RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 ADGRB1O14514 1584 aa15.81■□□□□ 0.12
VRK3-214ENST00000598553 YTHDC2Q9H6S0 1430 aaKnown RBP15.81■□□□□ 0.12
VRK3-214ENST00000598553 CFAP70Q5T0N1 1121 aa15.8■□□□□ 0.12
VRK3-214ENST00000598553 PNPLA6Q8IY17 1366 aa15.78■□□□□ 0.12
VRK3-214ENST00000598553 USP32Q8NFA0 1604 aa15.78■□□□□ 0.12
VRK3-214ENST00000598553 DHX57Q6P158 1386 aaKnown RBP15.77■□□□□ 0.12
VRK3-214ENST00000598553 ABCC11Q96J66 1382 aa15.77■□□□□ 0.12
VRK3-214ENST00000598553 NUTM2FA1L443 756 aa15.77■□□□□ 0.12
VRK3-214ENST00000598553 C14orf93Q9H972 538 aaKnown RBP15.77■□□□□ 0.12
VRK3-214ENST00000598553 NUTM2BA6NNL0 878 aaPredicted RBP15.76■□□□□ 0.11
VRK3-214ENST00000598553 NUTM2EB1AL46 878 aaPredicted RBP15.76■□□□□ 0.11
VRK3-214ENST00000598553 NUTM2AQ8IVF1 878 aaPredicted RBP15.76■□□□□ 0.11
VRK3-214ENST00000598553 SPATA31A6Q5VVP1 1343 aa15.75■□□□□ 0.11
VRK3-214ENST00000598553 ACIN1Q9UKV3 1341 aaKnown RBP15.75■□□□□ 0.11
VRK3-214ENST00000598553 ARHGEF28Q8N1W1 1705 aaKnown RBP15.75■□□□□ 0.11
VRK3-214ENST00000598553 PXDNQ92626 1479 aa15.75■□□□□ 0.11
VRK3-214ENST00000598553 COL22A1Q8NFW1 1626 aaPredicted RBP15.75■□□□□ 0.11
VRK3-214ENST00000598553 SOS2Q07890 1332 aaPredicted RBP15.73■□□□□ 0.11
VRK3-214ENST00000598553 XPCQ01831 940 aaPredicted RBP15.73■□□□□ 0.11
VRK3-214ENST00000598553 KDM2AQ9Y2K7 1162 aa15.73■□□□□ 0.11
VRK3-214ENST00000598553 MARF1Q9Y4F3 1742 aaKnown RBP15.73■□□□□ 0.11
VRK3-214ENST00000598553 DLC1Q96QB1 1528 aa15.73■□□□□ 0.11
VRK3-214ENST00000598553 KIF1AQ12756 1690 aa15.71■□□□□ 0.11
VRK3-214ENST00000598553 SAFB2Q14151 953 aaKnown RBP eCLIP15.71■□□□□ 0.11
VRK3-214ENST00000598553 ADGRB2O60241 1585 aa15.7■□□□□ 0.1
VRK3-214ENST00000598553 HRCP23327 699 aa15.7■□□□□ 0.1
VRK3-214ENST00000598553 ABCA3Q99758 1704 aa15.69■□□□□ 0.1
VRK3-214ENST00000598553 ESCO1Q5FWF5 840 aa15.69■□□□□ 0.1
VRK3-214ENST00000598553 MEX3CQ5U5Q3 659 aaKnown RBP15.69■□□□□ 0.1
VRK3-214ENST00000598553 DCAF11Q8TEB1 546 aa15.69■□□□□ 0.1
VRK3-214ENST00000598553 LRRC59Q96AG4 307 aaKnown RBP15.69■□□□□ 0.1
VRK3-214ENST00000598553 PRAM1Q96QH2 718 aa15.69■□□□□ 0.1
VRK3-214ENST00000598553 AFF2P51816 1311 aa15.68■□□□□ 0.1
VRK3-214ENST00000598553 FOXO3O43524 673 aa15.67■□□□□ 0.1
VRK3-214ENST00000598553 TRPM3Q9HCF6 1732 aaPredicted RBP15.66■□□□□ 0.1
VRK3-214ENST00000598553 TRAK1Q9UPV9 953 aa15.66■□□□□ 0.1
VRK3-214ENST00000598553 KIAA1210Q9ULL0 1709 aa15.65■□□□□ 0.1
VRK3-214ENST00000598553 ADAMTS2O95450 1211 aa15.65■□□□□ 0.1
VRK3-214ENST00000598553 C8orf37Q96NL8 207 aa15.65■□□□□ 0.1
VRK3-214ENST00000598553 SIRT1Q96EB6 747 aa15.64■□□□□ 0.09
VRK3-214ENST00000598553 HIRIP3Q9BW71 556 aaPredicted RBP15.64■□□□□ 0.09
VRK3-214ENST00000598553 PRR36Q9H6K5 1346 aa15.64■□□□□ 0.09
VRK3-214ENST00000598553 NPHP3Q7Z494 1330 aa15.63■□□□□ 0.09
VRK3-214ENST00000598553 MINK1Q8N4C8 1332 aaPredicted RBP15.62■□□□□ 0.09
VRK3-214ENST00000598553 CRYBG1Q9Y4K1 1723 aa15.61■□□□□ 0.09
VRK3-214ENST00000598553 TOPAZ1Q8N9V7 1692 aa15.6■□□□□ 0.09
VRK3-214ENST00000598553 ALS2Q96Q42 1657 aa15.6■□□□□ 0.09
VRK3-214ENST00000598553 RGS12O14924 1447 aa15.6■□□□□ 0.09
VRK3-214ENST00000598553 TULP4Q9NRJ4 1543 aa15.6■□□□□ 0.09
VRK3-214ENST00000598553 ZNF772Q68DY9 489 aaPredicted RBP15.6■□□□□ 0.09
VRK3-214ENST00000598553 NBPF1Q3BBV0 1214 aa15.59■□□□□ 0.09
VRK3-214ENST00000598553 SIN3AQ96ST3 1273 aa15.59■□□□□ 0.09
VRK3-214ENST00000598553 POGKQ9P215 609 aa15.59■□□□□ 0.09
VRK3-214ENST00000598553 PLCH1Q4KWH8 1693 aa15.59■□□□□ 0.09
VRK3-214ENST00000598553 TRPM1Q7Z4N2 1603 aa15.58■□□□□ 0.09
VRK3-214ENST00000598553 ITSN1Q15811 1721 aa15.58■□□□□ 0.08
VRK3-214ENST00000598553 PMFBP1Q8TBY8 1022 aa15.58■□□□□ 0.08
VRK3-214ENST00000598553 PHF8Q9UPP1 1060 aa15.58■□□□□ 0.08
VRK3-214ENST00000598553 SPATA31A3Q5VYP0 1347 aa15.58■□□□□ 0.08
VRK3-214ENST00000598553 ATP7BP35670 1465 aa15.58■□□□□ 0.08
VRK3-214ENST00000598553 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.57■□□□□ 0.08
VRK3-214ENST00000598553 KRT28Q7Z3Y7 464 aa15.57■□□□□ 0.08
VRK3-214ENST00000598553 TNS3Q68CZ2 1445 aa15.57■□□□□ 0.08
VRK3-214ENST00000598553 ANKARQ7Z5J8 1434 aa15.57■□□□□ 0.08
VRK3-214ENST00000598553 QRICH2Q9H0J4 1663 aa15.57■□□□□ 0.08
VRK3-214ENST00000598553 PLEKHG5O94827 1062 aa15.56■□□□□ 0.08
VRK3-214ENST00000598553 BCL9LQ86UU0 1499 aa15.56■□□□□ 0.08
VRK3-214ENST00000598553 CDK12Q9NYV4 1490 aaPredicted RBP15.55■□□□□ 0.08
VRK3-214ENST00000598553 CABLES1Q8TDN4 633 aa15.55■□□□□ 0.08
VRK3-214ENST00000598553 NGLY1Q96IV0 654 aa15.55■□□□□ 0.08
VRK3-214ENST00000598553 GLI3P10071 1580 aa15.54■□□□□ 0.08
VRK3-214ENST00000598553 ATRNO75882 1429 aa15.54■□□□□ 0.08
VRK3-214ENST00000598553 RXRBP28702 533 aa15.54■□□□□ 0.08
VRK3-214ENST00000598553 QTRT2Q9H974 415 aaKnown RBP15.54■□□□□ 0.08
VRK3-214ENST00000598553 NRAPQ86VF7 1730 aa15.54■□□□□ 0.08
VRK3-214ENST00000598553 BRWD3Q6RI45 1802 aa15.53■□□□□ 0.08
VRK3-214ENST00000598553 WASLO00401 505 aaPredicted RBP15.53■□□□□ 0.08
VRK3-214ENST00000598553 L3MBTL2Q969R5 705 aa15.53■□□□□ 0.08
VRK3-214ENST00000598553 FNBP4Q8N3X1 1017 aaPredicted RBP15.52■□□□□ 0.08
VRK3-214ENST00000598553 USP21Q9UK80 565 aa15.52■□□□□ 0.08
VRK3-214ENST00000598553 SLIT2O94813 1529 aa15.52■□□□□ 0.07
VRK3-214ENST00000598553 SBNO1A3KN83 1393 aa15.5■□□□□ 0.07
VRK3-214ENST00000598553 PHRF1Q9P1Y6 1649 aaKnown RBP15.5■□□□□ 0.07
VRK3-214ENST00000598553 UPF1Q92900 1129 aaKnown RBP eCLIP15.5■□□□□ 0.07
VRK3-214ENST00000598553 NWD2Q9ULI1 1742 aa15.5■□□□□ 0.07
VRK3-214ENST00000598553 RBM6P78332 1123 aaKnown RBP15.49■□□□□ 0.07
VRK3-214ENST00000598553 STAC3Q96MF2 364 aa15.49■□□□□ 0.07
VRK3-214ENST00000598553 NEUROD1Q13562 356 aa15.48■□□□□ 0.07
VRK3-214ENST00000598553 PSME1Q06323 249 aa15.46■□□□□ 0.07
VRK3-214ENST00000598553 NBPF8Q3BBV2 869 aa15.46■□□□□ 0.07
VRK3-214ENST00000598553 LMOD2Q6P5Q4 547 aa15.46■□□□□ 0.07
VRK3-214ENST00000598553 NUDT16Q96DE0 195 aaKnown RBP15.46■□□□□ 0.07
VRK3-214ENST00000598553 CDK19Q9BWU1 502 aa15.46■□□□□ 0.07
VRK3-214ENST00000598553 RALGAPBQ86X10 1494 aa15.46■□□□□ 0.06
VRK3-214ENST00000598553 TRPC5Q9UL62 973 aaPredicted RBP15.45■□□□□ 0.06
VRK3-214ENST00000598553 EIF3AQ14152 1382 aaKnown RBP15.44■□□□□ 0.06
VRK3-214ENST00000598553 COL14A1Q05707 1796 aaKnown RBP15.44■□□□□ 0.06
VRK3-214ENST00000598553 ARHGEF10O15013 1369 aa15.43■□□□□ 0.06
VRK3-214ENST00000598553 NRKQ7Z2Y5 1582 aa15.43■□□□□ 0.06
VRK3-214ENST00000598553 POLR3AO14802 1390 aaPredicted RBP15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms