RNA–Protein interactions for RNA: ENST00000620507.4

RBFOX1-223, Transcript of RNA binding fox-1 homolog 1, human

TSL 5 BASIC

Gene RBFOX1, Length 4,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBFOX1-223	ENST00000620507	PLEKHH1	Q9ULM0	1364 aa		11.7	□□□□□ -0.54
RBFOX1-223	ENST00000620507	NUTM2F	A1L443	756 aa		11.7	□□□□□ -0.54
RBFOX1-223	ENST00000620507	UNC13B	O14795	1591 aa		11.69	□□□□□ -0.54
RBFOX1-223	ENST00000620507	DZIP1L	Q8IYY4	767 aa	Known RBP	11.69	□□□□□ -0.54
RBFOX1-223	ENST00000620507	CABP1	Q9NZU7	370 aa		11.69	□□□□□ -0.54
RBFOX1-223	ENST00000620507	PIK3C2G	O75747	1445 aa		11.69	□□□□□ -0.54
RBFOX1-223	ENST00000620507	CDK19	Q9BWU1	502 aa		11.69	□□□□□ -0.54
RBFOX1-223	ENST00000620507	NKTR	P30414	1462 aa	Known RBP	11.69	□□□□□ -0.54
RBFOX1-223	ENST00000620507	COG3	Q96JB2	828 aa		11.69	□□□□□ -0.54
RBFOX1-223	ENST00000620507	PRDM15	P57071	1507 aa	Predicted RBP	11.68	□□□□□ -0.54
RBFOX1-223	ENST00000620507	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.68	□□□□□ -0.54
RBFOX1-223	ENST00000620507	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.68	□□□□□ -0.54
RBFOX1-223	ENST00000620507	ATAD2	Q6PL18	1390 aa		11.68	□□□□□ -0.54
RBFOX1-223	ENST00000620507	TRPM1	Q7Z4N2	1603 aa		11.68	□□□□□ -0.54
RBFOX1-223	ENST00000620507	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	11.68	□□□□□ -0.54
RBFOX1-223	ENST00000620507	NPC1L1	Q9UHC9	1359 aa		11.68	□□□□□ -0.54
RBFOX1-223	ENST00000620507	AAMP	Q13685	434 aa		11.67	□□□□□ -0.54
RBFOX1-223	ENST00000620507	MAGI2	Q86UL8	1455 aa		11.67	□□□□□ -0.54
RBFOX1-223	ENST00000620507	TRPM2	O94759	1503 aa		11.67	□□□□□ -0.54
RBFOX1-223	ENST00000620507	ELL2	O00472	640 aa	Predicted RBP	11.67	□□□□□ -0.54
RBFOX1-223	ENST00000620507	PTPRT	O14522	1441 aa		11.67	□□□□□ -0.54
RBFOX1-223	ENST00000620507	INSR	P06213	1382 aa		11.67	□□□□□ -0.54
RBFOX1-223	ENST00000620507	TSR2	Q969E8	191 aa	Known RBP	11.66	□□□□□ -0.54
RBFOX1-223	ENST00000620507	BLM	P54132	1417 aa	Predicted RBP	11.66	□□□□□ -0.54
RBFOX1-223	ENST00000620507	HAP1	P54257	671 aa	Predicted RBP	11.66	□□□□□ -0.54
RBFOX1-223	ENST00000620507	HMOX1	P09601	288 aa		11.66	□□□□□ -0.54
RBFOX1-223	ENST00000620507	EXOSC9	Q06265	439 aa	Known RBP	11.66	□□□□□ -0.54
RBFOX1-223	ENST00000620507	LMOD3	Q0VAK6	560 aa		11.66	□□□□□ -0.54
RBFOX1-223	ENST00000620507	DDX19B	Q9UMR2	479 aa		11.66	□□□□□ -0.54
RBFOX1-223	ENST00000620507	ZFYVE16	Q7Z3T8	1539 aa		11.65	□□□□□ -0.54
RBFOX1-223	ENST00000620507	EID1	Q9Y6B2	187 aa		11.65	□□□□□ -0.54
RBFOX1-223	ENST00000620507	ZBTB7C	A1YPR0	619 aa		11.65	□□□□□ -0.54
RBFOX1-223	ENST00000620507	PLEKHG5	O94827	1062 aa		11.65	□□□□□ -0.54
RBFOX1-223	ENST00000620507	USP35	Q9P2H5	1018 aa		11.65	□□□□□ -0.54
RBFOX1-223	ENST00000620507	POLR1A	O95602	1720 aa	Predicted RBP	11.65	□□□□□ -0.55
RBFOX1-223	ENST00000620507	SLK	Q9H2G2	1235 aa	Predicted RBP	11.64	□□□□□ -0.55
RBFOX1-223	ENST00000620507	POLR3A	O14802	1390 aa	Predicted RBP	11.64	□□□□□ -0.55
RBFOX1-223	ENST00000620507	NINL	Q9Y2I6	1382 aa		11.64	□□□□□ -0.55
RBFOX1-223	ENST00000620507	CFAP65	Q6ZU64	1925 aa	Known RBP	11.64	□□□□□ -0.55
RBFOX1-223	ENST00000620507	RARS	P54136	660 aa	Known RBP	11.64	□□□□□ -0.55
RBFOX1-223	ENST00000620507	PRKAR2B	P31323	418 aa		11.63	□□□□□ -0.55
RBFOX1-223	ENST00000620507	TXNDC2	Q86VQ3	553 aa		11.63	□□□□□ -0.55
RBFOX1-223	ENST00000620507	RTF1	Q92541	710 aa	Known RBP	11.63	□□□□□ -0.55
RBFOX1-223	ENST00000620507	ZMYM4	Q5VZL5	1548 aa		11.63	□□□□□ -0.55
RBFOX1-223	ENST00000620507	ARX	Q96QS3	562 aa		11.63	□□□□□ -0.55
RBFOX1-223	ENST00000620507	SPINK5	Q9NQ38	1064 aa	Predicted RBP	11.63	□□□□□ -0.55
RBFOX1-223	ENST00000620507	UGGT1	Q9NYU2	1555 aa		11.63	□□□□□ -0.55
RBFOX1-223	ENST00000620507	TMPO	P42166	694 aa	Known RBP	11.63	□□□□□ -0.55
RBFOX1-223	ENST00000620507	WAPL	Q7Z5K2	1190 aa		11.63	□□□□□ -0.55
RBFOX1-223	ENST00000620507	NPAT	Q14207	1427 aa		11.62	□□□□□ -0.55
RBFOX1-223	ENST00000620507	KIF16B	Q96L93	1317 aa		11.62	□□□□□ -0.55
RBFOX1-223	ENST00000620507	MFAP1	P55081	439 aa	Known RBP	11.62	□□□□□ -0.55
RBFOX1-223	ENST00000620507	SHROOM2	Q13796	1616 aa		11.62	□□□□□ -0.55
RBFOX1-223	ENST00000620507	ARAP3	Q8WWN8	1544 aa		11.62	□□□□□ -0.55
RBFOX1-223	ENST00000620507	NSD2	O96028	1365 aa		11.62	□□□□□ -0.55
RBFOX1-223	ENST00000620507	SPRYD3	Q8NCJ5	442 aa		11.62	□□□□□ -0.55
RBFOX1-223	ENST00000620507	POGZ	Q7Z3K3	1410 aa		11.62	□□□□□ -0.55
RBFOX1-223	ENST00000620507	ANKRD36B	Q8N2N9	1353 aa		11.62	□□□□□ -0.55
RBFOX1-223	ENST00000620507	NGDN	Q8NEJ9	315 aa	Known RBP	11.62	□□□□□ -0.55
RBFOX1-223	ENST00000620507	CT47B1	P0C2W7	299 aa	Predicted RBP	11.61	□□□□□ -0.55
RBFOX1-223	ENST00000620507	PUS7	Q96PZ0	661 aa	Known RBP	11.61	□□□□□ -0.55
RBFOX1-223	ENST00000620507	GNAI1	P63096	354 aa		11.6	□□□□□ -0.55
RBFOX1-223	ENST00000620507	HSCB	Q8IWL3	235 aa		11.6	□□□□□ -0.55
RBFOX1-223	ENST00000620507	PDZRN3	Q9UPQ7	1066 aa		11.59	□□□□□ -0.55
RBFOX1-223	ENST00000620507	SBNO2	Q9Y2G9	1366 aa		11.59	□□□□□ -0.55
RBFOX1-223	ENST00000620507	CLASP1	Q7Z460	1538 aa		11.59	□□□□□ -0.55
RBFOX1-223	ENST00000620507	TET3	O43151	1660 aa		11.59	□□□□□ -0.55
RBFOX1-223	ENST00000620507	MVP	Q14764	893 aa	Known RBP	11.59	□□□□□ -0.55
RBFOX1-223	ENST00000620507	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.59	□□□□□ -0.55
RBFOX1-223	ENST00000620507	FCHSD2	O94868	740 aa		11.59	□□□□□ -0.55
RBFOX1-223	ENST00000620507	TRH	P20396	242 aa	Predicted RBP	11.59	□□□□□ -0.55
RBFOX1-223	ENST00000620507	ERVK-7	P63135	1459 aa		11.59	□□□□□ -0.55
RBFOX1-223	ENST00000620507	FYB1	O15117	783 aa		11.58	□□□□□ -0.56
RBFOX1-223	ENST00000620507	NOB1	Q9ULX3	412 aa	Known RBP	11.58	□□□□□ -0.56
RBFOX1-223	ENST00000620507	MYOM2	P54296	1465 aa		11.58	□□□□□ -0.56
RBFOX1-223	ENST00000620507	CLTCL1	P53675	1640 aa		11.58	□□□□□ -0.56
RBFOX1-223	ENST00000620507	AMPH	P49418	695 aa		11.58	□□□□□ -0.56
RBFOX1-223	ENST00000620507	CASC1	Q6TDU7	716 aa		11.58	□□□□□ -0.56
RBFOX1-223	ENST00000620507	ATF7IP	Q6VMQ6	1270 aa		11.58	□□□□□ -0.56
RBFOX1-223	ENST00000620507	SYNM	O15061	1565 aa		11.58	□□□□□ -0.56
RBFOX1-223	ENST00000620507	APBB1	O00213	710 aa		11.57	□□□□□ -0.56
RBFOX1-223	ENST00000620507	GLIPR1L2	Q4G1C9	344 aa		11.57	□□□□□ -0.56
RBFOX1-223	ENST00000620507	KDM5A	P29375	1690 aa	Known RBP	11.57	□□□□□ -0.56
RBFOX1-223	ENST00000620507	ANKRD45	Q5TZF3	282 aa		11.57	□□□□□ -0.56
RBFOX1-223	ENST00000620507	DMRT2	Q9Y5R5	561 aa		11.57	□□□□□ -0.56
RBFOX1-223	ENST00000620507	HSP90AB1	P08238	724 aa	Known RBP	11.57	□□□□□ -0.56
RBFOX1-223	ENST00000620507	RTN4	Q9NQC3	1192 aa	Known RBP	11.57	□□□□□ -0.56
RBFOX1-223	ENST00000620507		E9PCH4	1651 aa		11.57	□□□□□ -0.56
RBFOX1-223	ENST00000620507	IGHD	P01880	384 aa		11.57	□□□□□ -0.56
RBFOX1-223	ENST00000620507	LMOD2	Q6P5Q4	547 aa		11.57	□□□□□ -0.56
RBFOX1-223	ENST00000620507	PODXL2	Q9NZ53	605 aa		11.57	□□□□□ -0.56
RBFOX1-223	ENST00000620507	CCDC61	Q9Y6R9	512 aa		11.57	□□□□□ -0.56
RBFOX1-223	ENST00000620507	PPP6R1	Q9UPN7	881 aa		11.56	□□□□□ -0.56
RBFOX1-223	ENST00000620507	CCDC27	Q2M243	656 aa		11.56	□□□□□ -0.56
RBFOX1-223	ENST00000620507	SSH1	Q8WYL5	1049 aa		11.56	□□□□□ -0.56
RBFOX1-223	ENST00000620507	SPHKAP	Q2M3C7	1700 aa		11.55	□□□□□ -0.56
RBFOX1-223	ENST00000620507	NUDT16	Q96DE0	195 aa	Known RBP	11.55	□□□□□ -0.56
RBFOX1-223	ENST00000620507	MLH3	Q9UHC1	1453 aa		11.55	□□□□□ -0.56
RBFOX1-223	ENST00000620507	ZNF692	Q9BU19	519 aa	Predicted RBP	11.55	□□□□□ -0.56
RBFOX1-223	ENST00000620507	LNPK	Q9C0E8	428 aa		11.55	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms