RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.49■□□□□ 0.87
SHKBP1-211ENST00000595945 CDCA8Q53HL2 280 aa20.48■□□□□ 0.87
SHKBP1-211ENST00000595945 AMOTL2Q9Y2J4 779 aa20.48■□□□□ 0.87
SHKBP1-211ENST00000595945 ADGRB2O60241 1585 aa20.47■□□□□ 0.87
SHKBP1-211ENST00000595945 WAPLQ7Z5K2 1190 aa20.47■□□□□ 0.87
SHKBP1-211ENST00000595945 PUS7Q96PZ0 661 aaKnown RBP20.47■□□□□ 0.87
SHKBP1-211ENST00000595945 EVC2Q86UK5 1308 aa20.44■□□□□ 0.86
SHKBP1-211ENST00000595945 SAFB2Q14151 953 aaKnown RBP eCLIP20.43■□□□□ 0.86
SHKBP1-211ENST00000595945 MINK1Q8N4C8 1332 aaPredicted RBP20.43■□□□□ 0.86
SHKBP1-211ENST00000595945 STRCP1A6NGW2 1772 aa20.42■□□□□ 0.86
SHKBP1-211ENST00000595945 POLR3GLQ9BT43 218 aa20.42■□□□□ 0.86
SHKBP1-211ENST00000595945 KCNA6P17658 529 aa20.41■□□□□ 0.86
SHKBP1-211ENST00000595945 NKTRP30414 1462 aaKnown RBP20.37■□□□□ 0.85
SHKBP1-211ENST00000595945 NALCNQ8IZF0 1738 aa20.37■□□□□ 0.85
SHKBP1-211ENST00000595945 CDK19Q9BWU1 502 aa20.36■□□□□ 0.85
SHKBP1-211ENST00000595945 WASLO00401 505 aaPredicted RBP20.35■□□□□ 0.85
SHKBP1-211ENST00000595945 CABP2Q9NPB3 220 aa20.35■□□□□ 0.85
SHKBP1-211ENST00000595945 ATAD2Q6PL18 1390 aa20.34■□□□□ 0.85
SHKBP1-211ENST00000595945 TOPAZ1Q8N9V7 1692 aa20.34■□□□□ 0.85
SHKBP1-211ENST00000595945 FMN2Q9NZ56 1722 aa20.33■□□□□ 0.85
SHKBP1-211ENST00000595945 NINLQ9Y2I6 1382 aa20.33■□□□□ 0.84
SHKBP1-211ENST00000595945 PANK3Q9H999 370 aa20.32■□□□□ 0.84
SHKBP1-211ENST00000595945 CDC42BPGQ6DT37 1551 aa20.32■□□□□ 0.84
SHKBP1-211ENST00000595945 USP32Q8NFA0 1604 aa20.31■□□□□ 0.84
SHKBP1-211ENST00000595945 PER1O15534 1290 aaPredicted RBP20.31■□□□□ 0.84
SHKBP1-211ENST00000595945 SRPK2P78362 688 aaKnown RBP20.31■□□□□ 0.84
SHKBP1-211ENST00000595945 MIER1Q8N108 512 aa20.31■□□□□ 0.84
SHKBP1-211ENST00000595945 ADGRL3Q9HAR2 1447 aa20.3■□□□□ 0.84
SHKBP1-211ENST00000595945 ATP7BP35670 1465 aa20.3■□□□□ 0.84
SHKBP1-211ENST00000595945 XIRP1Q702N8 1843 aaKnown RBP20.3■□□□□ 0.84
SHKBP1-211ENST00000595945 RGPD8O14715 1765 aaPredicted RBP20.29■□□□□ 0.84
SHKBP1-211ENST00000595945 ITSN1Q15811 1721 aa20.29■□□□□ 0.84
SHKBP1-211ENST00000595945 SLC12A5Q9H2X9 1139 aa20.28■□□□□ 0.84
SHKBP1-211ENST00000595945 AKAP12Q02952 1782 aa20.27■□□□□ 0.84
SHKBP1-211ENST00000595945 CD163L1Q9NR16 1453 aa20.27■□□□□ 0.84
SHKBP1-211ENST00000595945 NCOA3Q9Y6Q9 1424 aa20.27■□□□□ 0.83
SHKBP1-211ENST00000595945 ANKRD36BQ8N2N9 1353 aa20.26■□□□□ 0.83
SHKBP1-211ENST00000595945 DMRT2Q9Y5R5 561 aa20.26■□□□□ 0.83
SHKBP1-211ENST00000595945 PRR36Q9H6K5 1346 aa20.26■□□□□ 0.83
SHKBP1-211ENST00000595945 ANP32CO43423 234 aa20.25■□□□□ 0.83
SHKBP1-211ENST00000595945 ANKARQ7Z5J8 1434 aa20.25■□□□□ 0.83
SHKBP1-211ENST00000595945 PROSER2Q86WR7 435 aaPredicted RBP20.24■□□□□ 0.83
SHKBP1-211ENST00000595945 TMC1Q8TDI8 760 aa20.24■□□□□ 0.83
SHKBP1-211ENST00000595945 NUDT16Q96DE0 195 aaKnown RBP20.24■□□□□ 0.83
SHKBP1-211ENST00000595945 MON2Q7Z3U7 1717 aa20.23■□□□□ 0.83
SHKBP1-211ENST00000595945 CARD14Q9BXL6 1004 aa20.23■□□□□ 0.83
SHKBP1-211ENST00000595945 NPC1L1Q9UHC9 1359 aa20.22■□□□□ 0.83
SHKBP1-211ENST00000595945 PPIP5K1Q6PFW1 1433 aa20.22■□□□□ 0.83
SHKBP1-211ENST00000595945 PRKRIP1Q9H875 184 aaPredicted RBP20.22■□□□□ 0.83
SHKBP1-211ENST00000595945 A0A1W2PP64 1363 aa20.21■□□□□ 0.83
SHKBP1-211ENST00000595945 CABP1Q9NZU7 370 aa20.21■□□□□ 0.83
SHKBP1-211ENST00000595945 CCDC61Q9Y6R9 512 aa20.21■□□□□ 0.83
SHKBP1-211ENST00000595945 AMER1Q5JTC6 1135 aaPredicted RBP20.2■□□□□ 0.82
SHKBP1-211ENST00000595945 TMEM94Q12767 1356 aa20.2■□□□□ 0.82
SHKBP1-211ENST00000595945 KTN1Q86UP2 1357 aaKnown RBP20.2■□□□□ 0.82
SHKBP1-211ENST00000595945 CPSF1Q10570 1443 aaKnown RBP20.19■□□□□ 0.82
SHKBP1-211ENST00000595945 LRRC7Q96NW7 1537 aa20.19■□□□□ 0.82
SHKBP1-211ENST00000595945 RBM33Q96EV2 1170 aaKnown RBP20.19■□□□□ 0.82
SHKBP1-211ENST00000595945 KNSTRNQ9Y448 316 aa20.19■□□□□ 0.82
SHKBP1-211ENST00000595945 ZNF335Q9H4Z2 1342 aaPredicted RBP20.19■□□□□ 0.82
SHKBP1-211ENST00000595945 NSD3Q9BZ95 1437 aa20.19■□□□□ 0.82
SHKBP1-211ENST00000595945 PLEKHG3A1L390 1219 aa20.18■□□□□ 0.82
SHKBP1-211ENST00000595945 TERF2IPQ9NYB0 399 aa20.18■□□□□ 0.82
SHKBP1-211ENST00000595945 PARD3Q8TEW0 1356 aa20.18■□□□□ 0.82
SHKBP1-211ENST00000595945 DCCP43146 1447 aa20.18■□□□□ 0.82
SHKBP1-211ENST00000595945 ANKRD26Q9UPS8 1709 aa20.17■□□□□ 0.82
SHKBP1-211ENST00000595945 KIF20BQ96Q89 1820 aa20.17■□□□□ 0.82
SHKBP1-211ENST00000595945 NRKQ7Z2Y5 1582 aa20.16■□□□□ 0.82
SHKBP1-211ENST00000595945 CCER2I3L3R5 266 aa20.15■□□□□ 0.82
SHKBP1-211ENST00000595945 HDGFL2Q7Z4V5 671 aaPredicted RBP20.15■□□□□ 0.82
SHKBP1-211ENST00000595945 RALBP1Q15311 655 aa20.14■□□□□ 0.81
SHKBP1-211ENST00000595945 C19orf44Q9H6X5 657 aa20.14■□□□□ 0.81
SHKBP1-211ENST00000595945 POLR3AO14802 1390 aaPredicted RBP20.13■□□□□ 0.81
SHKBP1-211ENST00000595945 NUTM2FA1L443 756 aa20.12■□□□□ 0.81
SHKBP1-211ENST00000595945 C14orf37Q86TY3 774 aa20.12■□□□□ 0.81
SHKBP1-211ENST00000595945 EDC4Q6P2E9 1401 aaKnown RBP20.11■□□□□ 0.81
SHKBP1-211ENST00000595945 LTBP4Q8N2S1 1624 aa20.11■□□□□ 0.81
SHKBP1-211ENST00000595945 NSD2O96028 1365 aa20.1■□□□□ 0.81
SHKBP1-211ENST00000595945 CGNL1Q0VF96 1302 aa20.1■□□□□ 0.81
SHKBP1-211ENST00000595945 CC2D1BQ5T0F9 858 aaKnown RBP20.1■□□□□ 0.81
SHKBP1-211ENST00000595945 ZNF692Q9BU19 519 aaPredicted RBP20.1■□□□□ 0.81
SHKBP1-211ENST00000595945 MST1RQ04912 1400 aa20.1■□□□□ 0.81
SHKBP1-211ENST00000595945 KIF1AQ12756 1690 aa20.1■□□□□ 0.81
SHKBP1-211ENST00000595945 ACEP12821 1306 aa20.09■□□□□ 0.81
SHKBP1-211ENST00000595945 C1orf167Q5SNV9 1468 aa20.09■□□□□ 0.81
SHKBP1-211ENST00000595945 SSH2Q76I76 1423 aa20.09■□□□□ 0.81
SHKBP1-211ENST00000595945 USP6P35125 1406 aa20.08■□□□□ 0.8
SHKBP1-211ENST00000595945 MSH6P52701 1360 aa20.08■□□□□ 0.8
SHKBP1-211ENST00000595945 MYBBP1AQ9BQG0 1328 aaKnown RBP20.06■□□□□ 0.8
SHKBP1-211ENST00000595945 AEBP2Q6ZN18 517 aaPredicted RBP20.06■□□□□ 0.8
SHKBP1-211ENST00000595945 CNGB1Q14028 1251 aaPredicted RBP20.05■□□□□ 0.8
SHKBP1-211ENST00000595945 PHF8Q9UPP1 1060 aa20.05■□□□□ 0.8
SHKBP1-211ENST00000595945 FYB1O15117 783 aa20.04■□□□□ 0.8
SHKBP1-211ENST00000595945 ATF3P18847 181 aa20.04■□□□□ 0.8
SHKBP1-211ENST00000595945 CADPS2Q86UW7 1296 aa20.04■□□□□ 0.8
SHKBP1-211ENST00000595945 PMFBP1Q8TBY8 1022 aa20.04■□□□□ 0.8
SHKBP1-211ENST00000595945 USP54Q70EL1 1684 aa20.03■□□□□ 0.8
SHKBP1-211ENST00000595945 CCDC184Q52MB2 194 aa20.02■□□□□ 0.8
SHKBP1-211ENST00000595945 BRD4O60885 1362 aaPredicted RBP20.02■□□□□ 0.8
SHKBP1-211ENST00000595945 TTC21BQ7Z4L5 1316 aa20.02■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms