RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 ILDR2Q71H61 639 aa20.6■□□□□ 0.89
PNKP-223ENST00000629179 DDX17Q92841 729 aaKnown RBP20.6■□□□□ 0.89
PNKP-223ENST00000629179 ORAI2Q96SN7 254 aa20.6■□□□□ 0.89
PNKP-223ENST00000629179 NHSL1Q5SYE7 1610 aa20.6■□□□□ 0.89
PNKP-223ENST00000629179 CDC42BPGQ6DT37 1551 aa20.59■□□□□ 0.89
PNKP-223ENST00000629179 NEUROD1Q13562 356 aa20.59■□□□□ 0.89
PNKP-223ENST00000629179 SAFB2Q14151 953 aaKnown RBP eCLIP20.59■□□□□ 0.89
PNKP-223ENST00000629179 PRAM1Q96QH2 718 aa20.59■□□□□ 0.89
PNKP-223ENST00000629179 TRAK1Q9UPV9 953 aa20.59■□□□□ 0.89
PNKP-223ENST00000629179 JCADQ9P266 1359 aa20.59■□□□□ 0.89
PNKP-223ENST00000629179 NUTM2FA1L443 756 aa20.58■□□□□ 0.89
PNKP-223ENST00000629179 POGKQ9P215 609 aa20.57■□□□□ 0.88
PNKP-223ENST00000629179 DLC1Q96QB1 1528 aa20.57■□□□□ 0.88
PNKP-223ENST00000629179 L3MBTL2Q969R5 705 aa20.56■□□□□ 0.88
PNKP-223ENST00000629179 PHF23Q9BUL5 403 aaPredicted RBP20.56■□□□□ 0.88
PNKP-223ENST00000629179 RGPD8O14715 1765 aaPredicted RBP20.55■□□□□ 0.88
PNKP-223ENST00000629179 FMN2Q9NZ56 1722 aa20.55■□□□□ 0.88
PNKP-223ENST00000629179 ESCO1Q5FWF5 840 aa20.54■□□□□ 0.88
PNKP-223ENST00000629179 KIAA1210Q9ULL0 1709 aa20.53■□□□□ 0.88
PNKP-223ENST00000629179 SHPRHQ149N8 1683 aa20.53■□□□□ 0.88
PNKP-223ENST00000629179 NBPF1Q3BBV0 1214 aa20.51■□□□□ 0.87
PNKP-223ENST00000629179 LRRC59Q96AG4 307 aaKnown RBP20.51■□□□□ 0.87
PNKP-223ENST00000629179 ARHGEF28Q8N1W1 1705 aaKnown RBP20.5■□□□□ 0.87
PNKP-223ENST00000629179 HIRIP3Q9BW71 556 aaPredicted RBP20.49■□□□□ 0.87
PNKP-223ENST00000629179 MINK1Q8N4C8 1332 aaPredicted RBP20.49■□□□□ 0.87
PNKP-223ENST00000629179 RGS17Q9UGC6 210 aaPredicted RBP20.48■□□□□ 0.87
PNKP-223ENST00000629179 SOS2Q07890 1332 aaPredicted RBP20.48■□□□□ 0.87
PNKP-223ENST00000629179 SPATA31A6Q5VVP1 1343 aa20.48■□□□□ 0.87
PNKP-223ENST00000629179 FOXO3O43524 673 aa20.47■□□□□ 0.87
PNKP-223ENST00000629179 LRP6O75581 1613 aa20.46■□□□□ 0.87
PNKP-223ENST00000629179 NUTM2BA6NNL0 878 aaPredicted RBP20.46■□□□□ 0.87
PNKP-223ENST00000629179 NUTM2EB1AL46 878 aaPredicted RBP20.46■□□□□ 0.87
PNKP-223ENST00000629179 NUTM2AQ8IVF1 878 aaPredicted RBP20.46■□□□□ 0.87
PNKP-223ENST00000629179 XPCQ01831 940 aaPredicted RBP20.45■□□□□ 0.86
PNKP-223ENST00000629179 ADGRB2O60241 1585 aa20.45■□□□□ 0.86
PNKP-223ENST00000629179 NPHP3Q7Z494 1330 aa20.45■□□□□ 0.86
PNKP-223ENST00000629179 PNPLA6Q8IY17 1366 aa20.45■□□□□ 0.86
PNKP-223ENST00000629179 USP32Q8NFA0 1604 aa20.42■□□□□ 0.86
PNKP-223ENST00000629179 KIF1AQ12756 1690 aa20.42■□□□□ 0.86
PNKP-223ENST00000629179 MEX3CQ5U5Q3 659 aaKnown RBP20.42■□□□□ 0.86
PNKP-223ENST00000629179 PHF8Q9UPP1 1060 aa20.42■□□□□ 0.86
PNKP-223ENST00000629179 PXDNQ92626 1479 aa20.42■□□□□ 0.86
PNKP-223ENST00000629179 WASLO00401 505 aaPredicted RBP20.41■□□□□ 0.86
PNKP-223ENST00000629179 TRPM1Q7Z4N2 1603 aa20.41■□□□□ 0.86
PNKP-223ENST00000629179 NBPF8Q3BBV2 869 aa20.39■□□□□ 0.85
PNKP-223ENST00000629179 POTEAQ6S8J7 498 aa20.39■□□□□ 0.85
PNKP-223ENST00000629179 PCGF6Q9BYE7 350 aa20.39■□□□□ 0.85
PNKP-223ENST00000629179 ANKARQ7Z5J8 1434 aa20.38■□□□□ 0.85
PNKP-223ENST00000629179 PRR36Q9H6K5 1346 aa20.38■□□□□ 0.85
PNKP-223ENST00000629179 PMFBP1Q8TBY8 1022 aa20.38■□□□□ 0.85
PNKP-223ENST00000629179 KRT28Q7Z3Y7 464 aa20.37■□□□□ 0.85
PNKP-223ENST00000629179 TONSLQ96HA7 1378 aa20.36■□□□□ 0.85
PNKP-223ENST00000629179 TULP4Q9NRJ4 1543 aa20.36■□□□□ 0.85
PNKP-223ENST00000629179 EIF3AQ14152 1382 aaKnown RBP20.35■□□□□ 0.85
PNKP-223ENST00000629179 CDK19Q9BWU1 502 aa20.35■□□□□ 0.85
PNKP-223ENST00000629179 CENPJQ9HC77 1338 aaPredicted RBP20.34■□□□□ 0.85
PNKP-223ENST00000629179 SOCS7O14512 581 aa20.34■□□□□ 0.85
PNKP-223ENST00000629179 COL22A1Q8NFW1 1626 aaPredicted RBP20.34■□□□□ 0.85
PNKP-223ENST00000629179 ROCK2O75116 1388 aaKnown RBP20.34■□□□□ 0.85
PNKP-223ENST00000629179 ADAMTS2O95450 1211 aa20.33■□□□□ 0.85
PNKP-223ENST00000629179 PSME1Q06323 249 aa20.33■□□□□ 0.85
PNKP-223ENST00000629179 QRICH2Q9H0J4 1663 aa20.32■□□□□ 0.84
PNKP-223ENST00000629179 SPATA31A3Q5VYP0 1347 aa20.32■□□□□ 0.84
PNKP-223ENST00000629179 NUDT16Q96DE0 195 aaKnown RBP20.32■□□□□ 0.84
PNKP-223ENST00000629179 C8orf37Q96NL8 207 aa20.31■□□□□ 0.84
PNKP-223ENST00000629179 ITSN1Q15811 1721 aa20.3■□□□□ 0.84
PNKP-223ENST00000629179 ATP7BP35670 1465 aa20.3■□□□□ 0.84
PNKP-223ENST00000629179 AFF2P51816 1311 aa20.29■□□□□ 0.84
PNKP-223ENST00000629179 ZNF772Q68DY9 489 aaPredicted RBP20.29■□□□□ 0.84
PNKP-223ENST00000629179 NGDNQ8NEJ9 315 aaKnown RBP20.28■□□□□ 0.84
PNKP-223ENST00000629179 TNS3Q68CZ2 1445 aa20.27■□□□□ 0.84
PNKP-223ENST00000629179 SBNO1A3KN83 1393 aa20.27■□□□□ 0.84
PNKP-223ENST00000629179 LMOD2Q6P5Q4 547 aa20.27■□□□□ 0.84
PNKP-223ENST00000629179 NGLY1Q96IV0 654 aa20.27■□□□□ 0.84
PNKP-223ENST00000629179 TRPM3Q9HCF6 1732 aaPredicted RBP20.27■□□□□ 0.83
PNKP-223ENST00000629179 MARF1Q9Y4F3 1742 aaKnown RBP20.27■□□□□ 0.83
PNKP-223ENST00000629179 GPRASP1Q5JY77 1395 aa20.26■□□□□ 0.83
PNKP-223ENST00000629179 PLEKHG5O94827 1062 aa20.25■□□□□ 0.83
PNKP-223ENST00000629179 SRPK2P78362 688 aaKnown RBP20.25■□□□□ 0.83
PNKP-223ENST00000629179 CABP2Q9NPB3 220 aa20.25■□□□□ 0.83
PNKP-223ENST00000629179 TOPAZ1Q8N9V7 1692 aa20.25■□□□□ 0.83
PNKP-223ENST00000629179 CABLES1Q8TDN4 633 aa20.24■□□□□ 0.83
PNKP-223ENST00000629179 CARD11Q9BXL7 1154 aa20.24■□□□□ 0.83
PNKP-223ENST00000629179 CCDC61Q9Y6R9 512 aa20.24■□□□□ 0.83
PNKP-223ENST00000629179 RALGAPBQ86X10 1494 aa20.23■□□□□ 0.83
PNKP-223ENST00000629179 ALS2Q96Q42 1657 aa20.22■□□□□ 0.83
PNKP-223ENST00000629179 PLEKHG3A1L390 1219 aa20.21■□□□□ 0.83
PNKP-223ENST00000629179 PAK3O75914 559 aaPredicted RBP20.21■□□□□ 0.83
PNKP-223ENST00000629179 ACEP12821 1306 aa20.21■□□□□ 0.83
PNKP-223ENST00000629179 ARHGEF10O15013 1369 aa20.21■□□□□ 0.83
PNKP-223ENST00000629179 QTRT2Q9H974 415 aaKnown RBP20.2■□□□□ 0.82
PNKP-223ENST00000629179 EVC2Q86UK5 1308 aa20.2■□□□□ 0.82
PNKP-223ENST00000629179 ABCA3Q99758 1704 aa20.19■□□□□ 0.82
PNKP-223ENST00000629179 RXRBP28702 533 aa20.19■□□□□ 0.82
PNKP-223ENST00000629179 HAP1P54257 671 aaPredicted RBP20.19■□□□□ 0.82
PNKP-223ENST00000629179 POLR3AO14802 1390 aaPredicted RBP20.19■□□□□ 0.82
PNKP-223ENST00000629179 PPIP5K1Q6PFW1 1433 aa20.19■□□□□ 0.82
PNKP-223ENST00000629179 FNBP4Q8N3X1 1017 aaPredicted RBP20.18■□□□□ 0.82
PNKP-223ENST00000629179 USP21Q9UK80 565 aa20.18■□□□□ 0.82
PNKP-223ENST00000629179 CLSPNQ9HAW4 1339 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms