RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 PRAG1Q86YV5 1406 aa20.48■□□□□ 0.87
LIG1-218ENST00000599322 SIRT1Q96EB6 747 aa20.47■□□□□ 0.87
LIG1-218ENST00000599322 YTHDC2Q9H6S0 1430 aaKnown RBP20.46■□□□□ 0.87
LIG1-218ENST00000599322 ZNF772Q68DY9 489 aaPredicted RBP20.46■□□□□ 0.87
LIG1-218ENST00000599322 DDX17Q92841 729 aaKnown RBP20.46■□□□□ 0.87
LIG1-218ENST00000599322 POGKQ9P215 609 aa20.46■□□□□ 0.87
LIG1-218ENST00000599322 NUTM2BA6NNL0 878 aaPredicted RBP20.45■□□□□ 0.86
LIG1-218ENST00000599322 NUTM2EB1AL46 878 aaPredicted RBP20.45■□□□□ 0.86
LIG1-218ENST00000599322 WAPLQ7Z5K2 1190 aa20.45■□□□□ 0.86
LIG1-218ENST00000599322 NUTM2AQ8IVF1 878 aaPredicted RBP20.45■□□□□ 0.86
LIG1-218ENST00000599322 C1orf167Q5SNV9 1468 aa20.44■□□□□ 0.86
LIG1-218ENST00000599322 NRXN1Q9ULB1 1477 aa20.44■□□□□ 0.86
LIG1-218ENST00000599322 TECPR2O15040 1411 aa20.44■□□□□ 0.86
LIG1-218ENST00000599322 PNPLA6Q8IY17 1366 aa20.42■□□□□ 0.86
LIG1-218ENST00000599322 LRRC59Q96AG4 307 aaKnown RBP20.41■□□□□ 0.86
LIG1-218ENST00000599322 AFF2P51816 1311 aa20.39■□□□□ 0.85
LIG1-218ENST00000599322 ESCO1Q5FWF5 840 aa20.39■□□□□ 0.85
LIG1-218ENST00000599322 PRAM1Q96QH2 718 aa20.39■□□□□ 0.85
LIG1-218ENST00000599322 TRAK1Q9UPV9 953 aa20.38■□□□□ 0.85
LIG1-218ENST00000599322 CDK12Q9NYV4 1490 aaPredicted RBP20.37■□□□□ 0.85
LIG1-218ENST00000599322 KNDC1Q76NI1 1749 aa20.37■□□□□ 0.85
LIG1-218ENST00000599322 NEUROD1Q13562 356 aa20.37■□□□□ 0.85
LIG1-218ENST00000599322 RXRBP28702 533 aa20.36■□□□□ 0.85
LIG1-218ENST00000599322 SAFB2Q14151 953 aaKnown RBP eCLIP20.36■□□□□ 0.85
LIG1-218ENST00000599322 UPF1Q92900 1129 aaKnown RBP eCLIP20.36■□□□□ 0.85
LIG1-218ENST00000599322 ORAI2Q96SN7 254 aa20.36■□□□□ 0.85
LIG1-218ENST00000599322 CDC42BPGQ6DT37 1551 aa20.35■□□□□ 0.85
LIG1-218ENST00000599322 NUTM2FA1L443 756 aa20.35■□□□□ 0.85
LIG1-218ENST00000599322 COL22A1Q8NFW1 1626 aaPredicted RBP20.35■□□□□ 0.85
LIG1-218ENST00000599322 PLEKHH1Q9ULM0 1364 aa20.34■□□□□ 0.85
LIG1-218ENST00000599322 SOS2Q07890 1332 aaPredicted RBP20.34■□□□□ 0.85
LIG1-218ENST00000599322 MARF1Q9Y4F3 1742 aaKnown RBP20.33■□□□□ 0.85
LIG1-218ENST00000599322 NPHP3Q7Z494 1330 aa20.33■□□□□ 0.85
LIG1-218ENST00000599322 C8orf37Q96NL8 207 aa20.33■□□□□ 0.85
LIG1-218ENST00000599322 DLC1Q96QB1 1528 aa20.32■□□□□ 0.84
LIG1-218ENST00000599322 RGS12O14924 1447 aa20.31■□□□□ 0.84
LIG1-218ENST00000599322 SIN3AQ96ST3 1273 aa20.3■□□□□ 0.84
LIG1-218ENST00000599322 EIF3AQ14152 1382 aaKnown RBP20.29■□□□□ 0.84
LIG1-218ENST00000599322 RGPD8O14715 1765 aaPredicted RBP20.29■□□□□ 0.84
LIG1-218ENST00000599322 FMN2Q9NZ56 1722 aa20.28■□□□□ 0.84
LIG1-218ENST00000599322 FOXO3O43524 673 aa20.28■□□□□ 0.84
LIG1-218ENST00000599322 ADAMTS2O95450 1211 aa20.28■□□□□ 0.84
LIG1-218ENST00000599322 L3MBTL2Q969R5 705 aa20.28■□□□□ 0.84
LIG1-218ENST00000599322 QTRT2Q9H974 415 aaKnown RBP20.28■□□□□ 0.84
LIG1-218ENST00000599322 ADGRB1O14514 1584 aa20.27■□□□□ 0.84
LIG1-218ENST00000599322 PXDNQ92626 1479 aa20.27■□□□□ 0.84
LIG1-218ENST00000599322 MINK1Q8N4C8 1332 aaPredicted RBP20.27■□□□□ 0.83
LIG1-218ENST00000599322 RBM6P78332 1123 aaKnown RBP20.26■□□□□ 0.83
LIG1-218ENST00000599322 PSME1Q06323 249 aa20.26■□□□□ 0.83
LIG1-218ENST00000599322 HIRIP3Q9BW71 556 aaPredicted RBP20.25■□□□□ 0.83
LIG1-218ENST00000599322 PHF8Q9UPP1 1060 aa20.25■□□□□ 0.83
LIG1-218ENST00000599322 NGLY1Q96IV0 654 aa20.24■□□□□ 0.83
LIG1-218ENST00000599322 WASLO00401 505 aaPredicted RBP20.22■□□□□ 0.83
LIG1-218ENST00000599322 KIF1AQ12756 1690 aa20.22■□□□□ 0.83
LIG1-218ENST00000599322 KIAA1210Q9ULL0 1709 aa20.22■□□□□ 0.83
LIG1-218ENST00000599322 TONSLQ96HA7 1378 aa20.21■□□□□ 0.83
LIG1-218ENST00000599322 ANKARQ7Z5J8 1434 aa20.21■□□□□ 0.83
LIG1-218ENST00000599322 KRT28Q7Z3Y7 464 aa20.21■□□□□ 0.83
LIG1-218ENST00000599322 XPCQ01831 940 aaPredicted RBP20.2■□□□□ 0.82
LIG1-218ENST00000599322 NBPF1Q3BBV0 1214 aa20.2■□□□□ 0.82
LIG1-218ENST00000599322 FNBP4Q8N3X1 1017 aaPredicted RBP20.19■□□□□ 0.82
LIG1-218ENST00000599322 USP21Q9UK80 565 aa20.19■□□□□ 0.82
LIG1-218ENST00000599322 ATRNO75882 1429 aa20.19■□□□□ 0.82
LIG1-218ENST00000599322 HAP1P54257 671 aaPredicted RBP20.18■□□□□ 0.82
LIG1-218ENST00000599322 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.18■□□□□ 0.82
LIG1-218ENST00000599322 LMOD2Q6P5Q4 547 aa20.17■□□□□ 0.82
LIG1-218ENST00000599322 NGDNQ8NEJ9 315 aaKnown RBP20.17■□□□□ 0.82
LIG1-218ENST00000599322 PMFBP1Q8TBY8 1022 aa20.17■□□□□ 0.82
LIG1-218ENST00000599322 GPRASP1Q5JY77 1395 aa20.17■□□□□ 0.82
LIG1-218ENST00000599322 CENPJQ9HC77 1338 aaPredicted RBP20.16■□□□□ 0.82
LIG1-218ENST00000599322 ADGRB2O60241 1585 aa20.16■□□□□ 0.82
LIG1-218ENST00000599322 TRPC5Q9UL62 973 aaPredicted RBP20.15■□□□□ 0.82
LIG1-218ENST00000599322 ROCK2O75116 1388 aaKnown RBP20.15■□□□□ 0.82
LIG1-218ENST00000599322 BCL9LQ86UU0 1499 aa20.15■□□□□ 0.82
LIG1-218ENST00000599322 CDK19Q9BWU1 502 aa20.14■□□□□ 0.81
LIG1-218ENST00000599322 SPATA31A3Q5VYP0 1347 aa20.13■□□□□ 0.81
LIG1-218ENST00000599322 NUDT16Q96DE0 195 aaKnown RBP20.13■□□□□ 0.81
LIG1-218ENST00000599322 ABCA3Q99758 1704 aa20.13■□□□□ 0.81
LIG1-218ENST00000599322 SRPK2P78362 688 aaKnown RBP20.12■□□□□ 0.81
LIG1-218ENST00000599322 ARHGEF28Q8N1W1 1705 aaKnown RBP20.12■□□□□ 0.81
LIG1-218ENST00000599322 USP32Q8NFA0 1604 aa20.12■□□□□ 0.81
LIG1-218ENST00000599322 TULP4Q9NRJ4 1543 aa20.12■□□□□ 0.81
LIG1-218ENST00000599322 EP400Q96L91 3159 aa20.11■□□□□ 0.81
LIG1-218ENST00000599322 PCGF6Q9BYE7 350 aa20.1■□□□□ 0.81
LIG1-218ENST00000599322 CCDC61Q9Y6R9 512 aa20.1■□□□□ 0.81
LIG1-218ENST00000599322 BRWD3Q6RI45 1802 aa20.1■□□□□ 0.81
LIG1-218ENST00000599322 SBNO1A3KN83 1393 aa20.09■□□□□ 0.81
LIG1-218ENST00000599322 ARHGEF10O15013 1369 aa20.09■□□□□ 0.81
LIG1-218ENST00000599322 ATAD2Q6PL18 1390 aa20.09■□□□□ 0.81
LIG1-218ENST00000599322 GLI3P10071 1580 aa20.08■□□□□ 0.81
LIG1-218ENST00000599322 PLCH1Q4KWH8 1693 aa20.08■□□□□ 0.81
LIG1-218ENST00000599322 PAK3O75914 559 aaPredicted RBP20.08■□□□□ 0.81
LIG1-218ENST00000599322 TNS3Q68CZ2 1445 aa20.08■□□□□ 0.8
LIG1-218ENST00000599322 SLIT2O94813 1529 aa20.07■□□□□ 0.8
LIG1-218ENST00000599322 PRR36Q9H6K5 1346 aa20.07■□□□□ 0.8
LIG1-218ENST00000599322 CARD11Q9BXL7 1154 aa20.07■□□□□ 0.8
LIG1-218ENST00000599322 EVC2Q86UK5 1308 aa20.06■□□□□ 0.8
LIG1-218ENST00000599322 PLEKHG5O94827 1062 aa20.06■□□□□ 0.8
LIG1-218ENST00000599322 NWD2Q9ULI1 1742 aa20.05■□□□□ 0.8
LIG1-218ENST00000599322 TRPM3Q9HCF6 1732 aaPredicted RBP20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms