RNA–Protein interactions for RNA: ENST00000596726.3

PNKP-209, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 637 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-209ENST00000596726 COL16A1Q07092 1604 aaPredicted RBP30.55■■■□□ 2.48
PNKP-209ENST00000596726 L3MBTL2Q969R5 705 aa30.52■■■□□ 2.48
PNKP-209ENST00000596726 MED1Q15648 1581 aaPredicted RBP30.51■■■□□ 2.47
PNKP-209ENST00000596726 NHSL1Q5SYE7 1610 aa30.51■■■□□ 2.47
PNKP-209ENST00000596726 NEUROD1Q13562 356 aa30.5■■■□□ 2.47
PNKP-209ENST00000596726 DISP3Q9P2K9 1392 aa30.5■■■□□ 2.47
PNKP-209ENST00000596726 PRAM1Q96QH2 718 aa30.49■■■□□ 2.47
PNKP-209ENST00000596726 TRAK1Q9UPV9 953 aa30.48■■■□□ 2.47
PNKP-209ENST00000596726 FMN2Q9NZ56 1722 aa30.46■■■□□ 2.47
PNKP-209ENST00000596726 ORAI2Q96SN7 254 aa30.44■■■□□ 2.46
PNKP-209ENST00000596726 JCADQ9P266 1359 aa30.43■■■□□ 2.46
PNKP-209ENST00000596726 ARHGEF28Q8N1W1 1705 aaKnown RBP30.43■■■□□ 2.46
PNKP-209ENST00000596726 POGKQ9P215 609 aa30.43■■■□□ 2.46
PNKP-209ENST00000596726 SAFB2Q14151 953 aaKnown RBP eCLIP30.41■■■□□ 2.46
PNKP-209ENST00000596726 NBPF1Q3BBV0 1214 aa30.41■■■□□ 2.46
PNKP-209ENST00000596726 ADGRB2O60241 1585 aa30.39■■■□□ 2.46
PNKP-209ENST00000596726 DDX17Q92841 729 aaKnown RBP30.38■■■□□ 2.45
PNKP-209ENST00000596726 SHPRHQ149N8 1683 aa30.38■■■□□ 2.45
PNKP-209ENST00000596726 RGPD8O14715 1765 aaPredicted RBP30.36■■■□□ 2.45
PNKP-209ENST00000596726 NUTM2FA1L443 756 aa30.35■■■□□ 2.45
PNKP-209ENST00000596726 ESCO1Q5FWF5 840 aa30.35■■■□□ 2.45
PNKP-209ENST00000596726 PCGF6Q9BYE7 350 aa30.35■■■□□ 2.45
PNKP-209ENST00000596726 TRPM1Q7Z4N2 1603 aa30.35■■■□□ 2.45
PNKP-209ENST00000596726 SOS2Q07890 1332 aaPredicted RBP30.32■■■□□ 2.44
PNKP-209ENST00000596726 LRRC59Q96AG4 307 aaKnown RBP30.32■■■□□ 2.44
PNKP-209ENST00000596726 MINK1Q8N4C8 1332 aaPredicted RBP30.3■■■□□ 2.44
PNKP-209ENST00000596726 SPATA31A6Q5VVP1 1343 aa30.29■■■□□ 2.44
PNKP-209ENST00000596726 HIRIP3Q9BW71 556 aaPredicted RBP30.29■■■□□ 2.44
PNKP-209ENST00000596726 USP32Q8NFA0 1604 aa30.29■■■□□ 2.44
PNKP-209ENST00000596726 KIF1AQ12756 1690 aa30.28■■■□□ 2.44
PNKP-209ENST00000596726 TONSLQ96HA7 1378 aa30.28■■■□□ 2.44
PNKP-209ENST00000596726 NPHP3Q7Z494 1330 aa30.27■■■□□ 2.44
PNKP-209ENST00000596726 NBPF8Q3BBV2 869 aa30.27■■■□□ 2.44
PNKP-209ENST00000596726 ANKARQ7Z5J8 1434 aa30.27■■■□□ 2.44
PNKP-209ENST00000596726 PXDNQ92626 1479 aa30.25■■■□□ 2.43
PNKP-209ENST00000596726 WASLO00401 505 aaPredicted RBP30.25■■■□□ 2.43
PNKP-209ENST00000596726 FOXO3O43524 673 aa30.25■■■□□ 2.43
PNKP-209ENST00000596726 ILDR2Q71H61 639 aa30.24■■■□□ 2.43
PNKP-209ENST00000596726 PNPLA6Q8IY17 1366 aa30.24■■■□□ 2.43
PNKP-209ENST00000596726 LRP6O75581 1613 aa30.23■■■□□ 2.43
PNKP-209ENST00000596726 PHF23Q9BUL5 403 aaPredicted RBP30.23■■■□□ 2.43
PNKP-209ENST00000596726 TULP4Q9NRJ4 1543 aa30.22■■■□□ 2.43
PNKP-209ENST00000596726 PHF8Q9UPP1 1060 aa30.22■■■□□ 2.43
PNKP-209ENST00000596726 EIF3AQ14152 1382 aaKnown RBP30.22■■■□□ 2.43
PNKP-209ENST00000596726 PRR36Q9H6K5 1346 aa30.2■■■□□ 2.42
PNKP-209ENST00000596726 ROCK2O75116 1388 aaKnown RBP30.19■■■□□ 2.42
PNKP-209ENST00000596726 RGS17Q9UGC6 210 aaPredicted RBP30.19■■■□□ 2.42
PNKP-209ENST00000596726 GPRASP1Q5JY77 1395 aa30.18■■■□□ 2.42
PNKP-209ENST00000596726 CENPJQ9HC77 1338 aaPredicted RBP30.18■■■□□ 2.42
PNKP-209ENST00000596726 XPCQ01831 940 aaPredicted RBP30.16■■■□□ 2.42
PNKP-209ENST00000596726 QRICH2Q9H0J4 1663 aa30.16■■■□□ 2.42
PNKP-209ENST00000596726 COL22A1Q8NFW1 1626 aaPredicted RBP30.15■■■□□ 2.42
PNKP-209ENST00000596726 CLSPNQ9HAW4 1339 aa30.15■■■□□ 2.42
PNKP-209ENST00000596726 CDK19Q9BWU1 502 aa30.14■■■□□ 2.42
PNKP-209ENST00000596726 KRT28Q7Z3Y7 464 aa30.13■■■□□ 2.41
PNKP-209ENST00000596726 ATP7BP35670 1465 aa30.12■■■□□ 2.41
PNKP-209ENST00000596726 RALGAPBQ86X10 1494 aa30.12■■■□□ 2.41
PNKP-209ENST00000596726 NUTM2BA6NNL0 878 aaPredicted RBP30.12■■■□□ 2.41
PNKP-209ENST00000596726 NUTM2EB1AL46 878 aaPredicted RBP30.12■■■□□ 2.41
PNKP-209ENST00000596726 NUTM2AQ8IVF1 878 aaPredicted RBP30.12■■■□□ 2.41
PNKP-209ENST00000596726 ITSN1Q15811 1721 aa30.12■■■□□ 2.41
PNKP-209ENST00000596726 PMFBP1Q8TBY8 1022 aa30.11■■■□□ 2.41
PNKP-209ENST00000596726 NUDT16Q96DE0 195 aaKnown RBP30.1■■■□□ 2.41
PNKP-209ENST00000596726 SPATA31A3Q5VYP0 1347 aa30.09■■■□□ 2.41
PNKP-209ENST00000596726 MEX3CQ5U5Q3 659 aaKnown RBP30.08■■■□□ 2.41
PNKP-209ENST00000596726 PSME1Q06323 249 aa30.07■■■□□ 2.4
PNKP-209ENST00000596726 TOPAZ1Q8N9V7 1692 aa30.07■■■□□ 2.4
PNKP-209ENST00000596726 SBNO1A3KN83 1393 aa30.06■■■□□ 2.4
PNKP-209ENST00000596726 CARD11Q9BXL7 1154 aa30.04■■■□□ 2.4
PNKP-209ENST00000596726 TRPM3Q9HCF6 1732 aaPredicted RBP30.04■■■□□ 2.4
PNKP-209ENST00000596726 POTEAQ6S8J7 498 aa30.03■■■□□ 2.4
PNKP-209ENST00000596726 TNS3Q68CZ2 1445 aa30.03■■■□□ 2.4
PNKP-209ENST00000596726 TIMELESSQ9UNS1 1208 aa30.02■■■□□ 2.4
PNKP-209ENST00000596726 CCDC61Q9Y6R9 512 aa30.02■■■□□ 2.4
PNKP-209ENST00000596726 PLEKHG3A1L390 1219 aa29.99■■■□□ 2.39
PNKP-209ENST00000596726 NGDNQ8NEJ9 315 aaKnown RBP29.99■■■□□ 2.39
PNKP-209ENST00000596726 SRPK2P78362 688 aaKnown RBP29.98■■■□□ 2.39
PNKP-209ENST00000596726 CABP2Q9NPB3 220 aa29.98■■■□□ 2.39
PNKP-209ENST00000596726 ADAMTS2O95450 1211 aa29.97■■■□□ 2.39
PNKP-209ENST00000596726 POLR3AO14802 1390 aaPredicted RBP29.97■■■□□ 2.39
PNKP-209ENST00000596726 ALS2Q96Q42 1657 aa29.97■■■□□ 2.39
PNKP-209ENST00000596726 EVC2Q86UK5 1308 aa29.96■■■□□ 2.39
PNKP-209ENST00000596726 MARF1Q9Y4F3 1742 aaKnown RBP29.96■■■□□ 2.39
PNKP-209ENST00000596726 SBNO2Q9Y2G9 1366 aa29.96■■■□□ 2.39
PNKP-209ENST00000596726 ZNF772Q68DY9 489 aaPredicted RBP29.96■■■□□ 2.39
PNKP-209ENST00000596726 ARHGEF10O15013 1369 aa29.95■■■□□ 2.39
PNKP-209ENST00000596726 C8orf37Q96NL8 207 aa29.95■■■□□ 2.39
PNKP-209ENST00000596726 AFF2P51816 1311 aa29.95■■■□□ 2.38
PNKP-209ENST00000596726 CCER1Q8TC90 406 aaPredicted RBP29.94■■■□□ 2.38
PNKP-209ENST00000596726 ACEP12821 1306 aa29.94■■■□□ 2.38
PNKP-209ENST00000596726 PPIP5K1Q6PFW1 1433 aa29.92■■■□□ 2.38
PNKP-209ENST00000596726 SOCS7O14512 581 aa29.9■■■□□ 2.38
PNKP-209ENST00000596726 ABCA3Q99758 1704 aa29.9■■■□□ 2.38
PNKP-209ENST00000596726 LMOD2Q6P5Q4 547 aa29.89■■■□□ 2.38
PNKP-209ENST00000596726 NGLY1Q96IV0 654 aa29.89■■■□□ 2.38
PNKP-209ENST00000596726 FNBP4Q8N3X1 1017 aaPredicted RBP29.87■■■□□ 2.37
PNKP-209ENST00000596726 CABLES1Q8TDN4 633 aa29.86■■■□□ 2.37
PNKP-209ENST00000596726 CABP1Q9NZU7 370 aa29.85■■■□□ 2.37
PNKP-209ENST00000596726 PAK3O75914 559 aaPredicted RBP29.84■■■□□ 2.37
PNKP-209ENST00000596726 CRYBG1Q9Y4K1 1723 aa29.83■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms