CDC42BPGQ6DT37 1551 aa27.73■■■□□ 2.03
CLN6-221ENST00000637494 WAPLQ7Z5K2 1190 aa27.73■■■□□ 2.03
CLN6-221ENST00000637494 NUTM2BA6NNL0 878 aaPredicted RBP27.71■■■□□ 2.03
CLN6-221ENST00000637494 NUTM2EB1AL46 878 aaPredicted RBP27.71■■■□□ 2.03
CLN6-221ENST00000637494 CFAP70Q5T0N1 1121 aa27.71■■■□□ 2.03
CLN6-221ENST00000637494 NUTM2AQ8IVF1 878 aaPredicted RBP27.71■■■□□ 2.03
CLN6-221ENST00000637494 DDX17Q92841 729 aaKnown RBP27.71■■■□□ 2.03
CLN6-221ENST00000637494 ORAI2Q96SN7 254 aa27.71■■■□□ 2.03
CLN6-221ENST00000637494 SIRT1Q96EB6 747 aa27.7■■■□□ 2.02
CLN6-221ENST00000637494 LRP6O75581 1613 aa27.7■■■□□ 2.02
CLN6-221ENST00000637494 POTEAQ6S8J7 498 aa27.69■■■□□ 2.02
CLN6-221ENST00000637494 STAC3Q96MF2 364 aa27.69■■■□□ 2.02
CLN6-221ENST00000637494 ESCO1Q5FWF5 840 aa27.68■■■□□ 2.02
CLN6-221ENST00000637494 DCAF11Q8TEB1 546 aa27.68■■■□□ 2.02
CLN6-221ENST00000637494 KDM2AQ9Y2K7 1162 aa27.68■■■□□ 2.02
CLN6-221ENST00000637494 ZNF772Q68DY9 489 aaPredicted RBP27.67■■■□□ 2.02
CLN6-221ENST00000637494 PLEKHH1Q9ULM0 1364 aa27.64■■■□□ 2.02
CLN6-221ENST00000637494 NPHP3Q7Z494 1330 aa27.64■■■□□ 2.01
CLN6-221ENST00000637494 PNPLA6Q8IY17 1366 aa27.63■■■□□ 2.01
CLN6-221ENST00000637494 SOS2Q07890 1332 aaPredicted RBP27.63■■■□□ 2.01
CLN6-221ENST00000637494 NUTM2FA1L443 756 aa27.61■■■□□ 2.01
CLN6-221ENST00000637494 POGKQ9P215 609 aa27.61■■■□□ 2.01
CLN6-221ENST00000637494 PRAM1Q96QH2 718 aa27.59■■■□□ 2.01
CLN6-221ENST00000637494 DLC1Q96QB1 1528 aa27.57■■■□□ 2
CLN6-221ENST00000637494 FMN2Q9NZ56 1722 aa27.56■■■□□ 2
CLN6-221ENST00000637494 FOXO3O43524 673 aa27.56■■■□□ 2
CLN6-221ENST00000637494 SAFB2Q14151 953 aaKnown RBP eCLIP27.56■■■□□ 2
CLN6-221ENST00000637494 C8orf37Q96NL8 207 aa27.54■■■□□ 2
CLN6-221ENST00000637494 TRAK1Q9UPV9 953 aa27.54■■■□□ 2
CLN6-221ENST00000637494 AFF2P51816 1311 aa27.53■■■□□ 2
CLN6-221ENST00000637494 ADGRB1O14514 1584 aa27.52■■■□□ 2
CLN6-221ENST00000637494 KIF1AQ12756 1690 aa27.52■■■□□ 2
CLN6-221ENST00000637494 ADAMTS2O95450 1211 aa27.5■■□□□ 1.99
CLN6-221ENST00000637494 PXDNQ92626 1479 aa27.5■■□□□ 1.99
CLN6-221ENST00000637494 RXRBP28702 533 aa27.49■■□□□ 1.99
CLN6-221ENST00000637494 XPCQ01831 940 aaPredicted RBP27.49■■□□□ 1.99
CLN6-221ENST00000637494 NGLY1Q96IV0 654 aa27.49■■□□□ 1.99
CLN6-221ENST00000637494 PHF8Q9UPP1 1060 aa27.47■■□□□ 1.99
CLN6-221ENST00000637494 EIF3AQ14152 1382 aaKnown RBP27.46■■□□□ 1.99
CLN6-221ENST00000637494 COL22A1Q8NFW1 1626 aaPredicted RBP27.45■■□□□ 1.99
CLN6-221ENST00000637494 PSME1Q06323 249 aa27.45■■□□□ 1.98
CLN6-221ENST00000637494 KRT28Q7Z3Y7 464 aa27.44■■□□□ 1.98
CLN6-221ENST00000637494 ADGRB2O60241 1585 aa27.43■■□□□ 1.98
CLN6-221ENST00000637494 ANKARQ7Z5J8 1434 aa27.43■■□□□ 1.98
CLN6-221ENST00000637494 MINK1Q8N4C8 1332 aaPredicted RBP27.42■■□□□ 1.98
CLN6-221ENST00000637494 HIRIP3Q9BW71 556 aaPredicted RBP27.42■■□□□ 1.98
CLN6-221ENST00000637494 QTRT2Q9H974 415 aaKnown RBP27.42■■□□□ 1.98
CLN6-221ENST00000637494 RGPD8O14715 1765 aaPredicted RBP27.4■■□□□ 1.98
CLN6-221ENST00000637494 SPATA31A3Q5VYP0 1347 aa27.4■■□□□ 1.98
CLN6-221ENST00000637494 USP21Q9UK80 565 aa27.38■■□□□ 1.97
CLN6-221ENST00000637494 WASLO00401 505 aaPredicted RBP27.37■■□□□ 1.97
CLN6-221ENST00000637494 RBM6P78332 1123 aaKnown RBP27.37■■□□□ 1.97
CLN6-221ENST00000637494 KIAA1210Q9ULL0 1709 aa27.37■■□□□ 1.97
CLN6-221ENST00000637494 CDK12Q9NYV4 1490 aaPredicted RBP27.37■■□□□ 1.97
CLN6-221ENST00000637494 HAP1P54257 671 aaPredicted RBP27.35■■□□□ 1.97
CLN6-221ENST00000637494 PMFBP1Q8TBY8 1022 aa27.35■■□□□ 1.97
CLN6-221ENST00000637494 TNS3Q68CZ2 1445 aa27.34■■□□□ 1.97
CLN6-221ENST00000637494 ARHGEF28Q8N1W1 1705 aaKnown RBP27.34■■□□□ 1.97
CLN6-221ENST00000637494 TULP4Q9NRJ4 1543 aa27.34■■□□□ 1.97
CLN6-221ENST00000637494 LMOD2Q6P5Q4 547 aa27.33■■□□□ 1.97
CLN6-221ENST00000637494 FNBP4Q8N3X1 1017 aaPredicted RBP27.33■■□□□ 1.97
CLN6-221ENST00000637494 TRPC5Q9UL62 973 aaPredicted RBP27.33■■□□□ 1.97
CLN6-221ENST00000637494 SBNO1A3KN83 1393 aa27.33■■□□□ 1.97
CLN6-221ENST00000637494 USP32Q8NFA0 1604 aa27.32■■□□□ 1.96
CLN6-221ENST00000637494 GPRASP1Q5JY77 1395 aa27.32■■□□□ 1.96
CLN6-221ENST00000637494 ARHGEF10O15013 1369 aa27.31■■□□□ 1.96
CLN6-221ENST00000637494 MARF1Q9Y4F3 1742 aaKnown RBP27.3■■□□□ 1.96
CLN6-221ENST00000637494 NEUROD1Q13562 356 aa27.28■■□□□ 1.96
CLN6-221ENST00000637494 NGDNQ8NEJ9 315 aaKnown RBP27.28■■□□□ 1.96
CLN6-221ENST00000637494 L3MBTL2Q969R5 705 aa27.27■■□□□ 1.96
CLN6-221ENST00000637494 PRR36Q9H6K5 1346 aa27.26■■□□□ 1.95
CLN6-221ENST00000637494 NBPF1Q3BBV0 1214 aa27.26■■□□□ 1.95
CLN6-221ENST00000637494 SIN3AQ96ST3 1273 aa27.26■■□□□ 1.95
CLN6-221ENST00000637494 PLEKHG5O94827 1062 aa27.25■■□□□ 1.95
CLN6-221ENST00000637494 NUDT16Q96DE0 195 aaKnown RBP27.24■■□□□ 1.95
CLN6-221ENST00000637494 ITSN1Q15811 1721 aa27.24■■□□□ 1.95
CLN6-221ENST00000637494 CDK19Q9BWU1 502 aa27.23■■□□□ 1.95
CLN6-221ENST00000637494 RGS12O14924 1447 aa27.23■■□□□ 1.95
CLN6-221ENST00000637494 ATRNO75882 1429 aa27.22■■□□□ 1.95
CLN6-221ENST00000637494 CENPJQ9HC77 1338 aaPredicted RBP27.2■■□□□ 1.95
CLN6-221ENST00000637494 PAK3O75914 559 aaPredicted RBP27.2■■□□□ 1.94
CLN6-221ENST00000637494 CABLES1Q8TDN4 633 aa27.2■■□□□ 1.94
CLN6-221ENST00000637494 ATP7BP35670 1465 aa27.19■■□□□ 1.94
CLN6-221ENST00000637494 BCL9LQ86UU0 1499 aa27.19■■□□□ 1.94
CLN6-221ENST00000637494 UPF1Q92900 1129 aaKnown RBP eCLIP27.19■■□□□ 1.94
CLN6-221ENST00000637494 UNC5CLQ8IV45 518 aa27.18■■□□□ 1.94
CLN6-221ENST00000637494 TRIM26Q12899 539 aaPredicted RBP27.17■■□□□ 1.94
CLN6-221ENST00000637494 TRPM3Q9HCF6 1732 aaPredicted RBP27.16■■□□□ 1.94
CLN6-221ENST00000637494 CCDC61Q9Y6R9 512 aa27.16■■□□□ 1.94
CLN6-221ENST00000637494 SRPK2P78362 688 aaKnown RBP27.15■■□□□ 1.94
CLN6-221ENST00000637494 GJD4Q96KN9 370 aaPredicted RBP27.15■■□□□ 1.94
CLN6-221ENST00000637494 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.15■■□□□ 1.94
CLN6-221ENST00000637494 SLIT2O94813 1529 aa27.15■■□□□ 1.94
CLN6-221ENST00000637494 ABCA3Q99758 1704 aa27.13■■□□□ 1.93
CLN6-221ENST00000637494 ROCK2O75116 1388 aaKnown RBP27.12■■□□□ 1.93
CLN6-221ENST00000637494 ALS2Q96Q42 1657 aa27.12■■□□□ 1.93
CLN6-221ENST00000637494 ATAD2Q6PL18 1390 aa27.11■■□□□ 1.93
CLN6-221ENST00000637494 TRPM1Q7Z4N2 1603 aa27.11■■□□□ 1.93
CLN6-221ENST00000637494 ACEP12821 1306 aa27.1■■□□□ 1.93
CLN6-221ENST00000637494 QRICH2Q9H0J4 1663 aa27.09■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms