RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 BRINP3Q76B58 766 aa26.17■■□□□ 1.78
LIG1-216ENST00000598938 AMOTL2Q9Y2J4 779 aa26.17■■□□□ 1.78
LIG1-216ENST00000598938 UPF1Q92900 1129 aaKnown RBP eCLIP26.16■■□□□ 1.78
LIG1-216ENST00000598938 KIAA1210Q9ULL0 1709 aa26.14■■□□□ 1.77
LIG1-216ENST00000598938 MST1RQ04912 1400 aa26.13■■□□□ 1.77
LIG1-216ENST00000598938 ADGRB1O14514 1584 aa26.12■■□□□ 1.77
LIG1-216ENST00000598938 RXRBP28702 533 aa26.12■■□□□ 1.77
LIG1-216ENST00000598938 TIMELESSQ9UNS1 1208 aa26.12■■□□□ 1.77
LIG1-216ENST00000598938 LRPPRCP42704 1394 aaKnown RBP26.1■■□□□ 1.77
LIG1-216ENST00000598938 TMEM132EQ6IEE7 984 aa26.1■■□□□ 1.77
LIG1-216ENST00000598938 YTHDC2Q9H6S0 1430 aaKnown RBP26.09■■□□□ 1.77
LIG1-216ENST00000598938 TECPR2O15040 1411 aa26.08■■□□□ 1.77
LIG1-216ENST00000598938 PTCH1Q13635 1447 aa26.08■■□□□ 1.77
LIG1-216ENST00000598938 KNDC1Q76NI1 1749 aa26.07■■□□□ 1.76
LIG1-216ENST00000598938 ABCC11Q96J66 1382 aa26.07■■□□□ 1.76
LIG1-216ENST00000598938 TRPM1Q7Z4N2 1603 aa26.06■■□□□ 1.76
LIG1-216ENST00000598938 ADGRL3Q9HAR2 1447 aa26.06■■□□□ 1.76
LIG1-216ENST00000598938 NALCNQ8IZF0 1738 aa26.06■■□□□ 1.76
LIG1-216ENST00000598938 NBPF8Q3BBV2 869 aa26.05■■□□□ 1.76
LIG1-216ENST00000598938 LRRC59Q96AG4 307 aaKnown RBP26.05■■□□□ 1.76
LIG1-216ENST00000598938 AFF2P51816 1311 aa26.04■■□□□ 1.76
LIG1-216ENST00000598938 ROBO2Q9HCK4 1378 aa26.04■■□□□ 1.76
LIG1-216ENST00000598938 NUTM2BA6NNL0 878 aaPredicted RBP26.02■■□□□ 1.76
LIG1-216ENST00000598938 NUTM2EB1AL46 878 aaPredicted RBP26.02■■□□□ 1.76
LIG1-216ENST00000598938 NUTM2AQ8IVF1 878 aaPredicted RBP26.02■■□□□ 1.76
LIG1-216ENST00000598938 STK26Q9P289 416 aa26.02■■□□□ 1.76
LIG1-216ENST00000598938 NBPF1Q3BBV0 1214 aa26.01■■□□□ 1.75
LIG1-216ENST00000598938 DLC1Q96QB1 1528 aa26■■□□□ 1.75
LIG1-216ENST00000598938 PNPLA6Q8IY17 1366 aa26■■□□□ 1.75
LIG1-216ENST00000598938 RALGAPBQ86X10 1494 aa25.98■■□□□ 1.75
LIG1-216ENST00000598938 SIRT1Q96EB6 747 aa25.98■■□□□ 1.75
LIG1-216ENST00000598938 RGS12O14924 1447 aa25.97■■□□□ 1.75
LIG1-216ENST00000598938 GPRASP1Q5JY77 1395 aa25.95■■□□□ 1.75
LIG1-216ENST00000598938 RBM6P78332 1123 aaKnown RBP25.95■■□□□ 1.74
LIG1-216ENST00000598938 ROCK2O75116 1388 aaKnown RBP25.95■■□□□ 1.74
LIG1-216ENST00000598938 TRAK1Q9UPV9 953 aa25.94■■□□□ 1.74
LIG1-216ENST00000598938 PLEKHH1Q9ULM0 1364 aa25.93■■□□□ 1.74
LIG1-216ENST00000598938 C1orf167Q5SNV9 1468 aa25.92■■□□□ 1.74
LIG1-216ENST00000598938 ARHGEF28Q8N1W1 1705 aaKnown RBP25.92■■□□□ 1.74
LIG1-216ENST00000598938 WAPLQ7Z5K2 1190 aa25.92■■□□□ 1.74
LIG1-216ENST00000598938 C8orf37Q96NL8 207 aa25.91■■□□□ 1.74
LIG1-216ENST00000598938 PRAM1Q96QH2 718 aa25.9■■□□□ 1.74
LIG1-216ENST00000598938 QTRT2Q9H974 415 aaKnown RBP25.9■■□□□ 1.74
LIG1-216ENST00000598938 COL22A1Q8NFW1 1626 aaPredicted RBP25.88■■□□□ 1.73
LIG1-216ENST00000598938 NGLY1Q96IV0 654 aa25.87■■□□□ 1.73
LIG1-216ENST00000598938 POGKQ9P215 609 aa25.86■■□□□ 1.73
LIG1-216ENST00000598938 SOS2Q07890 1332 aaPredicted RBP25.86■■□□□ 1.73
LIG1-216ENST00000598938 DDX17Q92841 729 aaKnown RBP25.85■■□□□ 1.73
LIG1-216ENST00000598938 CARD11Q9BXL7 1154 aa25.84■■□□□ 1.73
LIG1-216ENST00000598938 ATAD2Q6PL18 1390 aa25.83■■□□□ 1.73
LIG1-216ENST00000598938 CDC42BPGQ6DT37 1551 aa25.83■■□□□ 1.73
LIG1-216ENST00000598938 SAFB2Q14151 953 aaKnown RBP eCLIP25.81■■□□□ 1.72
LIG1-216ENST00000598938 ADGRB2O60241 1585 aa25.81■■□□□ 1.72
LIG1-216ENST00000598938 MARF1Q9Y4F3 1742 aaKnown RBP25.8■■□□□ 1.72
LIG1-216ENST00000598938 EIF3AQ14152 1382 aaKnown RBP25.79■■□□□ 1.72
LIG1-216ENST00000598938 ADAMTS2O95450 1211 aa25.78■■□□□ 1.72
LIG1-216ENST00000598938 TRPC5Q9UL62 973 aaPredicted RBP25.78■■□□□ 1.72
LIG1-216ENST00000598938 CENPJQ9HC77 1338 aaPredicted RBP25.78■■□□□ 1.72
LIG1-216ENST00000598938 FNBP4Q8N3X1 1017 aaPredicted RBP25.77■■□□□ 1.72
LIG1-216ENST00000598938 USP21Q9UK80 565 aa25.76■■□□□ 1.71
LIG1-216ENST00000598938 ATRNO75882 1429 aa25.76■■□□□ 1.71
LIG1-216ENST00000598938 QRICH2Q9H0J4 1663 aa25.75■■□□□ 1.71
LIG1-216ENST00000598938 MINK1Q8N4C8 1332 aaPredicted RBP25.75■■□□□ 1.71
LIG1-216ENST00000598938 ORAI2Q96SN7 254 aa25.75■■□□□ 1.71
LIG1-216ENST00000598938 FMN2Q9NZ56 1722 aa25.74■■□□□ 1.71
LIG1-216ENST00000598938 NPHP3Q7Z494 1330 aa25.72■■□□□ 1.71
LIG1-216ENST00000598938 HIRIP3Q9BW71 556 aaPredicted RBP25.72■■□□□ 1.71
LIG1-216ENST00000598938 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.71■■□□□ 1.71
LIG1-216ENST00000598938 PXDNQ92626 1479 aa25.71■■□□□ 1.71
LIG1-216ENST00000598938 USP47Q96K76 1375 aa25.69■■□□□ 1.7
LIG1-216ENST00000598938 SBNO2Q9Y2G9 1366 aa25.69■■□□□ 1.7
LIG1-216ENST00000598938 SRCAPQ6ZRS2 3230 aa25.68■■□□□ 1.7
LIG1-216ENST00000598938 WASLO00401 505 aaPredicted RBP25.68■■□□□ 1.7
LIG1-216ENST00000598938 EP400Q96L91 3159 aa25.68■■□□□ 1.7
LIG1-216ENST00000598938 CCDC125Q86Z20 511 aa25.67■■□□□ 1.7
LIG1-216ENST00000598938 BCL9LQ86UU0 1499 aa25.66■■□□□ 1.7
LIG1-216ENST00000598938 ANKARQ7Z5J8 1434 aa25.65■■□□□ 1.7
LIG1-216ENST00000598938 TULP4Q9NRJ4 1543 aa25.65■■□□□ 1.7
LIG1-216ENST00000598938 USP32Q8NFA0 1604 aa25.64■■□□□ 1.7
LIG1-216ENST00000598938 ST20-MTHFSA0A0A6YYL1 179 aa25.63■■□□□ 1.69
LIG1-216ENST00000598938 NUTM2FA1L443 756 aa25.63■■□□□ 1.69
LIG1-216ENST00000598938 KIF1AQ12756 1690 aa25.63■■□□□ 1.69
LIG1-216ENST00000598938 ESCO1Q5FWF5 840 aa25.62■■□□□ 1.69
LIG1-216ENST00000598938 CDK19Q9BWU1 502 aa25.62■■□□□ 1.69
LIG1-216ENST00000598938 TESK2Q96S53 571 aa25.61■■□□□ 1.69
LIG1-216ENST00000598938 ZRANB1Q9UGI0 708 aa25.61■■□□□ 1.69
LIG1-216ENST00000598938 EVC2Q86UK5 1308 aa25.6■■□□□ 1.69
LIG1-216ENST00000598938 PRR36Q9H6K5 1346 aa25.6■■□□□ 1.69
LIG1-216ENST00000598938 ATP7BP35670 1465 aa25.6■■□□□ 1.69
LIG1-216ENST00000598938 RGPD8O14715 1765 aaPredicted RBP25.58■■□□□ 1.69
LIG1-216ENST00000598938 GJD4Q96KN9 370 aaPredicted RBP25.57■■□□□ 1.68
LIG1-216ENST00000598938 EIF4G2P78344 907 aaKnown RBP eCLIP25.56■■□□□ 1.68
LIG1-216ENST00000598938 SLIT2O94813 1529 aa25.55■■□□□ 1.68
LIG1-216ENST00000598938 FOXO3O43524 673 aa25.55■■□□□ 1.68
LIG1-216ENST00000598938 NUDT16Q96DE0 195 aaKnown RBP25.55■■□□□ 1.68
LIG1-216ENST00000598938 TOPAZ1Q8N9V7 1692 aa25.55■■□□□ 1.68
LIG1-216ENST00000598938 GLI3P10071 1580 aa25.54■■□□□ 1.68
LIG1-216ENST00000598938 SLC24A1O60721 1099 aa25.54■■□□□ 1.68
LIG1-216ENST00000598938 SRPK2P78362 688 aaKnown RBP25.54■■□□□ 1.68
LIG1-216ENST00000598938 HSPA5P11021 654 aaKnown RBP25.53■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms