RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 NKTRP30414 1462 aaKnown RBP28.77■■■□□ 2.2
CLN3-245ENST00000636172 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.76■■■□□ 2.19
CLN3-245ENST00000636172 WASHC2AQ641Q2 1341 aa28.75■■■□□ 2.19
CLN3-245ENST00000636172 MINK1Q8N4C8 1332 aaPredicted RBP28.75■■■□□ 2.19
CLN3-245ENST00000636172 TMF1P82094 1093 aa28.74■■■□□ 2.19
CLN3-245ENST00000636172 TULP4Q9NRJ4 1543 aa28.74■■■□□ 2.19
CLN3-245ENST00000636172 KIF7Q2M1P5 1343 aa28.73■■■□□ 2.19
CLN3-245ENST00000636172 SLC24A1O60721 1099 aa28.73■■■□□ 2.19
CLN3-245ENST00000636172 CCDC7Q96M83 1385 aa28.72■■■□□ 2.19
CLN3-245ENST00000636172 ADGRB2O60241 1585 aa28.71■■■□□ 2.19
CLN3-245ENST00000636172 ZNF335Q9H4Z2 1342 aaPredicted RBP28.71■■■□□ 2.19
CLN3-245ENST00000636172 NALCNQ8IZF0 1738 aa28.67■■■□□ 2.18
CLN3-245ENST00000636172 EVC2Q86UK5 1308 aa28.67■■■□□ 2.18
CLN3-245ENST00000636172 PROSER2Q86WR7 435 aaPredicted RBP28.65■■■□□ 2.18
CLN3-245ENST00000636172 CERKQ8TCT0 537 aa28.65■■■□□ 2.18
CLN3-245ENST00000636172 RBM33Q96EV2 1170 aaKnown RBP28.65■■■□□ 2.18
CLN3-245ENST00000636172 CDCA8Q53HL2 280 aa28.64■■■□□ 2.17
CLN3-245ENST00000636172 POLR3GLQ9BT43 218 aa28.63■■■□□ 2.17
CLN3-245ENST00000636172 ADGRL3Q9HAR2 1447 aa28.62■■■□□ 2.17
CLN3-245ENST00000636172 WASLO00401 505 aaPredicted RBP28.61■■■□□ 2.17
CLN3-245ENST00000636172 TMEM94Q12767 1356 aa28.61■■■□□ 2.17
CLN3-245ENST00000636172 CDK19Q9BWU1 502 aa28.6■■■□□ 2.17
CLN3-245ENST00000636172 XIRP1Q702N8 1843 aaKnown RBP28.6■■■□□ 2.17
CLN3-245ENST00000636172 LRRC7Q96NW7 1537 aa28.6■■■□□ 2.17
CLN3-245ENST00000636172 CABP2Q9NPB3 220 aa28.59■■■□□ 2.17
CLN3-245ENST00000636172 CDC42BPGQ6DT37 1551 aa28.59■■■□□ 2.17
CLN3-245ENST00000636172 MYOM1P52179 1685 aa28.58■■■□□ 2.17
CLN3-245ENST00000636172 SRPK2P78362 688 aaKnown RBP28.58■■■□□ 2.17
CLN3-245ENST00000636172 PUS7Q96PZ0 661 aaKnown RBP28.58■■■□□ 2.17
CLN3-245ENST00000636172 NCOA3Q9Y6Q9 1424 aa28.58■■■□□ 2.17
CLN3-245ENST00000636172 LTBP4Q8N2S1 1624 aa28.55■■■□□ 2.16
CLN3-245ENST00000636172 FMN2Q9NZ56 1722 aa28.54■■■□□ 2.16
CLN3-245ENST00000636172 C14orf37Q86TY3 774 aa28.54■■■□□ 2.16
CLN3-245ENST00000636172 DDX10Q13206 875 aaKnown RBP28.53■■■□□ 2.16
CLN3-245ENST00000636172 ATAD2Q6PL18 1390 aa28.52■■■□□ 2.16
CLN3-245ENST00000636172 ATP7BP35670 1465 aa28.51■■■□□ 2.15
CLN3-245ENST00000636172 USP32Q8NFA0 1604 aa28.51■■■□□ 2.15
CLN3-245ENST00000636172 C19orf44Q9H6X5 657 aa28.49■■■□□ 2.15
CLN3-245ENST00000636172 PRR36Q9H6K5 1346 aa28.49■■■□□ 2.15
CLN3-245ENST00000636172 TOPAZ1Q8N9V7 1692 aa28.48■■■□□ 2.15
CLN3-245ENST00000636172 NUDT16Q96DE0 195 aaKnown RBP28.48■■■□□ 2.15
CLN3-245ENST00000636172 DCCP43146 1447 aa28.46■■■□□ 2.15
CLN3-245ENST00000636172 ANKARQ7Z5J8 1434 aa28.46■■■□□ 2.15
CLN3-245ENST00000636172 RGPD8O14715 1765 aaPredicted RBP28.45■■■□□ 2.15
CLN3-245ENST00000636172 MSH6P52701 1360 aa28.44■■■□□ 2.14
CLN3-245ENST00000636172 NINLQ9Y2I6 1382 aa28.44■■■□□ 2.14
CLN3-245ENST00000636172 NUTM2FA1L443 756 aa28.44■■■□□ 2.14
CLN3-245ENST00000636172 TMC1Q8TDI8 760 aa28.43■■■□□ 2.14
CLN3-245ENST00000636172 ITSN1Q15811 1721 aa28.43■■■□□ 2.14
CLN3-245ENST00000636172 SLC12A5Q9H2X9 1139 aa28.43■■■□□ 2.14
CLN3-245ENST00000636172 PPIP5K1Q6PFW1 1433 aa28.42■■■□□ 2.14
CLN3-245ENST00000636172 CCDC61Q9Y6R9 512 aa28.42■■■□□ 2.14
CLN3-245ENST00000636172 PANK3Q9H999 370 aa28.39■■■□□ 2.14
CLN3-245ENST00000636172 CABP1Q9NZU7 370 aa28.39■■■□□ 2.14
CLN3-245ENST00000636172 ATF3P18847 181 aa28.38■■■□□ 2.13
CLN3-245ENST00000636172 CD163L1Q9NR16 1453 aa28.38■■■□□ 2.13
CLN3-245ENST00000636172 CADPS2Q86UW7 1296 aa28.37■■■□□ 2.13
CLN3-245ENST00000636172 MST1RQ04912 1400 aa28.37■■■□□ 2.13
CLN3-245ENST00000636172 DIEXFQ68CQ4 756 aaKnown RBP28.36■■■□□ 2.13
CLN3-245ENST00000636172 ANKRD36BQ8N2N9 1353 aa28.36■■■□□ 2.13
CLN3-245ENST00000636172 IQSEC2Q5JU85 1478 aa28.36■■■□□ 2.13
CLN3-245ENST00000636172 C1orf167Q5SNV9 1468 aa28.34■■■□□ 2.13
CLN3-245ENST00000636172 A0A1W2PP64 1363 aa28.34■■■□□ 2.13
CLN3-245ENST00000636172 PLEKHG3A1L390 1219 aa28.33■■■□□ 2.13
CLN3-245ENST00000636172 AKAP12Q02952 1782 aa28.32■■■□□ 2.12
CLN3-245ENST00000636172 CPSF1Q10570 1443 aaKnown RBP28.31■■■□□ 2.12
CLN3-245ENST00000636172 TERF2IPQ9NYB0 399 aa28.31■■■□□ 2.12
CLN3-245ENST00000636172 PER1O15534 1290 aaPredicted RBP28.3■■■□□ 2.12
CLN3-245ENST00000636172 CARD14Q9BXL6 1004 aa28.3■■■□□ 2.12
CLN3-245ENST00000636172 MON2Q7Z3U7 1717 aa28.28■■■□□ 2.12
CLN3-245ENST00000636172 ESCO1Q5FWF5 840 aa28.28■■■□□ 2.12
CLN3-245ENST00000636172 HDGFL2Q7Z4V5 671 aaPredicted RBP28.28■■■□□ 2.12
CLN3-245ENST00000636172 PMFBP1Q8TBY8 1022 aa28.28■■■□□ 2.12
CLN3-245ENST00000636172 POLR3AO14802 1390 aaPredicted RBP28.27■■■□□ 2.12
CLN3-245ENST00000636172 ACEP12821 1306 aa28.27■■■□□ 2.12
CLN3-245ENST00000636172 ORAI2Q96SN7 254 aa28.27■■■□□ 2.12
CLN3-245ENST00000636172 PHF8Q9UPP1 1060 aa28.27■■■□□ 2.12
CLN3-245ENST00000636172 NSD3Q9BZ95 1437 aa28.26■■■□□ 2.11
CLN3-245ENST00000636172 KIF1AQ12756 1690 aa28.26■■■□□ 2.11
CLN3-245ENST00000636172 KTN1Q86UP2 1357 aaKnown RBP28.24■■■□□ 2.11
CLN3-245ENST00000636172 NGDNQ8NEJ9 315 aaKnown RBP28.23■■■□□ 2.11
CLN3-245ENST00000636172 SLAIN2Q9P270 581 aa28.23■■■□□ 2.11
CLN3-245ENST00000636172 KNSTRNQ9Y448 316 aa28.23■■■□□ 2.11
CLN3-245ENST00000636172 NRKQ7Z2Y5 1582 aa28.22■■■□□ 2.11
CLN3-245ENST00000636172 ZNF692Q9BU19 519 aaPredicted RBP28.21■■■□□ 2.11
CLN3-245ENST00000636172 USP6P35125 1406 aa28.2■■■□□ 2.11
CLN3-245ENST00000636172 EDC4Q6P2E9 1401 aaKnown RBP28.19■■■□□ 2.1
CLN3-245ENST00000636172 AMER1Q5JTC6 1135 aaPredicted RBP28.18■■■□□ 2.1
CLN3-245ENST00000636172 BRINP3Q76B58 766 aa28.17■■■□□ 2.1
CLN3-245ENST00000636172 SSH2Q76I76 1423 aa28.16■■■□□ 2.1
CLN3-245ENST00000636172 FOXO3O43524 673 aa28.14■■■□□ 2.1
CLN3-245ENST00000636172 CGNL1Q0VF96 1302 aa28.14■■■□□ 2.1
CLN3-245ENST00000636172 KIF20BQ96Q89 1820 aa28.14■■■□□ 2.1
CLN3-245ENST00000636172 NPC1L1Q9UHC9 1359 aa28.14■■■□□ 2.1
CLN3-245ENST00000636172 CNGB1Q14028 1251 aaPredicted RBP28.12■■■□□ 2.09
CLN3-245ENST00000636172 CC2D1BQ5T0F9 858 aaKnown RBP28.12■■■□□ 2.09
CLN3-245ENST00000636172 TTC21BQ7Z4L5 1316 aa28.11■■■□□ 2.09
CLN3-245ENST00000636172 ANP32CO43423 234 aa28.11■■■□□ 2.09
CLN3-245ENST00000636172 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.11■■■□□ 2.09
CLN3-245ENST00000636172 PSME1Q06323 249 aa28.1■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms