RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 CFDP1Q9UEE9 299 aaPredicted RBP9.91□□□□□ -0.82
VPS11-209ENST00000622309 KIAA0556O60303 1618 aa9.9□□□□□ -0.82
VPS11-209ENST00000622309 MYCNP04198 464 aaPredicted RBP9.9□□□□□ -0.82
VPS11-209ENST00000622309 SKOR2Q2VWA4 1001 aaPredicted RBP9.9□□□□□ -0.82
VPS11-209ENST00000622309 NUP153P49790 1475 aaKnown RBP9.9□□□□□ -0.82
VPS11-209ENST00000622309 BRD4O60885 1362 aaPredicted RBP9.89□□□□□ -0.83
VPS11-209ENST00000622309 ARAP3Q8WWN8 1544 aa9.89□□□□□ -0.83
VPS11-209ENST00000622309 ZNF500O60304 480 aaPredicted RBP9.89□□□□□ -0.83
VPS11-209ENST00000622309 MPNDQ8N594 471 aa9.89□□□□□ -0.83
VPS11-209ENST00000622309 PTPRMP28827 1452 aa9.89□□□□□ -0.83
VPS11-209ENST00000622309 IRX3P78415 501 aaPredicted RBP9.89□□□□□ -0.83
VPS11-209ENST00000622309 HS1BP3Q53T59 392 aa9.89□□□□□ -0.83
VPS11-209ENST00000622309 LMTK3Q96Q04 1460 aa9.88□□□□□ -0.83
VPS11-209ENST00000622309 CDCA8Q53HL2 280 aa9.88□□□□□ -0.83
VPS11-209ENST00000622309 MYBBP1AQ9BQG0 1328 aaKnown RBP9.88□□□□□ -0.83
VPS11-209ENST00000622309 CLSTN1O94985 981 aa9.88□□□□□ -0.83
VPS11-209ENST00000622309 GBP4Q96PP9 640 aa9.88□□□□□ -0.83
VPS11-209ENST00000622309 PLCD4Q9BRC7 762 aa9.88□□□□□ -0.83
VPS11-209ENST00000622309 MAPK8IP3Q9UPT6 1336 aa9.88□□□□□ -0.83
VPS11-209ENST00000622309 PTMSP20962 102 aa9.88□□□□□ -0.83
VPS11-209ENST00000622309 MPHOSPH9Q99550 1183 aa9.88□□□□□ -0.83
VPS11-209ENST00000622309 NOL7Q9UMY1 257 aaKnown RBP9.88□□□□□ -0.83
VPS11-209ENST00000622309 ZNF771Q7L3S4 317 aaPredicted RBP9.87□□□□□ -0.83
VPS11-209ENST00000622309 TBC1D32Q96NH3 1257 aa9.87□□□□□ -0.83
VPS11-209ENST00000622309 ADAMTSL3P82987 1691 aa9.86□□□□□ -0.83
VPS11-209ENST00000622309 PLEKHD1A6NEE1 506 aa9.86□□□□□ -0.83
VPS11-209ENST00000622309 APPP05067 770 aa9.86□□□□□ -0.83
VPS11-209ENST00000622309 RALBP1Q15311 655 aa9.86□□□□□ -0.83
VPS11-209ENST00000622309 RAPGEF6Q8TEU7 1601 aa9.86□□□□□ -0.83
VPS11-209ENST00000622309 NBPF8Q3BBV2 869 aa9.85□□□□□ -0.83
VPS11-209ENST00000622309 KIF15Q9NS87 1388 aa9.85□□□□□ -0.83
VPS11-209ENST00000622309 HSCBQ8IWL3 235 aa9.84□□□□□ -0.83
VPS11-209ENST00000622309 DNAJC2Q99543 621 aaKnown RBP9.84□□□□□ -0.83
VPS11-209ENST00000622309 MCM5P33992 734 aa9.83□□□□□ -0.84
VPS11-209ENST00000622309 KCNJ4P48050 445 aa9.83□□□□□ -0.84
VPS11-209ENST00000622309 ZKSCAN5Q9Y2L8 839 aa9.83□□□□□ -0.84
VPS11-209ENST00000622309 ABCA8O94911 1581 aa9.83□□□□□ -0.84
VPS11-209ENST00000622309 GOLGA6L22H0YM25 854 aa9.83□□□□□ -0.84
VPS11-209ENST00000622309 VGFO15240 615 aaPredicted RBP9.83□□□□□ -0.84
VPS11-209ENST00000622309 FOXD4L5Q5VV16 416 aaPredicted RBP9.83□□□□□ -0.84
VPS11-209ENST00000622309 AEBP1Q8IUX7 1158 aa9.83□□□□□ -0.84
VPS11-209ENST00000622309 FOXD4L4Q8WXT5 416 aaPredicted RBP9.83□□□□□ -0.84
VPS11-209ENST00000622309 DAPK1P53355 1430 aa9.83□□□□□ -0.84
VPS11-209ENST00000622309 ABCC5O15440 1437 aa9.83□□□□□ -0.84
VPS11-209ENST00000622309 MIA2Q96PC5 1412 aa9.83□□□□□ -0.84
VPS11-209ENST00000622309 TCOF1Q13428 1488 aaKnown RBP9.82□□□□□ -0.84
VPS11-209ENST00000622309 SPATA31E1Q6ZUB1 1445 aa9.82□□□□□ -0.84
VPS11-209ENST00000622309 NLRP13Q86W25 1043 aa9.82□□□□□ -0.84
VPS11-209ENST00000622309 C1orf115Q9H7X2 142 aa9.82□□□□□ -0.84
VPS11-209ENST00000622309 ROCK2O75116 1388 aaKnown RBP9.82□□□□□ -0.84
VPS11-209ENST00000622309 SPDYE4A6NLX3 237 aa9.82□□□□□ -0.84
VPS11-209ENST00000622309 MYRIPQ8NFW9 859 aa9.82□□□□□ -0.84
VPS11-209ENST00000622309 PANK3Q9H999 370 aa9.82□□□□□ -0.84
VPS11-209ENST00000622309 TROQ12816 1431 aaPredicted RBP9.82□□□□□ -0.84
VPS11-209ENST00000622309 HNRNPMP52272 730 aaKnown RBP eCLIP9.81□□□□□ -0.84
VPS11-209ENST00000622309 IRX5P78411 483 aaPredicted RBP9.81□□□□□ -0.84
VPS11-209ENST00000622309 ATP2B3Q16720 1220 aa9.81□□□□□ -0.84
VPS11-209ENST00000622309 NBPF1Q3BBV0 1214 aa9.81□□□□□ -0.84
VPS11-209ENST00000622309 TNPO1Q92973 898 aaKnown RBP9.81□□□□□ -0.84
VPS11-209ENST00000622309 KIF14Q15058 1648 aa9.81□□□□□ -0.84
VPS11-209ENST00000622309 PIAS4Q8N2W9 510 aaPredicted RBP9.81□□□□□ -0.84
VPS11-209ENST00000622309 SLC52A1Q9NWF4 448 aa9.81□□□□□ -0.84
VPS11-209ENST00000622309 BCORL1Q5H9F3 1711 aa9.81□□□□□ -0.84
VPS11-209ENST00000622309 NEO1Q92859 1461 aa9.81□□□□□ -0.84
VPS11-209ENST00000622309 HMGN5P82970 282 aaKnown RBP9.8□□□□□ -0.84
VPS11-209ENST00000622309 RGS22Q8NE09 1264 aa9.8□□□□□ -0.84
VPS11-209ENST00000622309 ZBTB7CA1YPR0 619 aa9.8□□□□□ -0.84
VPS11-209ENST00000622309 CCDC39Q9UFE4 941 aa9.8□□□□□ -0.84
VPS11-209ENST00000622309 DDX49Q9Y6V7 483 aaKnown RBP9.8□□□□□ -0.84
VPS11-209ENST00000622309 SOCS7O14512 581 aa9.8□□□□□ -0.84
VPS11-209ENST00000622309 KDM4AO75164 1064 aa9.8□□□□□ -0.84
VPS11-209ENST00000622309 CERKQ8TCT0 537 aa9.8□□□□□ -0.84
VPS11-209ENST00000622309 DENND4BO75064 1496 aaPredicted RBP9.79□□□□□ -0.84
VPS11-209ENST00000622309 CCDC66A2RUB6 948 aa9.79□□□□□ -0.84
VPS11-209ENST00000622309 IGHDP01880 384 aa9.79□□□□□ -0.84
VPS11-209ENST00000622309 CHMP4CQ96CF2 233 aa9.79□□□□□ -0.84
VPS11-209ENST00000622309 NLRP1Q9C000 1473 aa9.79□□□□□ -0.84
VPS11-209ENST00000622309 PDCL2Q8N4E4 241 aa9.79□□□□□ -0.84
VPS11-209ENST00000622309 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.79□□□□□ -0.84
VPS11-209ENST00000622309 HDAC5Q9UQL6 1122 aa9.79□□□□□ -0.84
VPS11-209ENST00000622309 PTMAP06454 111 aaKnown RBP9.78□□□□□ -0.84
VPS11-209ENST00000622309 TSC1Q92574 1164 aa9.78□□□□□ -0.84
VPS11-209ENST00000622309 PRIMPOLQ96LW4 560 aa9.78□□□□□ -0.84
VPS11-209ENST00000622309 C22orf23Q9BZE7 217 aa9.78□□□□□ -0.84
VPS11-209ENST00000622309 CAMSAP2Q08AD1 1489 aa9.78□□□□□ -0.84
VPS11-209ENST00000622309 GPATCH8Q9UKJ3 1502 aaKnown RBP9.78□□□□□ -0.84
VPS11-209ENST00000622309 MADDQ8WXG6 1647 aa9.78□□□□□ -0.84
VPS11-209ENST00000622309 ABCA9Q8IUA7 1624 aa9.78□□□□□ -0.84
VPS11-209ENST00000622309 KAT6BQ8WYB5 2073 aa9.78□□□□□ -0.84
VPS11-209ENST00000622309 KIF3AQ9Y496 699 aa9.78□□□□□ -0.84
VPS11-209ENST00000622309 POGZQ7Z3K3 1410 aa9.78□□□□□ -0.84
VPS11-209ENST00000622309 HSP90AB1P08238 724 aaKnown RBP9.77□□□□□ -0.84
VPS11-209ENST00000622309 RBM25P49756 843 aaKnown RBP9.77□□□□□ -0.84
VPS11-209ENST00000622309 KIAA2012Q0VF49 1180 aa9.77□□□□□ -0.84
VPS11-209ENST00000622309 FAM177A1Q8N128 213 aaPredicted RBP9.77□□□□□ -0.84
VPS11-209ENST00000622309 ZNF710Q8N1W2 664 aa9.77□□□□□ -0.84
VPS11-209ENST00000622309 CIZ1Q9ULV3 898 aaPredicted RBP9.77□□□□□ -0.84
VPS11-209ENST00000622309 POLR1AO95602 1720 aaPredicted RBP9.77□□□□□ -0.84
VPS11-209ENST00000622309 ATP10BO94823 1461 aa9.77□□□□□ -0.85
VPS11-209ENST00000622309 SLC20A2Q08357 652 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms