RNA–Protein interactions for RNA: ENST00000620514.1

HMGN3-203, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 3 BASIC

Gene HMGN3, Length 1,010 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-203ENST00000620514 YTHDC2Q9H6S0 1430 aaKnown RBP25.24■■□□□ 1.63
HMGN3-203ENST00000620514 PLEKHH1Q9ULM0 1364 aa25.24■■□□□ 1.63
HMGN3-203ENST00000620514 KNDC1Q76NI1 1749 aa25.23■■□□□ 1.63
HMGN3-203ENST00000620514 CDC42BPGQ6DT37 1551 aa25.21■■□□□ 1.63
HMGN3-203ENST00000620514 NUTM2BA6NNL0 878 aaPredicted RBP25.19■■□□□ 1.62
HMGN3-203ENST00000620514 NUTM2EB1AL46 878 aaPredicted RBP25.19■■□□□ 1.62
HMGN3-203ENST00000620514 NUTM2AQ8IVF1 878 aaPredicted RBP25.19■■□□□ 1.62
HMGN3-203ENST00000620514 LRRC59Q96AG4 307 aaKnown RBP25.19■■□□□ 1.62
HMGN3-203ENST00000620514 MEX3CQ5U5Q3 659 aaKnown RBP25.18■■□□□ 1.62
HMGN3-203ENST00000620514 LAMC1P11047 1609 aa25.17■■□□□ 1.62
HMGN3-203ENST00000620514 KDM2AQ9Y2K7 1162 aa25.17■■□□□ 1.62
HMGN3-203ENST00000620514 DHX57Q6P158 1386 aaKnown RBP25.16■■□□□ 1.62
HMGN3-203ENST00000620514 NUTM2FA1L443 756 aa25.15■■□□□ 1.62
HMGN3-203ENST00000620514 DCAF11Q8TEB1 546 aa25.15■■□□□ 1.62
HMGN3-203ENST00000620514 PNPLA6Q8IY17 1366 aa25.15■■□□□ 1.62
HMGN3-203ENST00000620514 ESCO1Q5FWF5 840 aa25.14■■□□□ 1.62
HMGN3-203ENST00000620514 SIRT1Q96EB6 747 aa25.14■■□□□ 1.62
HMGN3-203ENST00000620514 SOS2Q07890 1332 aaPredicted RBP25.13■■□□□ 1.61
HMGN3-203ENST00000620514 ADGRB1O14514 1584 aa25.1■■□□□ 1.61
HMGN3-203ENST00000620514 PRAM1Q96QH2 718 aa25.1■■□□□ 1.61
HMGN3-203ENST00000620514 SAFB2Q14151 953 aaKnown RBP eCLIP25.09■■□□□ 1.61
HMGN3-203ENST00000620514 FMN2Q9NZ56 1722 aa25.09■■□□□ 1.61
HMGN3-203ENST00000620514 FOXO3O43524 673 aa25.06■■□□□ 1.6
HMGN3-203ENST00000620514 XPCQ01831 940 aaPredicted RBP25.06■■□□□ 1.6
HMGN3-203ENST00000620514 NPHP3Q7Z494 1330 aa25.06■■□□□ 1.6
HMGN3-203ENST00000620514 DLC1Q96QB1 1528 aa25.06■■□□□ 1.6
HMGN3-203ENST00000620514 PXDNQ92626 1479 aa25.05■■□□□ 1.6
HMGN3-203ENST00000620514 ZNF772Q68DY9 489 aaPredicted RBP25.05■■□□□ 1.6
HMGN3-203ENST00000620514 TRAK1Q9UPV9 953 aa25.05■■□□□ 1.6
HMGN3-203ENST00000620514 STAC3Q96MF2 364 aa25.04■■□□□ 1.6
HMGN3-203ENST00000620514 POGKQ9P215 609 aa25.04■■□□□ 1.6
HMGN3-203ENST00000620514 AFF2P51816 1311 aa25.03■■□□□ 1.6
HMGN3-203ENST00000620514 C8orf37Q96NL8 207 aa25.02■■□□□ 1.6
HMGN3-203ENST00000620514 ADAMTS2O95450 1211 aa25.01■■□□□ 1.59
HMGN3-203ENST00000620514 RGPD8O14715 1765 aaPredicted RBP24.99■■□□□ 1.59
HMGN3-203ENST00000620514 COL22A1Q8NFW1 1626 aaPredicted RBP24.97■■□□□ 1.59
HMGN3-203ENST00000620514 HIRIP3Q9BW71 556 aaPredicted RBP24.97■■□□□ 1.59
HMGN3-203ENST00000620514 KIF1AQ12756 1690 aa24.97■■□□□ 1.59
HMGN3-203ENST00000620514 MINK1Q8N4C8 1332 aaPredicted RBP24.96■■□□□ 1.59
HMGN3-203ENST00000620514 PHF8Q9UPP1 1060 aa24.96■■□□□ 1.59
HMGN3-203ENST00000620514 ADGRB2O60241 1585 aa24.95■■□□□ 1.58
HMGN3-203ENST00000620514 NGLY1Q96IV0 654 aa24.94■■□□□ 1.58
HMGN3-203ENST00000620514 RXRBP28702 533 aa24.93■■□□□ 1.58
HMGN3-203ENST00000620514 KRT28Q7Z3Y7 464 aa24.93■■□□□ 1.58
HMGN3-203ENST00000620514 USP32Q8NFA0 1604 aa24.93■■□□□ 1.58
HMGN3-203ENST00000620514 SPATA31A3Q5VYP0 1347 aa24.9■■□□□ 1.58
HMGN3-203ENST00000620514 ARHGEF28Q8N1W1 1705 aaKnown RBP24.9■■□□□ 1.58
HMGN3-203ENST00000620514 ANKARQ7Z5J8 1434 aa24.9■■□□□ 1.58
HMGN3-203ENST00000620514 PMFBP1Q8TBY8 1022 aa24.89■■□□□ 1.58
HMGN3-203ENST00000620514 QTRT2Q9H974 415 aaKnown RBP24.89■■□□□ 1.58
HMGN3-203ENST00000620514 PRR36Q9H6K5 1346 aa24.88■■□□□ 1.57
HMGN3-203ENST00000620514 SIN3AQ96ST3 1273 aa24.88■■□□□ 1.57
HMGN3-203ENST00000620514 WASLO00401 505 aaPredicted RBP24.87■■□□□ 1.57
HMGN3-203ENST00000620514 NBPF1Q3BBV0 1214 aa24.87■■□□□ 1.57
HMGN3-203ENST00000620514 KIAA1210Q9ULL0 1709 aa24.86■■□□□ 1.57
HMGN3-203ENST00000620514 USP21Q9UK80 565 aa24.85■■□□□ 1.57
HMGN3-203ENST00000620514 TULP4Q9NRJ4 1543 aa24.85■■□□□ 1.57
HMGN3-203ENST00000620514 TNS3Q68CZ2 1445 aa24.85■■□□□ 1.57
HMGN3-203ENST00000620514 PSME1Q06323 249 aa24.84■■□□□ 1.57
HMGN3-203ENST00000620514 FNBP4Q8N3X1 1017 aaPredicted RBP24.84■■□□□ 1.57
HMGN3-203ENST00000620514 L3MBTL2Q969R5 705 aa24.84■■□□□ 1.57
HMGN3-203ENST00000620514 CDK12Q9NYV4 1490 aaPredicted RBP24.83■■□□□ 1.57
HMGN3-203ENST00000620514 RBM6P78332 1123 aaKnown RBP24.83■■□□□ 1.57
HMGN3-203ENST00000620514 EIF3AQ14152 1382 aaKnown RBP24.82■■□□□ 1.56
HMGN3-203ENST00000620514 SBNO1A3KN83 1393 aa24.81■■□□□ 1.56
HMGN3-203ENST00000620514 MARF1Q9Y4F3 1742 aaKnown RBP24.81■■□□□ 1.56
HMGN3-203ENST00000620514 PLEKHG5O94827 1062 aa24.81■■□□□ 1.56
HMGN3-203ENST00000620514 NEUROD1Q13562 356 aa24.81■■□□□ 1.56
HMGN3-203ENST00000620514 RGS12O14924 1447 aa24.8■■□□□ 1.56
HMGN3-203ENST00000620514 LMOD2Q6P5Q4 547 aa24.79■■□□□ 1.56
HMGN3-203ENST00000620514 CABLES1Q8TDN4 633 aa24.79■■□□□ 1.56
HMGN3-203ENST00000620514 TRPC5Q9UL62 973 aaPredicted RBP24.78■■□□□ 1.56
HMGN3-203ENST00000620514 ATRNO75882 1429 aa24.78■■□□□ 1.56
HMGN3-203ENST00000620514 BCL9LQ86UU0 1499 aa24.77■■□□□ 1.56
HMGN3-203ENST00000620514 ATP7BP35670 1465 aa24.77■■□□□ 1.56
HMGN3-203ENST00000620514 NUDT16Q96DE0 195 aaKnown RBP24.76■■□□□ 1.55
HMGN3-203ENST00000620514 CDK19Q9BWU1 502 aa24.76■■□□□ 1.55
HMGN3-203ENST00000620514 TRPM3Q9HCF6 1732 aaPredicted RBP24.75■■□□□ 1.55
HMGN3-203ENST00000620514 ARHGEF10O15013 1369 aa24.75■■□□□ 1.55
HMGN3-203ENST00000620514 GPRASP1Q5JY77 1395 aa24.75■■□□□ 1.55
HMGN3-203ENST00000620514 HAP1P54257 671 aaPredicted RBP24.74■■□□□ 1.55
HMGN3-203ENST00000620514 NGDNQ8NEJ9 315 aaKnown RBP24.74■■□□□ 1.55
HMGN3-203ENST00000620514 UPF1Q92900 1129 aaKnown RBP eCLIP24.74■■□□□ 1.55
HMGN3-203ENST00000620514 ABCA3Q99758 1704 aa24.72■■□□□ 1.55
HMGN3-203ENST00000620514 SLIT2O94813 1529 aa24.71■■□□□ 1.55
HMGN3-203ENST00000620514 ITSN1Q15811 1721 aa24.7■■□□□ 1.54
HMGN3-203ENST00000620514 CENPJQ9HC77 1338 aaPredicted RBP24.7■■□□□ 1.54
HMGN3-203ENST00000620514 ALS2Q96Q42 1657 aa24.7■■□□□ 1.54
HMGN3-203ENST00000620514 TRPM1Q7Z4N2 1603 aa24.68■■□□□ 1.54
HMGN3-203ENST00000620514 UNC5CLQ8IV45 518 aa24.68■■□□□ 1.54
HMGN3-203ENST00000620514 TOPAZ1Q8N9V7 1692 aa24.67■■□□□ 1.54
HMGN3-203ENST00000620514 PAK3O75914 559 aaPredicted RBP24.67■■□□□ 1.54
HMGN3-203ENST00000620514 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.66■■□□□ 1.54
HMGN3-203ENST00000620514 TRIM26Q12899 539 aaPredicted RBP24.66■■□□□ 1.54
HMGN3-203ENST00000620514 GJD4Q96KN9 370 aaPredicted RBP24.66■■□□□ 1.54
HMGN3-203ENST00000620514 CCDC61Q9Y6R9 512 aa24.65■■□□□ 1.54
HMGN3-203ENST00000620514 QRICH2Q9H0J4 1663 aa24.65■■□□□ 1.54
HMGN3-203ENST00000620514 ACEP12821 1306 aa24.64■■□□□ 1.54
HMGN3-203ENST00000620514 FAM83GA6ND36 823 aa24.64■■□□□ 1.54
HMGN3-203ENST00000620514 PLCH1Q4KWH8 1693 aa24.63■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms