RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 PRAM1Q96QH2 718 aa29.72■■■□□ 2.35
CLN3-240ENST00000631023 MST1RQ04912 1400 aa29.71■■■□□ 2.35
CLN3-240ENST00000631023 CLSPNQ9HAW4 1339 aa29.7■■■□□ 2.35
CLN3-240ENST00000631023 CDC42BPGQ6DT37 1551 aa29.69■■■□□ 2.34
CLN3-240ENST00000631023 NBPF1Q3BBV0 1214 aa29.68■■■□□ 2.34
CLN3-240ENST00000631023 SAFB2Q14151 953 aaKnown RBP eCLIP29.66■■■□□ 2.34
CLN3-240ENST00000631023 PHLPP1O60346 1717 aa29.65■■■□□ 2.34
CLN3-240ENST00000631023 ARHGEF28Q8N1W1 1705 aaKnown RBP29.65■■■□□ 2.34
CLN3-240ENST00000631023 TRPM1Q7Z4N2 1603 aa29.65■■■□□ 2.34
CLN3-240ENST00000631023 BRINP3Q76B58 766 aa29.64■■■□□ 2.34
CLN3-240ENST00000631023 C1orf167Q5SNV9 1468 aa29.63■■■□□ 2.33
CLN3-240ENST00000631023 CCER1Q8TC90 406 aaPredicted RBP29.61■■■□□ 2.33
CLN3-240ENST00000631023 FMN2Q9NZ56 1722 aa29.6■■■□□ 2.33
CLN3-240ENST00000631023 AHDC1Q5TGY3 1603 aaPredicted RBP29.58■■■□□ 2.33
CLN3-240ENST00000631023 ROCK2O75116 1388 aaKnown RBP29.58■■■□□ 2.33
CLN3-240ENST00000631023 NBPF8Q3BBV2 869 aa29.57■■■□□ 2.32
CLN3-240ENST00000631023 ORAI2Q96SN7 254 aa29.56■■■□□ 2.32
CLN3-240ENST00000631023 ADGRB2O60241 1585 aa29.56■■■□□ 2.32
CLN3-240ENST00000631023 MINK1Q8N4C8 1332 aaPredicted RBP29.55■■■□□ 2.32
CLN3-240ENST00000631023 NHSL1Q5SYE7 1610 aa29.55■■■□□ 2.32
CLN3-240ENST00000631023 NUTM2FA1L443 756 aa29.55■■■□□ 2.32
CLN3-240ENST00000631023 RGPD8O14715 1765 aaPredicted RBP29.55■■■□□ 2.32
CLN3-240ENST00000631023 ESCO1Q5FWF5 840 aa29.54■■■□□ 2.32
CLN3-240ENST00000631023 TIMELESSQ9UNS1 1208 aa29.54■■■□□ 2.32
CLN3-240ENST00000631023 HIRIP3Q9BW71 556 aaPredicted RBP29.52■■■□□ 2.32
CLN3-240ENST00000631023 COL16A1Q07092 1604 aaPredicted RBP29.52■■■□□ 2.32
CLN3-240ENST00000631023 EIF3AQ14152 1382 aaKnown RBP29.49■■■□□ 2.31
CLN3-240ENST00000631023 CENPJQ9HC77 1338 aaPredicted RBP29.48■■■□□ 2.31
CLN3-240ENST00000631023 WASLO00401 505 aaPredicted RBP29.47■■■□□ 2.31
CLN3-240ENST00000631023 GPRASP1Q5JY77 1395 aa29.47■■■□□ 2.31
CLN3-240ENST00000631023 RALGAPBQ86X10 1494 aa29.47■■■□□ 2.31
CLN3-240ENST00000631023 ANKARQ7Z5J8 1434 aa29.46■■■□□ 2.31
CLN3-240ENST00000631023 JCADQ9P266 1359 aa29.46■■■□□ 2.31
CLN3-240ENST00000631023 DDX17Q92841 729 aaKnown RBP29.45■■■□□ 2.31
CLN3-240ENST00000631023 CARD11Q9BXL7 1154 aa29.45■■■□□ 2.31
CLN3-240ENST00000631023 KIF1AQ12756 1690 aa29.45■■■□□ 2.3
CLN3-240ENST00000631023 QRICH2Q9H0J4 1663 aa29.45■■■□□ 2.3
CLN3-240ENST00000631023 LRRC59Q96AG4 307 aaKnown RBP29.44■■■□□ 2.3
CLN3-240ENST00000631023 NPHP3Q7Z494 1330 aa29.44■■■□□ 2.3
CLN3-240ENST00000631023 FOXO3O43524 673 aa29.41■■■□□ 2.3
CLN3-240ENST00000631023 USP32Q8NFA0 1604 aa29.41■■■□□ 2.3
CLN3-240ENST00000631023 TULP4Q9NRJ4 1543 aa29.41■■■□□ 2.3
CLN3-240ENST00000631023 PHF8Q9UPP1 1060 aa29.4■■■□□ 2.3
CLN3-240ENST00000631023 SHPRHQ149N8 1683 aa29.4■■■□□ 2.3
CLN3-240ENST00000631023 SOS2Q07890 1332 aaPredicted RBP29.4■■■□□ 2.3
CLN3-240ENST00000631023 CDK19Q9BWU1 502 aa29.39■■■□□ 2.3
CLN3-240ENST00000631023 MED1Q15648 1581 aaPredicted RBP29.38■■■□□ 2.29
CLN3-240ENST00000631023 ITSN1Q15811 1721 aa29.37■■■□□ 2.29
CLN3-240ENST00000631023 DISP3Q9P2K9 1392 aa29.35■■■□□ 2.29
CLN3-240ENST00000631023 SPATA31A6Q5VVP1 1343 aa29.34■■■□□ 2.29
CLN3-240ENST00000631023 NUDT16Q96DE0 195 aaKnown RBP29.34■■■□□ 2.29
CLN3-240ENST00000631023 PRR36Q9H6K5 1346 aa29.34■■■□□ 2.29
CLN3-240ENST00000631023 PMFBP1Q8TBY8 1022 aa29.32■■■□□ 2.28
CLN3-240ENST00000631023 PXDNQ92626 1479 aa29.32■■■□□ 2.28
CLN3-240ENST00000631023 SRPK2P78362 688 aaKnown RBP29.31■■■□□ 2.28
CLN3-240ENST00000631023 EVC2Q86UK5 1308 aa29.31■■■□□ 2.28
CLN3-240ENST00000631023 XPCQ01831 940 aaPredicted RBP29.3■■■□□ 2.28
CLN3-240ENST00000631023 PSME1Q06323 249 aa29.3■■■□□ 2.28
CLN3-240ENST00000631023 ATP7BP35670 1465 aa29.3■■■□□ 2.28
CLN3-240ENST00000631023 KRT28Q7Z3Y7 464 aa29.3■■■□□ 2.28
CLN3-240ENST00000631023 CCDC61Q9Y6R9 512 aa29.29■■■□□ 2.28
CLN3-240ENST00000631023 PNPLA6Q8IY17 1366 aa29.28■■■□□ 2.28
CLN3-240ENST00000631023 NGDNQ8NEJ9 315 aaKnown RBP29.26■■■□□ 2.28
CLN3-240ENST00000631023 PHF23Q9BUL5 403 aaPredicted RBP29.26■■■□□ 2.28
CLN3-240ENST00000631023 CABP2Q9NPB3 220 aa29.25■■■□□ 2.27
CLN3-240ENST00000631023 SBNO2Q9Y2G9 1366 aa29.25■■■□□ 2.27
CLN3-240ENST00000631023 TOPAZ1Q8N9V7 1692 aa29.25■■■□□ 2.27
CLN3-240ENST00000631023 NUTM2BA6NNL0 878 aaPredicted RBP29.22■■■□□ 2.27
CLN3-240ENST00000631023 NUTM2EB1AL46 878 aaPredicted RBP29.22■■■□□ 2.27
CLN3-240ENST00000631023 NUTM2AQ8IVF1 878 aaPredicted RBP29.22■■■□□ 2.27
CLN3-240ENST00000631023 SPATA31A3Q5VYP0 1347 aa29.21■■■□□ 2.27
CLN3-240ENST00000631023 PLEKHG3A1L390 1219 aa29.2■■■□□ 2.26
CLN3-240ENST00000631023 SLC24A1O60721 1099 aa29.2■■■□□ 2.26
CLN3-240ENST00000631023 MEX3CQ5U5Q3 659 aaKnown RBP29.2■■■□□ 2.26
CLN3-240ENST00000631023 SBNO1A3KN83 1393 aa29.19■■■□□ 2.26
CLN3-240ENST00000631023 COL22A1Q8NFW1 1626 aaPredicted RBP29.19■■■□□ 2.26
CLN3-240ENST00000631023 ST20-MTHFSA0A0A6YYL1 179 aa29.18■■■□□ 2.26
CLN3-240ENST00000631023 LRP6O75581 1613 aa29.17■■■□□ 2.26
CLN3-240ENST00000631023 USP47Q96K76 1375 aa29.17■■■□□ 2.26
CLN3-240ENST00000631023 TNS3Q68CZ2 1445 aa29.17■■■□□ 2.26
CLN3-240ENST00000631023 PPIP5K1Q6PFW1 1433 aa29.17■■■□□ 2.26
CLN3-240ENST00000631023 ACEP12821 1306 aa29.16■■■□□ 2.26
CLN3-240ENST00000631023 POLR3AO14802 1390 aaPredicted RBP29.16■■■□□ 2.26
CLN3-240ENST00000631023 TRPM3Q9HCF6 1732 aaPredicted RBP29.15■■■□□ 2.26
CLN3-240ENST00000631023 LMOD2Q6P5Q4 547 aa29.14■■■□□ 2.26
CLN3-240ENST00000631023 ARHGEF10O15013 1369 aa29.13■■■□□ 2.25
CLN3-240ENST00000631023 ATAD2Q6PL18 1390 aa29.13■■■□□ 2.25
CLN3-240ENST00000631023 CABP1Q9NZU7 370 aa29.13■■■□□ 2.25
CLN3-240ENST00000631023 PAK3O75914 559 aaPredicted RBP29.11■■■□□ 2.25
CLN3-240ENST00000631023 TESK2Q96S53 571 aa29.11■■■□□ 2.25
CLN3-240ENST00000631023 ALS2Q96Q42 1657 aa29.09■■■□□ 2.25
CLN3-240ENST00000631023 ADAMTS2O95450 1211 aa29.08■■■□□ 2.25
CLN3-240ENST00000631023 PUS7Q96PZ0 661 aaKnown RBP29.08■■■□□ 2.25
CLN3-240ENST00000631023 MARF1Q9Y4F3 1742 aaKnown RBP29.07■■■□□ 2.24
CLN3-240ENST00000631023 HAP1P54257 671 aaPredicted RBP29.05■■■□□ 2.24
CLN3-240ENST00000631023 RGS17Q9UGC6 210 aaPredicted RBP29.05■■■□□ 2.24
CLN3-240ENST00000631023 C8orf37Q96NL8 207 aa29.04■■■□□ 2.24
CLN3-240ENST00000631023 ZNF692Q9BU19 519 aaPredicted RBP29.04■■■□□ 2.24
CLN3-240ENST00000631023 BRD4O60885 1362 aaPredicted RBP29.04■■■□□ 2.24
CLN3-240ENST00000631023 TMF1P82094 1093 aa29.03■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms