RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 TONSLQ96HA7 1378 aa21.88■■□□□ 1.09
LIG1-219ENST00000600055 POGKQ9P215 609 aa21.88■■□□□ 1.09
LIG1-219ENST00000600055 DLC1Q96QB1 1528 aa21.88■■□□□ 1.09
LIG1-219ENST00000600055 BRINP3Q76B58 766 aa21.87■■□□□ 1.09
LIG1-219ENST00000600055 NBPF8Q3BBV2 869 aa21.86■■□□□ 1.09
LIG1-219ENST00000600055 C1orf167Q5SNV9 1468 aa21.85■■□□□ 1.09
LIG1-219ENST00000600055 KIAA1210Q9ULL0 1709 aa21.85■■□□□ 1.09
LIG1-219ENST00000600055 NUTM2FA1L443 756 aa21.83■■□□□ 1.09
LIG1-219ENST00000600055 CDC42BPGQ6DT37 1551 aa21.82■■□□□ 1.08
LIG1-219ENST00000600055 ORAI2Q96SN7 254 aa21.82■■□□□ 1.08
LIG1-219ENST00000600055 HIRIP3Q9BW71 556 aaPredicted RBP21.81■■□□□ 1.08
LIG1-219ENST00000600055 MINK1Q8N4C8 1332 aaPredicted RBP21.8■■□□□ 1.08
LIG1-219ENST00000600055 DDX17Q92841 729 aaKnown RBP21.8■■□□□ 1.08
LIG1-219ENST00000600055 CCER1Q8TC90 406 aaPredicted RBP21.79■■□□□ 1.08
LIG1-219ENST00000600055 TRPM1Q7Z4N2 1603 aa21.79■■□□□ 1.08
LIG1-219ENST00000600055 CLSPNQ9HAW4 1339 aa21.78■■□□□ 1.08
LIG1-219ENST00000600055 ARHGEF28Q8N1W1 1705 aaKnown RBP21.77■■□□□ 1.08
LIG1-219ENST00000600055 ROCK2O75116 1388 aaKnown RBP21.77■■□□□ 1.08
LIG1-219ENST00000600055 PHLPP1O60346 1717 aa21.77■■□□□ 1.08
LIG1-219ENST00000600055 ESCO1Q5FWF5 840 aa21.76■■□□□ 1.07
LIG1-219ENST00000600055 AHDC1Q5TGY3 1603 aaPredicted RBP21.76■■□□□ 1.07
LIG1-219ENST00000600055 FMN2Q9NZ56 1722 aa21.74■■□□□ 1.07
LIG1-219ENST00000600055 COL16A1Q07092 1604 aaPredicted RBP21.73■■□□□ 1.07
LIG1-219ENST00000600055 ADGRB2O60241 1585 aa21.72■■□□□ 1.07
LIG1-219ENST00000600055 WASLO00401 505 aaPredicted RBP21.71■■□□□ 1.07
LIG1-219ENST00000600055 CENPJQ9HC77 1338 aaPredicted RBP21.71■■□□□ 1.07
LIG1-219ENST00000600055 NHSL1Q5SYE7 1610 aa21.7■■□□□ 1.06
LIG1-219ENST00000600055 GPRASP1Q5JY77 1395 aa21.7■■□□□ 1.06
LIG1-219ENST00000600055 PRR36Q9H6K5 1346 aa21.69■■□□□ 1.06
LIG1-219ENST00000600055 RALGAPBQ86X10 1494 aa21.69■■□□□ 1.06
LIG1-219ENST00000600055 FOXO3O43524 673 aa21.68■■□□□ 1.06
LIG1-219ENST00000600055 CARD11Q9BXL7 1154 aa21.68■■□□□ 1.06
LIG1-219ENST00000600055 JCADQ9P266 1359 aa21.68■■□□□ 1.06
LIG1-219ENST00000600055 XPCQ01831 940 aaPredicted RBP21.67■■□□□ 1.06
LIG1-219ENST00000600055 CDK19Q9BWU1 502 aa21.67■■□□□ 1.06
LIG1-219ENST00000600055 SOS2Q07890 1332 aaPredicted RBP21.66■■□□□ 1.06
LIG1-219ENST00000600055 PHF8Q9UPP1 1060 aa21.66■■□□□ 1.06
LIG1-219ENST00000600055 USP32Q8NFA0 1604 aa21.66■■□□□ 1.06
LIG1-219ENST00000600055 ANKARQ7Z5J8 1434 aa21.65■■□□□ 1.06
LIG1-219ENST00000600055 TIMELESSQ9UNS1 1208 aa21.65■■□□□ 1.06
LIG1-219ENST00000600055 MED1Q15648 1581 aaPredicted RBP21.65■■□□□ 1.06
LIG1-219ENST00000600055 TULP4Q9NRJ4 1543 aa21.65■■□□□ 1.06
LIG1-219ENST00000600055 RGPD8O14715 1765 aaPredicted RBP21.64■■□□□ 1.06
LIG1-219ENST00000600055 NPHP3Q7Z494 1330 aa21.64■■□□□ 1.05
LIG1-219ENST00000600055 PMFBP1Q8TBY8 1022 aa21.64■■□□□ 1.05
LIG1-219ENST00000600055 LRRC59Q96AG4 307 aaKnown RBP21.64■■□□□ 1.05
LIG1-219ENST00000600055 DISP3Q9P2K9 1392 aa21.63■■□□□ 1.05
LIG1-219ENST00000600055 EIF3AQ14152 1382 aaKnown RBP21.62■■□□□ 1.05
LIG1-219ENST00000600055 NUDT16Q96DE0 195 aaKnown RBP21.62■■□□□ 1.05
LIG1-219ENST00000600055 QRICH2Q9H0J4 1663 aa21.61■■□□□ 1.05
LIG1-219ENST00000600055 PXDNQ92626 1479 aa21.61■■□□□ 1.05
LIG1-219ENST00000600055 ATP7BP35670 1465 aa21.59■■□□□ 1.05
LIG1-219ENST00000600055 KRT28Q7Z3Y7 464 aa21.59■■□□□ 1.05
LIG1-219ENST00000600055 CABP2Q9NPB3 220 aa21.59■■□□□ 1.05
LIG1-219ENST00000600055 KIF1AQ12756 1690 aa21.59■■□□□ 1.05
LIG1-219ENST00000600055 PNPLA6Q8IY17 1366 aa21.59■■□□□ 1.05
LIG1-219ENST00000600055 SRPK2P78362 688 aaKnown RBP21.58■■□□□ 1.05
LIG1-219ENST00000600055 SPATA31A6Q5VVP1 1343 aa21.57■■□□□ 1.04
LIG1-219ENST00000600055 SHPRHQ149N8 1683 aa21.57■■□□□ 1.04
LIG1-219ENST00000600055 NUTM2BA6NNL0 878 aaPredicted RBP21.57■■□□□ 1.04
LIG1-219ENST00000600055 NUTM2EB1AL46 878 aaPredicted RBP21.57■■□□□ 1.04
LIG1-219ENST00000600055 NUTM2AQ8IVF1 878 aaPredicted RBP21.57■■□□□ 1.04
LIG1-219ENST00000600055 LRP6O75581 1613 aa21.55■■□□□ 1.04
LIG1-219ENST00000600055 PSME1Q06323 249 aa21.55■■□□□ 1.04
LIG1-219ENST00000600055 EVC2Q86UK5 1308 aa21.55■■□□□ 1.04
LIG1-219ENST00000600055 CCDC61Q9Y6R9 512 aa21.54■■□□□ 1.04
LIG1-219ENST00000600055 NGDNQ8NEJ9 315 aaKnown RBP21.53■■□□□ 1.04
LIG1-219ENST00000600055 PHF23Q9BUL5 403 aaPredicted RBP21.53■■□□□ 1.04
LIG1-219ENST00000600055 SPATA31A3Q5VYP0 1347 aa21.53■■□□□ 1.04
LIG1-219ENST00000600055 ST20-MTHFSA0A0A6YYL1 179 aa21.52■■□□□ 1.04
LIG1-219ENST00000600055 PLEKHG3A1L390 1219 aa21.5■■□□□ 1.03
LIG1-219ENST00000600055 SBNO2Q9Y2G9 1366 aa21.49■■□□□ 1.03
LIG1-219ENST00000600055 MEX3CQ5U5Q3 659 aaKnown RBP21.49■■□□□ 1.03
LIG1-219ENST00000600055 RGS17Q9UGC6 210 aaPredicted RBP21.49■■□□□ 1.03
LIG1-219ENST00000600055 TOPAZ1Q8N9V7 1692 aa21.49■■□□□ 1.03
LIG1-219ENST00000600055 ACEP12821 1306 aa21.49■■□□□ 1.03
LIG1-219ENST00000600055 SBNO1A3KN83 1393 aa21.48■■□□□ 1.03
LIG1-219ENST00000600055 USP47Q96K76 1375 aa21.48■■□□□ 1.03
LIG1-219ENST00000600055 TNS3Q68CZ2 1445 aa21.48■■□□□ 1.03
LIG1-219ENST00000600055 PPIP5K1Q6PFW1 1433 aa21.48■■□□□ 1.03
LIG1-219ENST00000600055 LMOD2Q6P5Q4 547 aa21.48■■□□□ 1.03
LIG1-219ENST00000600055 TESK2Q96S53 571 aa21.48■■□□□ 1.03
LIG1-219ENST00000600055 CABP1Q9NZU7 370 aa21.48■■□□□ 1.03
LIG1-219ENST00000600055 ITSN1Q15811 1721 aa21.48■■□□□ 1.03
LIG1-219ENST00000600055 POLR3AO14802 1390 aaPredicted RBP21.47■■□□□ 1.03
LIG1-219ENST00000600055 PLEKHG5O94827 1062 aa21.46■■□□□ 1.03
LIG1-219ENST00000600055 ADAMTS2O95450 1211 aa21.45■■□□□ 1.02
LIG1-219ENST00000600055 COL22A1Q8NFW1 1626 aaPredicted RBP21.44■■□□□ 1.02
LIG1-219ENST00000600055 PAK3O75914 559 aaPredicted RBP21.44■■□□□ 1.02
LIG1-219ENST00000600055 ILDR2Q71H61 639 aa21.44■■□□□ 1.02
LIG1-219ENST00000600055 TRPM3Q9HCF6 1732 aaPredicted RBP21.43■■□□□ 1.02
LIG1-219ENST00000600055 CABLES1Q8TDN4 633 aa21.42■■□□□ 1.02
LIG1-219ENST00000600055 ARHGEF10O15013 1369 aa21.41■■□□□ 1.02
LIG1-219ENST00000600055 ATAD2Q6PL18 1390 aa21.41■■□□□ 1.02
LIG1-219ENST00000600055 C8orf37Q96NL8 207 aa21.41■■□□□ 1.02
LIG1-219ENST00000600055 POTEAQ6S8J7 498 aa21.39■■□□□ 1.01
LIG1-219ENST00000600055 ALS2Q96Q42 1657 aa21.37■■□□□ 1.01
LIG1-219ENST00000600055 AFF2P51816 1311 aa21.37■■□□□ 1.01
LIG1-219ENST00000600055 NUTM2GQ5VZR2 741 aa21.37■■□□□ 1.01
LIG1-219ENST00000600055 HAP1P54257 671 aaPredicted RBP21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms