RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 TRAK1Q9UPV9 953 aa24.27■■□□□ 1.48
TRIM28-215ENST00000601150 ARHGEF28Q8N1W1 1705 aaKnown RBP24.27■■□□□ 1.48
TRIM28-215ENST00000601150 AHDC1Q5TGY3 1603 aaPredicted RBP24.26■■□□□ 1.47
TRIM28-215ENST00000601150 BRINP3Q76B58 766 aa24.26■■□□□ 1.47
TRIM28-215ENST00000601150 PRAM1Q96QH2 718 aa24.26■■□□□ 1.47
TRIM28-215ENST00000601150 C1orf167Q5SNV9 1468 aa24.26■■□□□ 1.47
TRIM28-215ENST00000601150 FMN2Q9NZ56 1722 aa24.25■■□□□ 1.47
TRIM28-215ENST00000601150 POGKQ9P215 609 aa24.25■■□□□ 1.47
TRIM28-215ENST00000601150 TRPM1Q7Z4N2 1603 aa24.24■■□□□ 1.47
TRIM28-215ENST00000601150 COL16A1Q07092 1604 aaPredicted RBP24.23■■□□□ 1.47
TRIM28-215ENST00000601150 NHSL1Q5SYE7 1610 aa24.23■■□□□ 1.47
TRIM28-215ENST00000601150 TONSLQ96HA7 1378 aa24.22■■□□□ 1.47
TRIM28-215ENST00000601150 SAFB2Q14151 953 aaKnown RBP eCLIP24.21■■□□□ 1.47
TRIM28-215ENST00000601150 ADGRB2O60241 1585 aa24.2■■□□□ 1.47
TRIM28-215ENST00000601150 NBPF1Q3BBV0 1214 aa24.2■■□□□ 1.46
TRIM28-215ENST00000601150 RGPD8O14715 1765 aaPredicted RBP24.16■■□□□ 1.46
TRIM28-215ENST00000601150 ORAI2Q96SN7 254 aa24.16■■□□□ 1.46
TRIM28-215ENST00000601150 MED1Q15648 1581 aaPredicted RBP24.16■■□□□ 1.46
TRIM28-215ENST00000601150 MINK1Q8N4C8 1332 aaPredicted RBP24.13■■□□□ 1.45
TRIM28-215ENST00000601150 CLSPNQ9HAW4 1339 aa24.13■■□□□ 1.45
TRIM28-215ENST00000601150 NUTM2FA1L443 756 aa24.13■■□□□ 1.45
TRIM28-215ENST00000601150 ESCO1Q5FWF5 840 aa24.13■■□□□ 1.45
TRIM28-215ENST00000601150 KIF1AQ12756 1690 aa24.12■■□□□ 1.45
TRIM28-215ENST00000601150 SHPRHQ149N8 1683 aa24.12■■□□□ 1.45
TRIM28-215ENST00000601150 JCADQ9P266 1359 aa24.12■■□□□ 1.45
TRIM28-215ENST00000601150 NBPF8Q3BBV2 869 aa24.11■■□□□ 1.45
TRIM28-215ENST00000601150 ROCK2O75116 1388 aaKnown RBP24.11■■□□□ 1.45
TRIM28-215ENST00000601150 DDX17Q92841 729 aaKnown RBP24.1■■□□□ 1.45
TRIM28-215ENST00000601150 HIRIP3Q9BW71 556 aaPredicted RBP24.1■■□□□ 1.45
TRIM28-215ENST00000601150 USP32Q8NFA0 1604 aa24.1■■□□□ 1.45
TRIM28-215ENST00000601150 DISP3Q9P2K9 1392 aa24.09■■□□□ 1.45
TRIM28-215ENST00000601150 ANKARQ7Z5J8 1434 aa24.09■■□□□ 1.45
TRIM28-215ENST00000601150 QRICH2Q9H0J4 1663 aa24.08■■□□□ 1.45
TRIM28-215ENST00000601150 EIF3AQ14152 1382 aaKnown RBP24.08■■□□□ 1.45
TRIM28-215ENST00000601150 RALGAPBQ86X10 1494 aa24.07■■□□□ 1.44
TRIM28-215ENST00000601150 TULP4Q9NRJ4 1543 aa24.06■■□□□ 1.44
TRIM28-215ENST00000601150 WASLO00401 505 aaPredicted RBP24.06■■□□□ 1.44
TRIM28-215ENST00000601150 NPHP3Q7Z494 1330 aa24.06■■□□□ 1.44
TRIM28-215ENST00000601150 GPRASP1Q5JY77 1395 aa24.05■■□□□ 1.44
TRIM28-215ENST00000601150 LRRC59Q96AG4 307 aaKnown RBP24.05■■□□□ 1.44
TRIM28-215ENST00000601150 CENPJQ9HC77 1338 aaPredicted RBP24.05■■□□□ 1.44
TRIM28-215ENST00000601150 CCER1Q8TC90 406 aaPredicted RBP24.04■■□□□ 1.44
TRIM28-215ENST00000601150 SOS2Q07890 1332 aaPredicted RBP24.04■■□□□ 1.44
TRIM28-215ENST00000601150 ITSN1Q15811 1721 aa24.04■■□□□ 1.44
TRIM28-215ENST00000601150 PXDNQ92626 1479 aa24.02■■□□□ 1.44
TRIM28-215ENST00000601150 FOXO3O43524 673 aa24.02■■□□□ 1.44
TRIM28-215ENST00000601150 SPATA31A6Q5VVP1 1343 aa24.02■■□□□ 1.44
TRIM28-215ENST00000601150 PHF8Q9UPP1 1060 aa24.01■■□□□ 1.43
TRIM28-215ENST00000601150 TIMELESSQ9UNS1 1208 aa24■■□□□ 1.43
TRIM28-215ENST00000601150 CARD11Q9BXL7 1154 aa23.99■■□□□ 1.43
TRIM28-215ENST00000601150 PRR36Q9H6K5 1346 aa23.99■■□□□ 1.43
TRIM28-215ENST00000601150 CDK19Q9BWU1 502 aa23.98■■□□□ 1.43
TRIM28-215ENST00000601150 PNPLA6Q8IY17 1366 aa23.98■■□□□ 1.43
TRIM28-215ENST00000601150 ATP7BP35670 1465 aa23.97■■□□□ 1.43
TRIM28-215ENST00000601150 TOPAZ1Q8N9V7 1692 aa23.96■■□□□ 1.43
TRIM28-215ENST00000601150 XPCQ01831 940 aaPredicted RBP23.96■■□□□ 1.43
TRIM28-215ENST00000601150 PHF23Q9BUL5 403 aaPredicted RBP23.96■■□□□ 1.43
TRIM28-215ENST00000601150 NUDT16Q96DE0 195 aaKnown RBP23.95■■□□□ 1.42
TRIM28-215ENST00000601150 LRP6O75581 1613 aa23.95■■□□□ 1.42
TRIM28-215ENST00000601150 COL22A1Q8NFW1 1626 aaPredicted RBP23.95■■□□□ 1.42
TRIM28-215ENST00000601150 PMFBP1Q8TBY8 1022 aa23.94■■□□□ 1.42
TRIM28-215ENST00000601150 KRT28Q7Z3Y7 464 aa23.93■■□□□ 1.42
TRIM28-215ENST00000601150 NUTM2BA6NNL0 878 aaPredicted RBP23.91■■□□□ 1.42
TRIM28-215ENST00000601150 NUTM2EB1AL46 878 aaPredicted RBP23.91■■□□□ 1.42
TRIM28-215ENST00000601150 PSME1Q06323 249 aa23.91■■□□□ 1.42
TRIM28-215ENST00000601150 NUTM2AQ8IVF1 878 aaPredicted RBP23.91■■□□□ 1.42
TRIM28-215ENST00000601150 SRPK2P78362 688 aaKnown RBP23.9■■□□□ 1.42
TRIM28-215ENST00000601150 EVC2Q86UK5 1308 aa23.89■■□□□ 1.42
TRIM28-215ENST00000601150 MEX3CQ5U5Q3 659 aaKnown RBP23.89■■□□□ 1.41
TRIM28-215ENST00000601150 CCDC61Q9Y6R9 512 aa23.89■■□□□ 1.41
TRIM28-215ENST00000601150 TRPM3Q9HCF6 1732 aaPredicted RBP23.89■■□□□ 1.41
TRIM28-215ENST00000601150 SPATA31A3Q5VYP0 1347 aa23.88■■□□□ 1.41
TRIM28-215ENST00000601150 SBNO1A3KN83 1393 aa23.88■■□□□ 1.41
TRIM28-215ENST00000601150 NGDNQ8NEJ9 315 aaKnown RBP23.87■■□□□ 1.41
TRIM28-215ENST00000601150 CABP2Q9NPB3 220 aa23.87■■□□□ 1.41
TRIM28-215ENST00000601150 SBNO2Q9Y2G9 1366 aa23.87■■□□□ 1.41
TRIM28-215ENST00000601150 TNS3Q68CZ2 1445 aa23.86■■□□□ 1.41
TRIM28-215ENST00000601150 PPIP5K1Q6PFW1 1433 aa23.84■■□□□ 1.41
TRIM28-215ENST00000601150 ALS2Q96Q42 1657 aa23.83■■□□□ 1.41
TRIM28-215ENST00000601150 POLR3AO14802 1390 aaPredicted RBP23.83■■□□□ 1.41
TRIM28-215ENST00000601150 PLEKHG3A1L390 1219 aa23.83■■□□□ 1.41
TRIM28-215ENST00000601150 MARF1Q9Y4F3 1742 aaKnown RBP23.83■■□□□ 1.41
TRIM28-215ENST00000601150 RGS17Q9UGC6 210 aaPredicted RBP23.82■■□□□ 1.4
TRIM28-215ENST00000601150 ARHGEF10O15013 1369 aa23.81■■□□□ 1.4
TRIM28-215ENST00000601150 ACEP12821 1306 aa23.81■■□□□ 1.4
TRIM28-215ENST00000601150 ILDR2Q71H61 639 aa23.8■■□□□ 1.4
TRIM28-215ENST00000601150 ABCA3Q99758 1704 aa23.79■■□□□ 1.4
TRIM28-215ENST00000601150 LMOD2Q6P5Q4 547 aa23.79■■□□□ 1.4
TRIM28-215ENST00000601150 ADAMTS2O95450 1211 aa23.78■■□□□ 1.4
TRIM28-215ENST00000601150 USP47Q96K76 1375 aa23.78■■□□□ 1.4
TRIM28-215ENST00000601150 ST20-MTHFSA0A0A6YYL1 179 aa23.77■■□□□ 1.4
TRIM28-215ENST00000601150 ATAD2Q6PL18 1390 aa23.77■■□□□ 1.4
TRIM28-215ENST00000601150 PAK3O75914 559 aaPredicted RBP23.76■■□□□ 1.39
TRIM28-215ENST00000601150 C8orf37Q96NL8 207 aa23.76■■□□□ 1.39
TRIM28-215ENST00000601150 CABP1Q9NZU7 370 aa23.76■■□□□ 1.39
TRIM28-215ENST00000601150 AKAP12Q02952 1782 aa23.74■■□□□ 1.39
TRIM28-215ENST00000601150 SLC24A1O60721 1099 aa23.74■■□□□ 1.39
TRIM28-215ENST00000601150 ZNF772Q68DY9 489 aaPredicted RBP23.73■■□□□ 1.39
TRIM28-215ENST00000601150 TESK2Q96S53 571 aa23.73■■□□□ 1.39
TRIM28-215ENST00000601150 AFF2P51816 1311 aa23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms