RNA–Protein interactions for RNA: ENST00000599138.5

VRK3-215, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 503 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-215ENST00000599138 DLC1Q96QB1 1528 aa14.11□□□□□ -0.15
VRK3-215ENST00000599138 NHSL1Q5SYE7 1610 aa14.1□□□□□ -0.15
VRK3-215ENST00000599138 JCADQ9P266 1359 aa14.09□□□□□ -0.15
VRK3-215ENST00000599138 KIAA1210Q9ULL0 1709 aa14.08□□□□□ -0.16
VRK3-215ENST00000599138 SIN3AQ96ST3 1273 aa14.08□□□□□ -0.16
VRK3-215ENST00000599138 PRAM1Q96QH2 718 aa14.07□□□□□ -0.16
VRK3-215ENST00000599138 ORAI2Q96SN7 254 aa14.07□□□□□ -0.16
VRK3-215ENST00000599138 L3MBTL2Q969R5 705 aa14.06□□□□□ -0.16
VRK3-215ENST00000599138 SHPRHQ149N8 1683 aa14.05□□□□□ -0.16
VRK3-215ENST00000599138 FMN2Q9NZ56 1722 aa14.05□□□□□ -0.16
VRK3-215ENST00000599138 ILDR2Q71H61 639 aa14.05□□□□□ -0.16
VRK3-215ENST00000599138 TRAK1Q9UPV9 953 aa14.05□□□□□ -0.16
VRK3-215ENST00000599138 DDX17Q92841 729 aaKnown RBP14.04□□□□□ -0.16
VRK3-215ENST00000599138 ADGRB2O60241 1585 aa14.04□□□□□ -0.16
VRK3-215ENST00000599138 POGKQ9P215 609 aa14.03□□□□□ -0.16
VRK3-215ENST00000599138 SOS2Q07890 1332 aaPredicted RBP14.03□□□□□ -0.16
VRK3-215ENST00000599138 SPATA31A6Q5VVP1 1343 aa14.03□□□□□ -0.16
VRK3-215ENST00000599138 ARHGEF28Q8N1W1 1705 aaKnown RBP14.02□□□□□ -0.16
VRK3-215ENST00000599138 NEUROD1Q13562 356 aa14.02□□□□□ -0.17
VRK3-215ENST00000599138 SAFB2Q14151 953 aaKnown RBP eCLIP14.02□□□□□ -0.17
VRK3-215ENST00000599138 NBPF1Q3BBV0 1214 aa14.02□□□□□ -0.17
VRK3-215ENST00000599138 ESCO1Q5FWF5 840 aa14.02□□□□□ -0.17
VRK3-215ENST00000599138 LRRC59Q96AG4 307 aaKnown RBP14.02□□□□□ -0.17
VRK3-215ENST00000599138 RGS17Q9UGC6 210 aaPredicted RBP14.01□□□□□ -0.17
VRK3-215ENST00000599138 PHF23Q9BUL5 403 aaPredicted RBP14□□□□□ -0.17
VRK3-215ENST00000599138 RGPD8O14715 1765 aaPredicted RBP14□□□□□ -0.17
VRK3-215ENST00000599138 LRP6O75581 1613 aa14□□□□□ -0.17
VRK3-215ENST00000599138 PNPLA6Q8IY17 1366 aa13.99□□□□□ -0.17
VRK3-215ENST00000599138 NPHP3Q7Z494 1330 aa13.99□□□□□ -0.17
VRK3-215ENST00000599138 NUTM2FA1L443 756 aa13.99□□□□□ -0.17
VRK3-215ENST00000599138 PXDNQ92626 1479 aa13.99□□□□□ -0.17
VRK3-215ENST00000599138 ANKARQ7Z5J8 1434 aa13.98□□□□□ -0.17
VRK3-215ENST00000599138 KIF1AQ12756 1690 aa13.98□□□□□ -0.17
VRK3-215ENST00000599138 USP32Q8NFA0 1604 aa13.97□□□□□ -0.17
VRK3-215ENST00000599138 MINK1Q8N4C8 1332 aaPredicted RBP13.97□□□□□ -0.17
VRK3-215ENST00000599138 FOXO3O43524 673 aa13.97□□□□□ -0.17
VRK3-215ENST00000599138 HIRIP3Q9BW71 556 aaPredicted RBP13.97□□□□□ -0.17
VRK3-215ENST00000599138 TRPM1Q7Z4N2 1603 aa13.97□□□□□ -0.17
VRK3-215ENST00000599138 WASLO00401 505 aaPredicted RBP13.96□□□□□ -0.17
VRK3-215ENST00000599138 PHF8Q9UPP1 1060 aa13.95□□□□□ -0.18
VRK3-215ENST00000599138 EIF3AQ14152 1382 aaKnown RBP13.95□□□□□ -0.18
VRK3-215ENST00000599138 TULP4Q9NRJ4 1543 aa13.95□□□□□ -0.18
VRK3-215ENST00000599138 PRR36Q9H6K5 1346 aa13.94□□□□□ -0.18
VRK3-215ENST00000599138 COL22A1Q8NFW1 1626 aaPredicted RBP13.94□□□□□ -0.18
VRK3-215ENST00000599138 NBPF8Q3BBV2 869 aa13.94□□□□□ -0.18
VRK3-215ENST00000599138 XPCQ01831 940 aaPredicted RBP13.93□□□□□ -0.18
VRK3-215ENST00000599138 GPRASP1Q5JY77 1395 aa13.93□□□□□ -0.18
VRK3-215ENST00000599138 NUTM2BA6NNL0 878 aaPredicted RBP13.92□□□□□ -0.18
VRK3-215ENST00000599138 NUTM2EB1AL46 878 aaPredicted RBP13.92□□□□□ -0.18
VRK3-215ENST00000599138 POTEAQ6S8J7 498 aa13.92□□□□□ -0.18
VRK3-215ENST00000599138 NUTM2AQ8IVF1 878 aaPredicted RBP13.92□□□□□ -0.18
VRK3-215ENST00000599138 TONSLQ96HA7 1378 aa13.92□□□□□ -0.18
VRK3-215ENST00000599138 SPATA31A3Q5VYP0 1347 aa13.91□□□□□ -0.18
VRK3-215ENST00000599138 CENPJQ9HC77 1338 aaPredicted RBP13.91□□□□□ -0.18
VRK3-215ENST00000599138 SOCS7O14512 581 aa13.91□□□□□ -0.18
VRK3-215ENST00000599138 KRT28Q7Z3Y7 464 aa13.91□□□□□ -0.18
VRK3-215ENST00000599138 ROCK2O75116 1388 aaKnown RBP13.91□□□□□ -0.18
VRK3-215ENST00000599138 ATP7BP35670 1465 aa13.91□□□□□ -0.18
VRK3-215ENST00000599138 MEX3CQ5U5Q3 659 aaKnown RBP13.9□□□□□ -0.18
VRK3-215ENST00000599138 CDK19Q9BWU1 502 aa13.9□□□□□ -0.18
VRK3-215ENST00000599138 PCGF6Q9BYE7 350 aa13.9□□□□□ -0.18
VRK3-215ENST00000599138 SBNO1A3KN83 1393 aa13.9□□□□□ -0.18
VRK3-215ENST00000599138 PMFBP1Q8TBY8 1022 aa13.89□□□□□ -0.19
VRK3-215ENST00000599138 NUDT16Q96DE0 195 aaKnown RBP13.89□□□□□ -0.19
VRK3-215ENST00000599138 ITSN1Q15811 1721 aa13.88□□□□□ -0.19
VRK3-215ENST00000599138 PSME1Q06323 249 aa13.88□□□□□ -0.19
VRK3-215ENST00000599138 TNS3Q68CZ2 1445 aa13.88□□□□□ -0.19
VRK3-215ENST00000599138 QRICH2Q9H0J4 1663 aa13.88□□□□□ -0.19
VRK3-215ENST00000599138 RALGAPBQ86X10 1494 aa13.87□□□□□ -0.19
VRK3-215ENST00000599138 ZNF772Q68DY9 489 aaPredicted RBP13.87□□□□□ -0.19
VRK3-215ENST00000599138 TOPAZ1Q8N9V7 1692 aa13.87□□□□□ -0.19
VRK3-215ENST00000599138 CLSPNQ9HAW4 1339 aa13.87□□□□□ -0.19
VRK3-215ENST00000599138 TRPM3Q9HCF6 1732 aaPredicted RBP13.87□□□□□ -0.19
VRK3-215ENST00000599138 CCDC61Q9Y6R9 512 aa13.86□□□□□ -0.19
VRK3-215ENST00000599138 AFF2P51816 1311 aa13.86□□□□□ -0.19
VRK3-215ENST00000599138 PLEKHG3A1L390 1219 aa13.85□□□□□ -0.19
VRK3-215ENST00000599138 ADAMTS2O95450 1211 aa13.85□□□□□ -0.19
VRK3-215ENST00000599138 POLR3AO14802 1390 aaPredicted RBP13.84□□□□□ -0.19
VRK3-215ENST00000599138 ARHGEF10O15013 1369 aa13.84□□□□□ -0.19
VRK3-215ENST00000599138 NGDNQ8NEJ9 315 aaKnown RBP13.84□□□□□ -0.19
VRK3-215ENST00000599138 C8orf37Q96NL8 207 aa13.84□□□□□ -0.19
VRK3-215ENST00000599138 ALS2Q96Q42 1657 aa13.84□□□□□ -0.19
VRK3-215ENST00000599138 MARF1Q9Y4F3 1742 aaKnown RBP13.84□□□□□ -0.19
VRK3-215ENST00000599138 FNBP4Q8N3X1 1017 aaPredicted RBP13.83□□□□□ -0.2
VRK3-215ENST00000599138 CARD11Q9BXL7 1154 aa13.83□□□□□ -0.2
VRK3-215ENST00000599138 SBNO2Q9Y2G9 1366 aa13.83□□□□□ -0.2
VRK3-215ENST00000599138 SRPK2P78362 688 aaKnown RBP13.82□□□□□ -0.2
VRK3-215ENST00000599138 NGLY1Q96IV0 654 aa13.82□□□□□ -0.2
VRK3-215ENST00000599138 CABP2Q9NPB3 220 aa13.82□□□□□ -0.2
VRK3-215ENST00000599138 TIMELESSQ9UNS1 1208 aa13.82□□□□□ -0.2
VRK3-215ENST00000599138 ACEP12821 1306 aa13.81□□□□□ -0.2
VRK3-215ENST00000599138 EVC2Q86UK5 1308 aa13.81□□□□□ -0.2
VRK3-215ENST00000599138 ABCA3Q99758 1704 aa13.81□□□□□ -0.2
VRK3-215ENST00000599138 PPIP5K1Q6PFW1 1433 aa13.8□□□□□ -0.2
VRK3-215ENST00000599138 CABLES1Q8TDN4 633 aa13.79□□□□□ -0.2
VRK3-215ENST00000599138 BCL9LQ86UU0 1499 aa13.79□□□□□ -0.2
VRK3-215ENST00000599138 RXRBP28702 533 aa13.78□□□□□ -0.2
VRK3-215ENST00000599138 LMOD2Q6P5Q4 547 aa13.78□□□□□ -0.2
VRK3-215ENST00000599138 QTRT2Q9H974 415 aaKnown RBP13.78□□□□□ -0.2
VRK3-215ENST00000599138 USP21Q9UK80 565 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms