RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 LRP6O75581 1613 aa17.87■□□□□ 0.45
LIG1-217ENST00000599165 DDX17Q92841 729 aaKnown RBP17.86■□□□□ 0.45
LIG1-217ENST00000599165 FMN2Q9NZ56 1722 aa17.85■□□□□ 0.45
LIG1-217ENST00000599165 DLC1Q96QB1 1528 aa17.83■□□□□ 0.45
LIG1-217ENST00000599165 ORAI2Q96SN7 254 aa17.83■□□□□ 0.44
LIG1-217ENST00000599165 DCAF11Q8TEB1 546 aa17.82■□□□□ 0.44
LIG1-217ENST00000599165 SIRT1Q96EB6 747 aa17.82■□□□□ 0.44
LIG1-217ENST00000599165 KDM2AQ9Y2K7 1162 aa17.81■□□□□ 0.44
LIG1-217ENST00000599165 RGPD8O14715 1765 aaPredicted RBP17.81■□□□□ 0.44
LIG1-217ENST00000599165 PHF23Q9BUL5 403 aaPredicted RBP17.8■□□□□ 0.44
LIG1-217ENST00000599165 SOCS7O14512 581 aa17.79■□□□□ 0.44
LIG1-217ENST00000599165 SPATA31A6Q5VVP1 1343 aa17.78■□□□□ 0.44
LIG1-217ENST00000599165 ADGRB2O60241 1585 aa17.78■□□□□ 0.44
LIG1-217ENST00000599165 ARHGEF28Q8N1W1 1705 aaKnown RBP17.78■□□□□ 0.44
LIG1-217ENST00000599165 SOS2Q07890 1332 aaPredicted RBP17.77■□□□□ 0.44
LIG1-217ENST00000599165 USP32Q8NFA0 1604 aa17.77■□□□□ 0.44
LIG1-217ENST00000599165 KIAA1210Q9ULL0 1709 aa17.77■□□□□ 0.44
LIG1-217ENST00000599165 PNPLA6Q8IY17 1366 aa17.77■□□□□ 0.43
LIG1-217ENST00000599165 PXDNQ92626 1479 aa17.76■□□□□ 0.43
LIG1-217ENST00000599165 STAC3Q96MF2 364 aa17.76■□□□□ 0.43
LIG1-217ENST00000599165 PRAM1Q96QH2 718 aa17.76■□□□□ 0.43
LIG1-217ENST00000599165 POTEAQ6S8J7 498 aa17.75■□□□□ 0.43
LIG1-217ENST00000599165 NUTM2FA1L443 756 aa17.74■□□□□ 0.43
LIG1-217ENST00000599165 COL22A1Q8NFW1 1626 aaPredicted RBP17.73■□□□□ 0.43
LIG1-217ENST00000599165 LRRC59Q96AG4 307 aaKnown RBP17.73■□□□□ 0.43
LIG1-217ENST00000599165 KIF1AQ12756 1690 aa17.73■□□□□ 0.43
LIG1-217ENST00000599165 SAFB2Q14151 953 aaKnown RBP eCLIP17.72■□□□□ 0.43
LIG1-217ENST00000599165 ESCO1Q5FWF5 840 aa17.72■□□□□ 0.43
LIG1-217ENST00000599165 TRAK1Q9UPV9 953 aa17.72■□□□□ 0.43
LIG1-217ENST00000599165 SIN3AQ96ST3 1273 aa17.71■□□□□ 0.43
LIG1-217ENST00000599165 FOXO3O43524 673 aa17.69■□□□□ 0.42
LIG1-217ENST00000599165 NUTM2BA6NNL0 878 aaPredicted RBP17.68■□□□□ 0.42
LIG1-217ENST00000599165 NUTM2EB1AL46 878 aaPredicted RBP17.68■□□□□ 0.42
LIG1-217ENST00000599165 XPCQ01831 940 aaPredicted RBP17.68■□□□□ 0.42
LIG1-217ENST00000599165 NBPF1Q3BBV0 1214 aa17.68■□□□□ 0.42
LIG1-217ENST00000599165 NUTM2AQ8IVF1 878 aaPredicted RBP17.68■□□□□ 0.42
LIG1-217ENST00000599165 NPHP3Q7Z494 1330 aa17.68■□□□□ 0.42
LIG1-217ENST00000599165 L3MBTL2Q969R5 705 aa17.67■□□□□ 0.42
LIG1-217ENST00000599165 PRR36Q9H6K5 1346 aa17.67■□□□□ 0.42
LIG1-217ENST00000599165 ANKARQ7Z5J8 1434 aa17.66■□□□□ 0.42
LIG1-217ENST00000599165 POGKQ9P215 609 aa17.66■□□□□ 0.42
LIG1-217ENST00000599165 TRPM1Q7Z4N2 1603 aa17.65■□□□□ 0.42
LIG1-217ENST00000599165 HIRIP3Q9BW71 556 aaPredicted RBP17.65■□□□□ 0.42
LIG1-217ENST00000599165 TULP4Q9NRJ4 1543 aa17.65■□□□□ 0.42
LIG1-217ENST00000599165 MINK1Q8N4C8 1332 aaPredicted RBP17.65■□□□□ 0.42
LIG1-217ENST00000599165 MARF1Q9Y4F3 1742 aaKnown RBP17.64■□□□□ 0.41
LIG1-217ENST00000599165 TRIM26Q12899 539 aaPredicted RBP17.63■□□□□ 0.41
LIG1-217ENST00000599165 MEX3CQ5U5Q3 659 aaKnown RBP17.63■□□□□ 0.41
LIG1-217ENST00000599165 TRPM3Q9HCF6 1732 aaPredicted RBP17.63■□□□□ 0.41
LIG1-217ENST00000599165 PHF8Q9UPP1 1060 aa17.62■□□□□ 0.41
LIG1-217ENST00000599165 ATP7BP35670 1465 aa17.62■□□□□ 0.41
LIG1-217ENST00000599165 WASLO00401 505 aaPredicted RBP17.61■□□□□ 0.41
LIG1-217ENST00000599165 AFF2P51816 1311 aa17.61■□□□□ 0.41
LIG1-217ENST00000599165 SPATA31A3Q5VYP0 1347 aa17.61■□□□□ 0.41
LIG1-217ENST00000599165 TOPAZ1Q8N9V7 1692 aa17.61■□□□□ 0.41
LIG1-217ENST00000599165 ABCA3Q99758 1704 aa17.61■□□□□ 0.41
LIG1-217ENST00000599165 NEUROD1Q13562 356 aa17.59■□□□□ 0.41
LIG1-217ENST00000599165 KRT28Q7Z3Y7 464 aa17.59■□□□□ 0.41
LIG1-217ENST00000599165 ALS2Q96Q42 1657 aa17.58■□□□□ 0.41
LIG1-217ENST00000599165 ADAMTS2O95450 1211 aa17.58■□□□□ 0.4
LIG1-217ENST00000599165 ZNF772Q68DY9 489 aaPredicted RBP17.58■□□□□ 0.4
LIG1-217ENST00000599165 ITSN1Q15811 1721 aa17.58■□□□□ 0.4
LIG1-217ENST00000599165 QRICH2Q9H0J4 1663 aa17.58■□□□□ 0.4
LIG1-217ENST00000599165 TNS3Q68CZ2 1445 aa17.57■□□□□ 0.4
LIG1-217ENST00000599165 PMFBP1Q8TBY8 1022 aa17.57■□□□□ 0.4
LIG1-217ENST00000599165 C8orf37Q96NL8 207 aa17.57■□□□□ 0.4
LIG1-217ENST00000599165 NBPF8Q3BBV2 869 aa17.56■□□□□ 0.4
LIG1-217ENST00000599165 CRYBG1Q9Y4K1 1723 aa17.55■□□□□ 0.4
LIG1-217ENST00000599165 SBNO1A3KN83 1393 aa17.55■□□□□ 0.4
LIG1-217ENST00000599165 EIF3AQ14152 1382 aaKnown RBP17.55■□□□□ 0.4
LIG1-217ENST00000599165 FNBP4Q8N3X1 1017 aaPredicted RBP17.53■□□□□ 0.4
LIG1-217ENST00000599165 CDK19Q9BWU1 502 aa17.53■□□□□ 0.4
LIG1-217ENST00000599165 BCL9LQ86UU0 1499 aa17.52■□□□□ 0.4
LIG1-217ENST00000599165 NUDT16Q96DE0 195 aaKnown RBP17.52■□□□□ 0.4
LIG1-217ENST00000599165 GPRASP1Q5JY77 1395 aa17.52■□□□□ 0.39
LIG1-217ENST00000599165 CDK12Q9NYV4 1490 aaPredicted RBP17.51■□□□□ 0.39
LIG1-217ENST00000599165 NGLY1Q96IV0 654 aa17.51■□□□□ 0.39
LIG1-217ENST00000599165 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.51■□□□□ 0.39
LIG1-217ENST00000599165 CENPJQ9HC77 1338 aaPredicted RBP17.5■□□□□ 0.39
LIG1-217ENST00000599165 PSME1Q06323 249 aa17.5■□□□□ 0.39
LIG1-217ENST00000599165 CABLES1Q8TDN4 633 aa17.5■□□□□ 0.39
LIG1-217ENST00000599165 SLIT2O94813 1529 aa17.5■□□□□ 0.39
LIG1-217ENST00000599165 RGS12O14924 1447 aa17.49■□□□□ 0.39
LIG1-217ENST00000599165 ATRNO75882 1429 aa17.49■□□□□ 0.39
LIG1-217ENST00000599165 POLR3AO14802 1390 aaPredicted RBP17.49■□□□□ 0.39
LIG1-217ENST00000599165 PLCH1Q4KWH8 1693 aa17.48■□□□□ 0.39
LIG1-217ENST00000599165 RXRBP28702 533 aa17.48■□□□□ 0.39
LIG1-217ENST00000599165 QTRT2Q9H974 415 aaKnown RBP17.48■□□□□ 0.39
LIG1-217ENST00000599165 ARHGEF10O15013 1369 aa17.48■□□□□ 0.39
LIG1-217ENST00000599165 ROCK2O75116 1388 aaKnown RBP17.48■□□□□ 0.39
LIG1-217ENST00000599165 USP21Q9UK80 565 aa17.47■□□□□ 0.39
LIG1-217ENST00000599165 RALGAPBQ86X10 1494 aa17.47■□□□□ 0.39
LIG1-217ENST00000599165 NWD2Q9ULI1 1742 aa17.45■□□□□ 0.38
LIG1-217ENST00000599165 PLEKHG3A1L390 1219 aa17.45■□□□□ 0.38
LIG1-217ENST00000599165 RBM6P78332 1123 aaKnown RBP17.45■□□□□ 0.38
LIG1-217ENST00000599165 CABP2Q9NPB3 220 aa17.45■□□□□ 0.38
LIG1-217ENST00000599165 CCDC61Q9Y6R9 512 aa17.45■□□□□ 0.38
LIG1-217ENST00000599165 GLI3P10071 1580 aa17.45■□□□□ 0.38
LIG1-217ENST00000599165 PHRF1Q9P1Y6 1649 aaKnown RBP17.44■□□□□ 0.38
LIG1-217ENST00000599165 NGDNQ8NEJ9 315 aaKnown RBP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms