RNA–Protein interactions for RNA: ENST00000600791.5

SHKBP1-226, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 494 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-226ENST00000600791 PNPLA6Q8IY17 1366 aa22.23■■□□□ 1.15
SHKBP1-226ENST00000600791 ABCC11Q96J66 1382 aa22.23■■□□□ 1.15
SHKBP1-226ENST00000600791 NUTM2BA6NNL0 878 aaPredicted RBP22.22■■□□□ 1.15
SHKBP1-226ENST00000600791 NUTM2EB1AL46 878 aaPredicted RBP22.22■■□□□ 1.15
SHKBP1-226ENST00000600791 NUTM2AQ8IVF1 878 aaPredicted RBP22.22■■□□□ 1.15
SHKBP1-226ENST00000600791 YTHDC2Q9H6S0 1430 aaKnown RBP22.22■■□□□ 1.15
SHKBP1-226ENST00000600791 WAPLQ7Z5K2 1190 aa22.2■■□□□ 1.14
SHKBP1-226ENST00000600791 PLEKHH1Q9ULM0 1364 aa22.2■■□□□ 1.14
SHKBP1-226ENST00000600791 ZNF772Q68DY9 489 aaPredicted RBP22.19■■□□□ 1.14
SHKBP1-226ENST00000600791 SOS2Q07890 1332 aaPredicted RBP22.18■■□□□ 1.14
SHKBP1-226ENST00000600791 C14orf93Q9H972 538 aaKnown RBP22.18■■□□□ 1.14
SHKBP1-226ENST00000600791 FMN2Q9NZ56 1722 aa22.15■■□□□ 1.14
SHKBP1-226ENST00000600791 CFAP70Q5T0N1 1121 aa22.15■■□□□ 1.14
SHKBP1-226ENST00000600791 ESCO1Q5FWF5 840 aa22.14■■□□□ 1.13
SHKBP1-226ENST00000600791 AFF2P51816 1311 aa22.13■■□□□ 1.13
SHKBP1-226ENST00000600791 HRCP23327 699 aa22.13■■□□□ 1.13
SHKBP1-226ENST00000600791 PXDNQ92626 1479 aa22.13■■□□□ 1.13
SHKBP1-226ENST00000600791 COL22A1Q8NFW1 1626 aaPredicted RBP22.12■■□□□ 1.13
SHKBP1-226ENST00000600791 DHX57Q6P158 1386 aaKnown RBP22.12■■□□□ 1.13
SHKBP1-226ENST00000600791 NPHP3Q7Z494 1330 aa22.11■■□□□ 1.13
SHKBP1-226ENST00000600791 SIRT1Q96EB6 747 aa22.11■■□□□ 1.13
SHKBP1-226ENST00000600791 NUTM2FA1L443 756 aa22.1■■□□□ 1.13
SHKBP1-226ENST00000600791 ADGRB1O14514 1584 aa22.1■■□□□ 1.13
SHKBP1-226ENST00000600791 C8orf37Q96NL8 207 aa22.1■■□□□ 1.13
SHKBP1-226ENST00000600791 KIF1AQ12756 1690 aa22.08■■□□□ 1.13
SHKBP1-226ENST00000600791 DLC1Q96QB1 1528 aa22.08■■□□□ 1.13
SHKBP1-226ENST00000600791 FOXO3O43524 673 aa22.08■■□□□ 1.13
SHKBP1-226ENST00000600791 ADAMTS2O95450 1211 aa22.07■■□□□ 1.12
SHKBP1-226ENST00000600791 RXRBP28702 533 aa22.06■■□□□ 1.12
SHKBP1-226ENST00000600791 XPCQ01831 940 aaPredicted RBP22.06■■□□□ 1.12
SHKBP1-226ENST00000600791 CDK12Q9NYV4 1490 aaPredicted RBP22.05■■□□□ 1.12
SHKBP1-226ENST00000600791 PRAM1Q96QH2 718 aa22.05■■□□□ 1.12
SHKBP1-226ENST00000600791 RGPD8O14715 1765 aaPredicted RBP22.04■■□□□ 1.12
SHKBP1-226ENST00000600791 DCAF11Q8TEB1 546 aa22.04■■□□□ 1.12
SHKBP1-226ENST00000600791 SAFB2Q14151 953 aaKnown RBP eCLIP22.03■■□□□ 1.12
SHKBP1-226ENST00000600791 KDM2AQ9Y2K7 1162 aa22.03■■□□□ 1.12
SHKBP1-226ENST00000600791 ADGRB2O60241 1585 aa22.03■■□□□ 1.12
SHKBP1-226ENST00000600791 NGLY1Q96IV0 654 aa22.02■■□□□ 1.12
SHKBP1-226ENST00000600791 MARF1Q9Y4F3 1742 aaKnown RBP22■■□□□ 1.11
SHKBP1-226ENST00000600791 USP32Q8NFA0 1604 aa21.99■■□□□ 1.11
SHKBP1-226ENST00000600791 STAC3Q96MF2 364 aa21.99■■□□□ 1.11
SHKBP1-226ENST00000600791 QTRT2Q9H974 415 aaKnown RBP21.99■■□□□ 1.11
SHKBP1-226ENST00000600791 POGKQ9P215 609 aa21.99■■□□□ 1.11
SHKBP1-226ENST00000600791 RGS12O14924 1447 aa21.98■■□□□ 1.11
SHKBP1-226ENST00000600791 TRAK1Q9UPV9 953 aa21.98■■□□□ 1.11
SHKBP1-226ENST00000600791 RBM6P78332 1123 aaKnown RBP21.97■■□□□ 1.11
SHKBP1-226ENST00000600791 PHF8Q9UPP1 1060 aa21.97■■□□□ 1.11
SHKBP1-226ENST00000600791 ANKARQ7Z5J8 1434 aa21.97■■□□□ 1.11
SHKBP1-226ENST00000600791 USP21Q9UK80 565 aa21.96■■□□□ 1.11
SHKBP1-226ENST00000600791 SPATA31A3Q5VYP0 1347 aa21.96■■□□□ 1.11
SHKBP1-226ENST00000600791 FNBP4Q8N3X1 1017 aaPredicted RBP21.95■■□□□ 1.1
SHKBP1-226ENST00000600791 ARHGEF28Q8N1W1 1705 aaKnown RBP21.94■■□□□ 1.1
SHKBP1-226ENST00000600791 KRT28Q7Z3Y7 464 aa21.94■■□□□ 1.1
SHKBP1-226ENST00000600791 TNS3Q68CZ2 1445 aa21.93■■□□□ 1.1
SHKBP1-226ENST00000600791 HIRIP3Q9BW71 556 aaPredicted RBP21.93■■□□□ 1.1
SHKBP1-226ENST00000600791 MINK1Q8N4C8 1332 aaPredicted RBP21.92■■□□□ 1.1
SHKBP1-226ENST00000600791 UPF1Q92900 1129 aaKnown RBP eCLIP21.92■■□□□ 1.1
SHKBP1-226ENST00000600791 TULP4Q9NRJ4 1543 aa21.91■■□□□ 1.1
SHKBP1-226ENST00000600791 ATRNO75882 1429 aa21.91■■□□□ 1.1
SHKBP1-226ENST00000600791 TRPC5Q9UL62 973 aaPredicted RBP21.91■■□□□ 1.1
SHKBP1-226ENST00000600791 BCL9LQ86UU0 1499 aa21.9■■□□□ 1.1
SHKBP1-226ENST00000600791 KIAA1210Q9ULL0 1709 aa21.89■■□□□ 1.1
SHKBP1-226ENST00000600791 SBNO1A3KN83 1393 aa21.89■■□□□ 1.1
SHKBP1-226ENST00000600791 EIF3AQ14152 1382 aaKnown RBP21.89■■□□□ 1.1
SHKBP1-226ENST00000600791 PSME1Q06323 249 aa21.89■■□□□ 1.09
SHKBP1-226ENST00000600791 ABCA3Q99758 1704 aa21.89■■□□□ 1.09
SHKBP1-226ENST00000600791 PRR36Q9H6K5 1346 aa21.88■■□□□ 1.09
SHKBP1-226ENST00000600791 PMFBP1Q8TBY8 1022 aa21.88■■□□□ 1.09
SHKBP1-226ENST00000600791 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.88■■□□□ 1.09
SHKBP1-226ENST00000600791 TRPM3Q9HCF6 1732 aaPredicted RBP21.87■■□□□ 1.09
SHKBP1-226ENST00000600791 WASLO00401 505 aaPredicted RBP21.86■■□□□ 1.09
SHKBP1-226ENST00000600791 ARHGEF10O15013 1369 aa21.85■■□□□ 1.09
SHKBP1-226ENST00000600791 SLIT2O94813 1529 aa21.85■■□□□ 1.09
SHKBP1-226ENST00000600791 CABLES1Q8TDN4 633 aa21.83■■□□□ 1.09
SHKBP1-226ENST00000600791 ITSN1Q15811 1721 aa21.83■■□□□ 1.08
SHKBP1-226ENST00000600791 ATP7BP35670 1465 aa21.83■■□□□ 1.08
SHKBP1-226ENST00000600791 ALS2Q96Q42 1657 aa21.82■■□□□ 1.08
SHKBP1-226ENST00000600791 LMOD2Q6P5Q4 547 aa21.82■■□□□ 1.08
SHKBP1-226ENST00000600791 HAP1P54257 671 aaPredicted RBP21.81■■□□□ 1.08
SHKBP1-226ENST00000600791 PLCH1Q4KWH8 1693 aa21.81■■□□□ 1.08
SHKBP1-226ENST00000600791 EP400Q96L91 3159 aa21.8■■□□□ 1.08
SHKBP1-226ENST00000600791 GPRASP1Q5JY77 1395 aa21.8■■□□□ 1.08
SHKBP1-226ENST00000600791 PLEKHG5O94827 1062 aa21.8■■□□□ 1.08
SHKBP1-226ENST00000600791 GLI3P10071 1580 aa21.79■■□□□ 1.08
SHKBP1-226ENST00000600791 UNC5CLQ8IV45 518 aa21.79■■□□□ 1.08
SHKBP1-226ENST00000600791 GJD4Q96KN9 370 aaPredicted RBP21.79■■□□□ 1.08
SHKBP1-226ENST00000600791 NWD2Q9ULI1 1742 aa21.78■■□□□ 1.08
SHKBP1-226ENST00000600791 ATAD2Q6PL18 1390 aa21.78■■□□□ 1.08
SHKBP1-226ENST00000600791 NBPF1Q3BBV0 1214 aa21.78■■□□□ 1.08
SHKBP1-226ENST00000600791 TOPAZ1Q8N9V7 1692 aa21.77■■□□□ 1.08
SHKBP1-226ENST00000600791 RALGAPBQ86X10 1494 aa21.77■■□□□ 1.07
SHKBP1-226ENST00000600791 NGDNQ8NEJ9 315 aaKnown RBP21.76■■□□□ 1.07
SHKBP1-226ENST00000600791 NUDT16Q96DE0 195 aaKnown RBP21.76■■□□□ 1.07
SHKBP1-226ENST00000600791 CRYBG1Q9Y4K1 1723 aa21.75■■□□□ 1.07
SHKBP1-226ENST00000600791 CDK19Q9BWU1 502 aa21.74■■□□□ 1.07
SHKBP1-226ENST00000600791 L3MBTL2Q969R5 705 aa21.72■■□□□ 1.07
SHKBP1-226ENST00000600791 NRAPQ86VF7 1730 aa21.72■■□□□ 1.07
SHKBP1-226ENST00000600791 SIN3AQ96ST3 1273 aa21.71■■□□□ 1.07
SHKBP1-226ENST00000600791 QRICH2Q9H0J4 1663 aa21.7■■□□□ 1.06
SHKBP1-226ENST00000600791 FAM83GA6ND36 823 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms