RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 KIF3BO15066 747 aa19.09■□□□□ 0.65
SMARCA4-219ENST00000592604 RUNDC1Q96C34 613 aa19.08■□□□□ 0.65
SMARCA4-219ENST00000592604 SETBP1Q9Y6X0 1596 aa19.08■□□□□ 0.65
SMARCA4-219ENST00000592604 ABCA9Q8IUA7 1624 aa19.08■□□□□ 0.65
SMARCA4-219ENST00000592604 CANXP27824 592 aaKnown RBP19.08■□□□□ 0.64
SMARCA4-219ENST00000592604 RARSP54136 660 aaKnown RBP19.07■□□□□ 0.64
SMARCA4-219ENST00000592604 PMFBP1Q8TBY8 1022 aa19.07■□□□□ 0.64
SMARCA4-219ENST00000592604 IQSEC2Q5JU85 1478 aa19.07■□□□□ 0.64
SMARCA4-219ENST00000592604 NLRP1Q9C000 1473 aa19.07■□□□□ 0.64
SMARCA4-219ENST00000592604 SEC24BO95487 1268 aa19.07■□□□□ 0.64
SMARCA4-219ENST00000592604 EFCAB6Q5THR3 1501 aa19.07■□□□□ 0.64
SMARCA4-219ENST00000592604 MROH2AA6NES4 1674 aa19.06■□□□□ 0.64
SMARCA4-219ENST00000592604 WDR63Q8IWG1 891 aa19.06■□□□□ 0.64
SMARCA4-219ENST00000592604 BECN1Q14457 450 aa19.06■□□□□ 0.64
SMARCA4-219ENST00000592604 NSD3Q9BZ95 1437 aa19.05■□□□□ 0.64
SMARCA4-219ENST00000592604 NCBP3Q53F19 620 aaKnown RBP19.05■□□□□ 0.64
SMARCA4-219ENST00000592604 MORC1Q86VD1 984 aa19.04■□□□□ 0.64
SMARCA4-219ENST00000592604 FANCAO15360 1455 aa19.04■□□□□ 0.64
SMARCA4-219ENST00000592604 CCDC27Q2M243 656 aa19.04■□□□□ 0.64
SMARCA4-219ENST00000592604 USP32Q8NFA0 1604 aa19.04■□□□□ 0.64
SMARCA4-219ENST00000592604 ZC3H13Q5T200 1668 aaKnown RBP19.04■□□□□ 0.64
SMARCA4-219ENST00000592604 TCP11L2Q8N4U5 519 aa19.03■□□□□ 0.64
SMARCA4-219ENST00000592604 LMTK2Q8IWU2 1503 aa19.03■□□□□ 0.64
SMARCA4-219ENST00000592604 PCDHB15Q9Y5E8 787 aa19.02■□□□□ 0.64
SMARCA4-219ENST00000592604 ADGRB3O60242 1522 aa19.02■□□□□ 0.63
SMARCA4-219ENST00000592604 PPRC1Q5VV67 1664 aaKnown RBP19.01■□□□□ 0.63
SMARCA4-219ENST00000592604 NOS1P29475 1434 aa19■□□□□ 0.63
SMARCA4-219ENST00000592604 RLBP1P12271 317 aa19■□□□□ 0.63
SMARCA4-219ENST00000592604 ZNF518AQ6AHZ1 1483 aa19■□□□□ 0.63
SMARCA4-219ENST00000592604 QRICH2Q9H0J4 1663 aa18.99■□□□□ 0.63
SMARCA4-219ENST00000592604 NEUROD2Q15784 382 aa18.99■□□□□ 0.63
SMARCA4-219ENST00000592604 SLC12A5Q9H2X9 1139 aa18.99■□□□□ 0.63
SMARCA4-219ENST00000592604 RRP7AQ9Y3A4 280 aaKnown RBP18.99■□□□□ 0.63
SMARCA4-219ENST00000592604 ADGRL1O94910 1474 aa18.99■□□□□ 0.63
SMARCA4-219ENST00000592604 TBC1D32Q96NH3 1257 aa18.98■□□□□ 0.63
SMARCA4-219ENST00000592604 ANTXR1Q9H6X2 564 aa18.98■□□□□ 0.63
SMARCA4-219ENST00000592604 C14orf93Q9H972 538 aaKnown RBP18.98■□□□□ 0.63
SMARCA4-219ENST00000592604 PDZRN3Q9UPQ7 1066 aa18.98■□□□□ 0.63
SMARCA4-219ENST00000592604 ADGRB1O14514 1584 aa18.97■□□□□ 0.63
SMARCA4-219ENST00000592604 PPLO60437 1756 aa18.97■□□□□ 0.63
SMARCA4-219ENST00000592604 RWDD1Q9H446 243 aaPredicted RBP18.97■□□□□ 0.63
SMARCA4-219ENST00000592604 UPF2Q9HAU5 1272 aaKnown RBP18.97■□□□□ 0.63
SMARCA4-219ENST00000592604 MTHFSP49914 203 aa18.96■□□□□ 0.63
SMARCA4-219ENST00000592604 TNNQ9UQP3 1299 aa18.96■□□□□ 0.63
SMARCA4-219ENST00000592604 CFAP53Q96M91 514 aa18.96■□□□□ 0.63
SMARCA4-219ENST00000592604 PUS7Q96PZ0 661 aaKnown RBP18.96■□□□□ 0.63
SMARCA4-219ENST00000592604 KIDINS220Q9ULH0 1771 aa18.96■□□□□ 0.63
SMARCA4-219ENST00000592604 TRAK1Q9UPV9 953 aa18.95■□□□□ 0.62
SMARCA4-219ENST00000592604 TNNT2P45379 298 aaPredicted RBP18.95■□□□□ 0.62
SMARCA4-219ENST00000592604 MYH16Q9H6N6 1097 aa18.95■□□□□ 0.62
SMARCA4-219ENST00000592604 POGKQ9P215 609 aa18.93■□□□□ 0.62
SMARCA4-219ENST00000592604 NSD2O96028 1365 aa18.92■□□□□ 0.62
SMARCA4-219ENST00000592604 ADGRB2O60241 1585 aa18.92■□□□□ 0.62
SMARCA4-219ENST00000592604 CT47B1P0C2W7 299 aaPredicted RBP18.92■□□□□ 0.62
SMARCA4-219ENST00000592604 MVPQ14764 893 aaKnown RBP18.92■□□□□ 0.62
SMARCA4-219ENST00000592604 FAM43AQ8N2R8 423 aa18.92■□□□□ 0.62
SMARCA4-219ENST00000592604 SLKQ9H2G2 1235 aaPredicted RBP18.92■□□□□ 0.62
SMARCA4-219ENST00000592604 BCL2L13Q9BXK5 485 aa18.91■□□□□ 0.62
SMARCA4-219ENST00000592604 TBC1D2Q9BYX2 928 aa18.91■□□□□ 0.62
SMARCA4-219ENST00000592604 RPGRIP1LQ68CZ1 1315 aa18.91■□□□□ 0.62
SMARCA4-219ENST00000592604 ZKSCAN2Q63HK3 967 aa18.9■□□□□ 0.62
SMARCA4-219ENST00000592604 ANKRD36BQ8N2N9 1353 aa18.89■□□□□ 0.61
SMARCA4-219ENST00000592604 NPATQ14207 1427 aa18.88■□□□□ 0.61
SMARCA4-219ENST00000592604 CHGAP10645 457 aaKnown RBP18.88■□□□□ 0.61
SMARCA4-219ENST00000592604 DZIP1LQ8IYY4 767 aaKnown RBP18.88■□□□□ 0.61
SMARCA4-219ENST00000592604 TMEM132EQ6IEE7 984 aa18.87■□□□□ 0.61
SMARCA4-219ENST00000592604 L1TD1Q5T7N2 865 aaKnown RBP18.86■□□□□ 0.61
SMARCA4-219ENST00000592604 EVC2Q86UK5 1308 aa18.86■□□□□ 0.61
SMARCA4-219ENST00000592604 U2AF1L5P0DN76 240 aaPredicted RBP18.86■□□□□ 0.61
SMARCA4-219ENST00000592604 U2AF1Q01081 240 aaKnown RBP eCLIP18.86■□□□□ 0.61
SMARCA4-219ENST00000592604 CFAP65Q6ZU64 1925 aaKnown RBP18.85■□□□□ 0.61
SMARCA4-219ENST00000592604 HDAC1Q13547 482 aaPredicted RBP18.85■□□□□ 0.61
SMARCA4-219ENST00000592604 TULP4Q9NRJ4 1543 aa18.85■□□□□ 0.61
SMARCA4-219ENST00000592604 GLI2P10070 1586 aa18.84■□□□□ 0.61
SMARCA4-219ENST00000592604 FTSJ3Q8IY81 847 aaKnown RBP18.84■□□□□ 0.61
SMARCA4-219ENST00000592604 ARHGEF28Q8N1W1 1705 aaKnown RBP18.84■□□□□ 0.61
SMARCA4-219ENST00000592604 PLEKHF1Q96S99 279 aa18.82■□□□□ 0.6
SMARCA4-219ENST00000592604 C22orf23Q9BZE7 217 aa18.81■□□□□ 0.6
SMARCA4-219ENST00000592604 DDX19BQ9UMR2 479 aa18.81■□□□□ 0.6
SMARCA4-219ENST00000592604 TRIM27P14373 513 aa18.8■□□□□ 0.6
SMARCA4-219ENST00000592604 CD109Q6YHK3 1445 aa18.8■□□□□ 0.6
SMARCA4-219ENST00000592604 ASXL2Q76L83 1435 aa18.8■□□□□ 0.6
SMARCA4-219ENST00000592604 EXOSC9Q06265 439 aaKnown RBP18.8■□□□□ 0.6
SMARCA4-219ENST00000592604 SMC4Q9NTJ3 1288 aa18.8■□□□□ 0.6
SMARCA4-219ENST00000592604 IL16Q14005 1332 aa18.8■□□□□ 0.6
SMARCA4-219ENST00000592604 FRMPD1Q5SYB0 1578 aa18.8■□□□□ 0.6
SMARCA4-219ENST00000592604 HECW2Q9P2P5 1572 aa18.8■□□□□ 0.6
SMARCA4-219ENST00000592604 MCM4P33991 863 aa18.8■□□□□ 0.6
SMARCA4-219ENST00000592604 TMPOP42166 694 aaKnown RBP18.8■□□□□ 0.6
SMARCA4-219ENST00000592604 SMC5Q8IY18 1101 aa18.8■□□□□ 0.6
SMARCA4-219ENST00000592604 TSR2Q969E8 191 aaKnown RBP18.8■□□□□ 0.6
SMARCA4-219ENST00000592604 TRIM35Q9UPQ4 493 aa18.79■□□□□ 0.6
SMARCA4-219ENST00000592604 ABCC11Q96J66 1382 aa18.79■□□□□ 0.6
SMARCA4-219ENST00000592604 ATF7IPQ6VMQ6 1270 aa18.79■□□□□ 0.6
SMARCA4-219ENST00000592604 SSH1Q8WYL5 1049 aa18.79■□□□□ 0.6
SMARCA4-219ENST00000592604 COL3A1P02461 1466 aaPredicted RBP18.79■□□□□ 0.6
SMARCA4-219ENST00000592604 CHMP5Q9NZZ3 219 aa18.78■□□□□ 0.6
SMARCA4-219ENST00000592604 MLH3Q9UHC1 1453 aa18.78■□□□□ 0.6
SMARCA4-219ENST00000592604 RSPH6AQ9H0K4 717 aa18.78■□□□□ 0.6
SMARCA4-219ENST00000592604 VGFO15240 615 aaPredicted RBP18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms