RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 DDX10Q13206 875 aaKnown RBP16.28■□□□□ 0.2
PDPN-211ENST00000617617 STRCP1A6NGW2 1772 aa16.28■□□□□ 0.2
PDPN-211ENST00000617617 NALCNQ8IZF0 1738 aa16.28■□□□□ 0.2
PDPN-211ENST00000617617 FMN2Q9NZ56 1722 aa16.28■□□□□ 0.2
PDPN-211ENST00000617617 PRAM1Q96QH2 718 aa16.27■□□□□ 0.2
PDPN-211ENST00000617617 CDC42BPGQ6DT37 1551 aa16.27■□□□□ 0.2
PDPN-211ENST00000617617 AKAP12Q02952 1782 aa16.27■□□□□ 0.19
PDPN-211ENST00000617617 PLEKHH1Q9ULM0 1364 aa16.25■□□□□ 0.19
PDPN-211ENST00000617617 ATAD2Q6PL18 1390 aa16.25■□□□□ 0.19
PDPN-211ENST00000617617 SLC26A8Q96RN1 970 aa16.25■□□□□ 0.19
PDPN-211ENST00000617617 STK26Q9P289 416 aa16.25■□□□□ 0.19
PDPN-211ENST00000617617 NCOA3Q9Y6Q9 1424 aa16.24■□□□□ 0.19
PDPN-211ENST00000617617 BCANQ96GW7 911 aa16.24■□□□□ 0.19
PDPN-211ENST00000617617 POGKQ9P215 609 aa16.24■□□□□ 0.19
PDPN-211ENST00000617617 NCKAP5LQ9HCH0 1330 aa16.24■□□□□ 0.19
PDPN-211ENST00000617617 KTN1Q86UP2 1357 aaKnown RBP16.24■□□□□ 0.19
PDPN-211ENST00000617617 AMOTL2Q9Y2J4 779 aa16.23■□□□□ 0.19
PDPN-211ENST00000617617 MON2Q7Z3U7 1717 aa16.23■□□□□ 0.19
PDPN-211ENST00000617617 ANKRD26Q9UPS8 1709 aa16.23■□□□□ 0.19
PDPN-211ENST00000617617 NPC1L1Q9UHC9 1359 aa16.23■□□□□ 0.19
PDPN-211ENST00000617617 ATP7BP35670 1465 aa16.22■□□□□ 0.19
PDPN-211ENST00000617617 XIRP1Q702N8 1843 aaKnown RBP16.22■□□□□ 0.19
PDPN-211ENST00000617617 KCNA6P17658 529 aa16.22■□□□□ 0.19
PDPN-211ENST00000617617 PER1O15534 1290 aaPredicted RBP16.2■□□□□ 0.18
PDPN-211ENST00000617617 ANKARQ7Z5J8 1434 aa16.2■□□□□ 0.18
PDPN-211ENST00000617617 WAPLQ7Z5K2 1190 aa16.19■□□□□ 0.18
PDPN-211ENST00000617617 KIF20BQ96Q89 1820 aa16.19■□□□□ 0.18
PDPN-211ENST00000617617 RGPD8O14715 1765 aaPredicted RBP16.18■□□□□ 0.18
PDPN-211ENST00000617617 CD163L1Q9NR16 1453 aa16.18■□□□□ 0.18
PDPN-211ENST00000617617 WASLO00401 505 aaPredicted RBP16.18■□□□□ 0.18
PDPN-211ENST00000617617 ADGRL3Q9HAR2 1447 aa16.18■□□□□ 0.18
PDPN-211ENST00000617617 ANKRD36BQ8N2N9 1353 aa16.18■□□□□ 0.18
PDPN-211ENST00000617617 NRKQ7Z2Y5 1582 aa16.17■□□□□ 0.18
PDPN-211ENST00000617617 MINK1Q8N4C8 1332 aaPredicted RBP16.16■□□□□ 0.18
PDPN-211ENST00000617617 CDK19Q9BWU1 502 aa16.16■□□□□ 0.18
PDPN-211ENST00000617617 DCCP43146 1447 aa16.15■□□□□ 0.18
PDPN-211ENST00000617617 CCER2I3L3R5 266 aa16.15■□□□□ 0.18
PDPN-211ENST00000617617 USP54Q70EL1 1684 aa16.15■□□□□ 0.18
PDPN-211ENST00000617617 ANP32CO43423 234 aa16.14■□□□□ 0.17
PDPN-211ENST00000617617 MIER1Q8N108 512 aa16.14■□□□□ 0.17
PDPN-211ENST00000617617 CPSF1Q10570 1443 aaKnown RBP16.14■□□□□ 0.17
PDPN-211ENST00000617617 PANK3Q9H999 370 aa16.14■□□□□ 0.17
PDPN-211ENST00000617617 SENP3Q9H4L4 574 aaPredicted RBP16.14■□□□□ 0.17
PDPN-211ENST00000617617 PARD3Q8TEW0 1356 aa16.13■□□□□ 0.17
PDPN-211ENST00000617617 HSPA2P54652 639 aa16.13■□□□□ 0.17
PDPN-211ENST00000617617 DMRT2Q9Y5R5 561 aa16.12■□□□□ 0.17
PDPN-211ENST00000617617 KIF1AQ12756 1690 aa16.12■□□□□ 0.17
PDPN-211ENST00000617617 NSD2O96028 1365 aa16.12■□□□□ 0.17
PDPN-211ENST00000617617 PRKRIP1Q9H875 184 aaPredicted RBP16.11■□□□□ 0.17
PDPN-211ENST00000617617 CABP2Q9NPB3 220 aa16.11■□□□□ 0.17
PDPN-211ENST00000617617 SAFB2Q14151 953 aaKnown RBP eCLIP16.11■□□□□ 0.17
PDPN-211ENST00000617617 PPIP5K1Q6PFW1 1433 aa16.1■□□□□ 0.17
PDPN-211ENST00000617617 SRPK2P78362 688 aaKnown RBP16.1■□□□□ 0.17
PDPN-211ENST00000617617 RALBP1Q15311 655 aa16.1■□□□□ 0.17
PDPN-211ENST00000617617 AMER1Q5JTC6 1135 aaPredicted RBP16.09■□□□□ 0.17
PDPN-211ENST00000617617 POLR3GLQ9BT43 218 aa16.09■□□□□ 0.17
PDPN-211ENST00000617617 PLEKHG3A1L390 1219 aa16.09■□□□□ 0.17
PDPN-211ENST00000617617 A0A1W2PP64 1363 aa16.08■□□□□ 0.17
PDPN-211ENST00000617617 CCDC61Q9Y6R9 512 aa16.08■□□□□ 0.16
PDPN-211ENST00000617617 POLR3AO14802 1390 aaPredicted RBP16.08■□□□□ 0.16
PDPN-211ENST00000617617 PRR36Q9H6K5 1346 aa16.08■□□□□ 0.16
PDPN-211ENST00000617617 NUDT16Q96DE0 195 aaKnown RBP16.08■□□□□ 0.16
PDPN-211ENST00000617617 CARD14Q9BXL6 1004 aa16.08■□□□□ 0.16
PDPN-211ENST00000617617 LRRC7Q96NW7 1537 aa16.07■□□□□ 0.16
PDPN-211ENST00000617617 SLC12A5Q9H2X9 1139 aa16.07■□□□□ 0.16
PDPN-211ENST00000617617 TERF2IPQ9NYB0 399 aa16.07■□□□□ 0.16
PDPN-211ENST00000617617 BRD4O60885 1362 aaPredicted RBP16.07■□□□□ 0.16
PDPN-211ENST00000617617 EDC4Q6P2E9 1401 aaKnown RBP16.07■□□□□ 0.16
PDPN-211ENST00000617617 NSD3Q9BZ95 1437 aa16.07■□□□□ 0.16
PDPN-211ENST00000617617 KNSTRNQ9Y448 316 aa16.06■□□□□ 0.16
PDPN-211ENST00000617617 SSH2Q76I76 1423 aa16.04■□□□□ 0.16
PDPN-211ENST00000617617 CGNL1Q0VF96 1302 aa16.03■□□□□ 0.16
PDPN-211ENST00000617617 HDGFL2Q7Z4V5 671 aaPredicted RBP16.03■□□□□ 0.16
PDPN-211ENST00000617617 ZNF692Q9BU19 519 aaPredicted RBP16.03■□□□□ 0.16
PDPN-211ENST00000617617 MARF1Q9Y4F3 1742 aaKnown RBP16.03■□□□□ 0.16
PDPN-211ENST00000617617 LTBP4Q8N2S1 1624 aa16.03■□□□□ 0.16
PDPN-211ENST00000617617 MYBBP1AQ9BQG0 1328 aaKnown RBP16.03■□□□□ 0.16
PDPN-211ENST00000617617 TMC1Q8TDI8 760 aa16.02■□□□□ 0.16
PDPN-211ENST00000617617 CABP1Q9NZU7 370 aa16.02■□□□□ 0.16
PDPN-211ENST00000617617 TRPM3Q9HCF6 1732 aaPredicted RBP16.02■□□□□ 0.15
PDPN-211ENST00000617617 TMEM94Q12767 1356 aa16.01■□□□□ 0.15
PDPN-211ENST00000617617 PROSER2Q86WR7 435 aaPredicted RBP16.01■□□□□ 0.15
PDPN-211ENST00000617617 C19orf44Q9H6X5 657 aa16.01■□□□□ 0.15
PDPN-211ENST00000617617 USP6P35125 1406 aa16.01■□□□□ 0.15
PDPN-211ENST00000617617 MST1RQ04912 1400 aa16■□□□□ 0.15
PDPN-211ENST00000617617 PIK3C2AO00443 1686 aa15.99■□□□□ 0.15
PDPN-211ENST00000617617 C1orf167Q5SNV9 1468 aa15.98■□□□□ 0.15
PDPN-211ENST00000617617 INSRP06213 1382 aa15.98■□□□□ 0.15
PDPN-211ENST00000617617 SCAF1Q9H7N4 1312 aaKnown RBP15.97■□□□□ 0.15
PDPN-211ENST00000617617 MAP2P11137 1827 aaKnown RBP15.96■□□□□ 0.15
PDPN-211ENST00000617617 MSH6P52701 1360 aa15.96■□□□□ 0.15
PDPN-211ENST00000617617 TTC21AQ8NDW8 1320 aa15.96■□□□□ 0.14
PDPN-211ENST00000617617 NLRP13Q86W25 1043 aa15.95■□□□□ 0.14
PDPN-211ENST00000617617 ALS2Q96Q42 1657 aa15.95■□□□□ 0.14
PDPN-211ENST00000617617 ACEP12821 1306 aa15.95■□□□□ 0.14
PDPN-211ENST00000617617 USP31Q70CQ4 1352 aa15.95■□□□□ 0.14
PDPN-211ENST00000617617 ZNF335Q9H4Z2 1342 aaPredicted RBP15.95■□□□□ 0.14
PDPN-211ENST00000617617 SMG6Q86US8 1419 aaKnown RBP15.94■□□□□ 0.14
PDPN-211ENST00000617617 SHPRHQ149N8 1683 aa15.94■□□□□ 0.14
PDPN-211ENST00000617617 NHSL1Q5SYE7 1610 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms