RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 ADAMTS2O95450 1211 aa26.02■■□□□ 1.76
CLN3-247ENST00000636351 ANKRD30BQ9BXX2 1392 aa26.02■■□□□ 1.76
CLN3-247ENST00000636351 QTRT2Q9H974 415 aaKnown RBP26■■□□□ 1.75
CLN3-247ENST00000636351 RGS12O14924 1447 aa25.99■■□□□ 1.75
CLN3-247ENST00000636351 ADGRF5Q8IZF2 1346 aa25.99■■□□□ 1.75
CLN3-247ENST00000636351 NGLY1Q96IV0 654 aa25.99■■□□□ 1.75
CLN3-247ENST00000636351 RBM6P78332 1123 aaKnown RBP25.98■■□□□ 1.75
CLN3-247ENST00000636351 RGL3Q3MIN7 710 aa25.97■■□□□ 1.75
CLN3-247ENST00000636351 CDC42BPGQ6DT37 1551 aa25.97■■□□□ 1.75
CLN3-247ENST00000636351 SPATA31E1Q6ZUB1 1445 aa25.96■■□□□ 1.75
CLN3-247ENST00000636351 ESCO1Q5FWF5 840 aa25.94■■□□□ 1.74
CLN3-247ENST00000636351 STK26Q9P289 416 aa25.93■■□□□ 1.74
CLN3-247ENST00000636351 DHX57Q6P158 1386 aaKnown RBP25.93■■□□□ 1.74
CLN3-247ENST00000636351 TECPR2O15040 1411 aa25.91■■□□□ 1.74
CLN3-247ENST00000636351 COL22A1Q8NFW1 1626 aaPredicted RBP25.91■■□□□ 1.74
CLN3-247ENST00000636351 NPHP3Q7Z494 1330 aa25.9■■□□□ 1.74
CLN3-247ENST00000636351 WAPLQ7Z5K2 1190 aa25.9■■□□□ 1.74
CLN3-247ENST00000636351 USP21Q9UK80 565 aa25.9■■□□□ 1.74
CLN3-247ENST00000636351 IFT172Q9UG01 1749 aa25.9■■□□□ 1.74
CLN3-247ENST00000636351 LRPPRCP42704 1394 aaKnown RBP25.9■■□□□ 1.74
CLN3-247ENST00000636351 PXDNQ92626 1479 aa25.89■■□□□ 1.73
CLN3-247ENST00000636351 TMEM132EQ6IEE7 984 aa25.88■■□□□ 1.73
CLN3-247ENST00000636351 PIK3C2GO75747 1445 aa25.88■■□□□ 1.73
CLN3-247ENST00000636351 PLEKHH1Q9ULM0 1364 aa25.87■■□□□ 1.73
CLN3-247ENST00000636351 NUTM2FA1L443 756 aa25.87■■□□□ 1.73
CLN3-247ENST00000636351 XPCQ01831 940 aaPredicted RBP25.87■■□□□ 1.73
CLN3-247ENST00000636351 MYOM2P54296 1465 aa25.86■■□□□ 1.73
CLN3-247ENST00000636351 ABCC11Q96J66 1382 aa25.86■■□□□ 1.73
CLN3-247ENST00000636351 FOXO3O43524 673 aa25.86■■□□□ 1.73
CLN3-247ENST00000636351 FNBP4Q8N3X1 1017 aaPredicted RBP25.86■■□□□ 1.73
CLN3-247ENST00000636351 TRPC5Q9UL62 973 aaPredicted RBP25.85■■□□□ 1.73
CLN3-247ENST00000636351 KNDC1Q76NI1 1749 aa25.84■■□□□ 1.73
CLN3-247ENST00000636351 YTHDC2Q9H6S0 1430 aaKnown RBP25.82■■□□□ 1.72
CLN3-247ENST00000636351 ATRNO75882 1429 aa25.81■■□□□ 1.72
CLN3-247ENST00000636351 FMN2Q9NZ56 1722 aa25.79■■□□□ 1.72
CLN3-247ENST00000636351 ATAD2Q6PL18 1390 aa25.79■■□□□ 1.72
CLN3-247ENST00000636351 BCL9LQ86UU0 1499 aa25.77■■□□□ 1.72
CLN3-247ENST00000636351 NEUROD1Q13562 356 aa25.76■■□□□ 1.71
CLN3-247ENST00000636351 SIN3AQ96ST3 1273 aa25.75■■□□□ 1.71
CLN3-247ENST00000636351 C14orf93Q9H972 538 aaKnown RBP25.75■■□□□ 1.71
CLN3-247ENST00000636351 MARF1Q9Y4F3 1742 aaKnown RBP25.74■■□□□ 1.71
CLN3-247ENST00000636351 KIF1AQ12756 1690 aa25.74■■□□□ 1.71
CLN3-247ENST00000636351 NRXN1Q9ULB1 1477 aa25.73■■□□□ 1.71
CLN3-247ENST00000636351 CFAP70Q5T0N1 1121 aa25.73■■□□□ 1.71
CLN3-247ENST00000636351 DCAF11Q8TEB1 546 aa25.73■■□□□ 1.71
CLN3-247ENST00000636351 KDM2AQ9Y2K7 1162 aa25.73■■□□□ 1.71
CLN3-247ENST00000636351 SPATA31A3Q5VYP0 1347 aa25.72■■□□□ 1.71
CLN3-247ENST00000636351 SIRT1Q96EB6 747 aa25.72■■□□□ 1.71
CLN3-247ENST00000636351 KRT28Q7Z3Y7 464 aa25.7■■□□□ 1.7
CLN3-247ENST00000636351 GJD4Q96KN9 370 aaPredicted RBP25.68■■□□□ 1.7
CLN3-247ENST00000636351 SAFB2Q14151 953 aaKnown RBP eCLIP25.67■■□□□ 1.7
CLN3-247ENST00000636351 PHF8Q9UPP1 1060 aa25.67■■□□□ 1.7
CLN3-247ENST00000636351 PRAM1Q96QH2 718 aa25.66■■□□□ 1.7
CLN3-247ENST00000636351 SLIT2O94813 1529 aa25.66■■□□□ 1.7
CLN3-247ENST00000636351 TNS3Q68CZ2 1445 aa25.65■■□□□ 1.7
CLN3-247ENST00000636351 USP32Q8NFA0 1604 aa25.65■■□□□ 1.7
CLN3-247ENST00000636351 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.65■■□□□ 1.7
CLN3-247ENST00000636351 UNC5CLQ8IV45 518 aa25.64■■□□□ 1.7
CLN3-247ENST00000636351 STAC3Q96MF2 364 aa25.63■■□□□ 1.69
CLN3-247ENST00000636351 RGPD8O14715 1765 aaPredicted RBP25.63■■□□□ 1.69
CLN3-247ENST00000636351 RALGAPBQ86X10 1494 aa25.62■■□□□ 1.69
CLN3-247ENST00000636351 PLEKHG5O94827 1062 aa25.62■■□□□ 1.69
CLN3-247ENST00000636351 HAP1P54257 671 aaPredicted RBP25.62■■□□□ 1.69
CLN3-247ENST00000636351 PSME1Q06323 249 aa25.62■■□□□ 1.69
CLN3-247ENST00000636351 GLI3P10071 1580 aa25.61■■□□□ 1.69
CLN3-247ENST00000636351 CCER1Q8TC90 406 aaPredicted RBP25.61■■□□□ 1.69
CLN3-247ENST00000636351 CABLES1Q8TDN4 633 aa25.61■■□□□ 1.69
CLN3-247ENST00000636351 POGKQ9P215 609 aa25.61■■□□□ 1.69
CLN3-247ENST00000636351 DLC1Q96QB1 1528 aa25.61■■□□□ 1.69
CLN3-247ENST00000636351 TONSLQ96HA7 1378 aa25.6■■□□□ 1.69
CLN3-247ENST00000636351 L3MBTL2Q969R5 705 aa25.6■■□□□ 1.69
CLN3-247ENST00000636351 LMOD2Q6P5Q4 547 aa25.59■■□□□ 1.69
CLN3-247ENST00000636351 SBNO1A3KN83 1393 aa25.58■■□□□ 1.69
CLN3-247ENST00000636351 ADGRB1O14514 1584 aa25.58■■□□□ 1.69
CLN3-247ENST00000636351 EP400Q96L91 3159 aa25.58■■□□□ 1.69
CLN3-247ENST00000636351 PMFBP1Q8TBY8 1022 aa25.57■■□□□ 1.68
CLN3-247ENST00000636351 ADGRB2O60241 1585 aa25.56■■□□□ 1.68
CLN3-247ENST00000636351 ANKARQ7Z5J8 1434 aa25.56■■□□□ 1.68
CLN3-247ENST00000636351 CCDC125Q86Z20 511 aa25.56■■□□□ 1.68
CLN3-247ENST00000636351 ARHGEF10O15013 1369 aa25.56■■□□□ 1.68
CLN3-247ENST00000636351 CLSPNQ9HAW4 1339 aa25.55■■□□□ 1.68
CLN3-247ENST00000636351 HIRIP3Q9BW71 556 aaPredicted RBP25.54■■□□□ 1.68
CLN3-247ENST00000636351 TRAK1Q9UPV9 953 aa25.54■■□□□ 1.68
CLN3-247ENST00000636351 ABCA3Q99758 1704 aa25.54■■□□□ 1.68
CLN3-247ENST00000636351 ZRANB1Q9UGI0 708 aa25.53■■□□□ 1.68
CLN3-247ENST00000636351 PLCH1Q4KWH8 1693 aa25.52■■□□□ 1.68
CLN3-247ENST00000636351 VPS72Q15906 364 aa25.52■■□□□ 1.68
CLN3-247ENST00000636351 MINK1Q8N4C8 1332 aaPredicted RBP25.51■■□□□ 1.67
CLN3-247ENST00000636351 CCDC9Q9Y3X0 531 aaKnown RBP25.5■■□□□ 1.67
CLN3-247ENST00000636351 SEPT12Q8IYM1 358 aa25.49■■□□□ 1.67
CLN3-247ENST00000636351 SRCAPQ6ZRS2 3230 aa25.49■■□□□ 1.67
CLN3-247ENST00000636351 NWD2Q9ULI1 1742 aa25.49■■□□□ 1.67
CLN3-247ENST00000636351 BLMP54132 1417 aaPredicted RBP25.48■■□□□ 1.67
CLN3-247ENST00000636351 PRR36Q9H6K5 1346 aa25.48■■□□□ 1.67
CLN3-247ENST00000636351 TULP4Q9NRJ4 1543 aa25.47■■□□□ 1.67
CLN3-247ENST00000636351 TRPM3Q9HCF6 1732 aaPredicted RBP25.46■■□□□ 1.67
CLN3-247ENST00000636351 EIF3AQ14152 1382 aaKnown RBP25.46■■□□□ 1.67
CLN3-247ENST00000636351 FAM83GA6ND36 823 aa25.46■■□□□ 1.67
CLN3-247ENST00000636351 BRWD3Q6RI45 1802 aa25.46■■□□□ 1.67
CLN3-247ENST00000636351 GPRASP1Q5JY77 1395 aa25.45■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms