RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 LAMC1P11047 1609 aa15.94■□□□□ 0.14
LIG3-214ENST00000592244 COL16A1Q07092 1604 aaPredicted RBP15.94■□□□□ 0.14
LIG3-214ENST00000592244 ESCO1Q5FWF5 840 aa15.93■□□□□ 0.14
LIG3-214ENST00000592244 NALCNQ8IZF0 1738 aa15.93■□□□□ 0.14
LIG3-214ENST00000592244 ORAI2Q96SN7 254 aa15.92■□□□□ 0.14
LIG3-214ENST00000592244 NPHP3Q7Z494 1330 aa15.92■□□□□ 0.14
LIG3-214ENST00000592244 CDC42BPGQ6DT37 1551 aa15.92■□□□□ 0.14
LIG3-214ENST00000592244 ZNF772Q68DY9 489 aaPredicted RBP15.9■□□□□ 0.14
LIG3-214ENST00000592244 PRAM1Q96QH2 718 aa15.9■□□□□ 0.14
LIG3-214ENST00000592244 NUTM2BA6NNL0 878 aaPredicted RBP15.89■□□□□ 0.13
LIG3-214ENST00000592244 NUTM2EB1AL46 878 aaPredicted RBP15.89■□□□□ 0.13
LIG3-214ENST00000592244 NUTM2AQ8IVF1 878 aaPredicted RBP15.89■□□□□ 0.13
LIG3-214ENST00000592244 PLEKHH1Q9ULM0 1364 aa15.88■□□□□ 0.13
LIG3-214ENST00000592244 KNDC1Q76NI1 1749 aa15.88■□□□□ 0.13
LIG3-214ENST00000592244 DDX17Q92841 729 aaKnown RBP15.88■□□□□ 0.13
LIG3-214ENST00000592244 RGS17Q9UGC6 210 aaPredicted RBP15.88■□□□□ 0.13
LIG3-214ENST00000592244 TRAK1Q9UPV9 953 aa15.88■□□□□ 0.13
LIG3-214ENST00000592244 SOS2Q07890 1332 aaPredicted RBP15.88■□□□□ 0.13
LIG3-214ENST00000592244 NUTM2FA1L443 756 aa15.87■□□□□ 0.13
LIG3-214ENST00000592244 SHPRHQ149N8 1683 aa15.86■□□□□ 0.13
LIG3-214ENST00000592244 DLC1Q96QB1 1528 aa15.86■□□□□ 0.13
LIG3-214ENST00000592244 SAFB2Q14151 953 aaKnown RBP eCLIP15.86■□□□□ 0.13
LIG3-214ENST00000592244 NHSL1Q5SYE7 1610 aa15.86■□□□□ 0.13
LIG3-214ENST00000592244 EIF3AQ14152 1382 aaKnown RBP15.86■□□□□ 0.13
LIG3-214ENST00000592244 PNPLA6Q8IY17 1366 aa15.86■□□□□ 0.13
LIG3-214ENST00000592244 FOXO3O43524 673 aa15.85■□□□□ 0.13
LIG3-214ENST00000592244 PSME1Q06323 249 aa15.83■□□□□ 0.12
LIG3-214ENST00000592244 POTEAQ6S8J7 498 aa15.83■□□□□ 0.12
LIG3-214ENST00000592244 TRIM26Q12899 539 aaPredicted RBP15.82■□□□□ 0.12
LIG3-214ENST00000592244 PHF8Q9UPP1 1060 aa15.82■□□□□ 0.12
LIG3-214ENST00000592244 ADGRB1O14514 1584 aa15.82■□□□□ 0.12
LIG3-214ENST00000592244 LRP6O75581 1613 aa15.82■□□□□ 0.12
LIG3-214ENST00000592244 C8orf37Q96NL8 207 aa15.81■□□□□ 0.12
LIG3-214ENST00000592244 ANKARQ7Z5J8 1434 aa15.8■□□□□ 0.12
LIG3-214ENST00000592244 MINK1Q8N4C8 1332 aaPredicted RBP15.8■□□□□ 0.12
LIG3-214ENST00000592244 NGLY1Q96IV0 654 aa15.8■□□□□ 0.12
LIG3-214ENST00000592244 ADAMTS2O95450 1211 aa15.79■□□□□ 0.12
LIG3-214ENST00000592244 KRT28Q7Z3Y7 464 aa15.79■□□□□ 0.12
LIG3-214ENST00000592244 AFF2P51816 1311 aa15.78■□□□□ 0.12
LIG3-214ENST00000592244 WASLO00401 505 aaPredicted RBP15.78■□□□□ 0.12
LIG3-214ENST00000592244 RXRBP28702 533 aa15.78■□□□□ 0.12
LIG3-214ENST00000592244 XPCQ01831 940 aaPredicted RBP15.78■□□□□ 0.12
LIG3-214ENST00000592244 NEUROD1Q13562 356 aa15.78■□□□□ 0.12
LIG3-214ENST00000592244 HIRIP3Q9BW71 556 aaPredicted RBP15.78■□□□□ 0.12
LIG3-214ENST00000592244 FMN2Q9NZ56 1722 aa15.77■□□□□ 0.11
LIG3-214ENST00000592244 KIF1AQ12756 1690 aa15.76■□□□□ 0.11
LIG3-214ENST00000592244 HAP1P54257 671 aaPredicted RBP15.76■□□□□ 0.11
LIG3-214ENST00000592244 L3MBTL2Q969R5 705 aa15.76■□□□□ 0.11
LIG3-214ENST00000592244 PXDNQ92626 1479 aa15.76■□□□□ 0.11
LIG3-214ENST00000592244 GPRASP1Q5JY77 1395 aa15.75■□□□□ 0.11
LIG3-214ENST00000592244 SPATA31A3Q5VYP0 1347 aa15.75■□□□□ 0.11
LIG3-214ENST00000592244 ADGRB2O60241 1585 aa15.75■□□□□ 0.11
LIG3-214ENST00000592244 SIN3AQ96ST3 1273 aa15.74■□□□□ 0.11
LIG3-214ENST00000592244 SBNO1A3KN83 1393 aa15.74■□□□□ 0.11
LIG3-214ENST00000592244 ARHGEF10O15013 1369 aa15.74■□□□□ 0.11
LIG3-214ENST00000592244 LMOD2Q6P5Q4 547 aa15.73■□□□□ 0.11
LIG3-214ENST00000592244 NGDNQ8NEJ9 315 aaKnown RBP15.73■□□□□ 0.11
LIG3-214ENST00000592244 PMFBP1Q8TBY8 1022 aa15.73■□□□□ 0.11
LIG3-214ENST00000592244 QTRT2Q9H974 415 aaKnown RBP15.73■□□□□ 0.11
LIG3-214ENST00000592244 KIAA1210Q9ULL0 1709 aa15.72■□□□□ 0.11
LIG3-214ENST00000592244 NBPF1Q3BBV0 1214 aa15.72■□□□□ 0.11
LIG3-214ENST00000592244 USP21Q9UK80 565 aa15.72■□□□□ 0.11
LIG3-214ENST00000592244 TULP4Q9NRJ4 1543 aa15.72■□□□□ 0.11
LIG3-214ENST00000592244 TNS3Q68CZ2 1445 aa15.71■□□□□ 0.11
LIG3-214ENST00000592244 RBM6P78332 1123 aaKnown RBP15.71■□□□□ 0.11
LIG3-214ENST00000592244 TRPC5Q9UL62 973 aaPredicted RBP15.71■□□□□ 0.11
LIG3-214ENST00000592244 CENPJQ9HC77 1338 aaPredicted RBP15.7■□□□□ 0.1
LIG3-214ENST00000592244 FNBP4Q8N3X1 1017 aaPredicted RBP15.7■□□□□ 0.1
LIG3-214ENST00000592244 NUDT16Q96DE0 195 aaKnown RBP15.7■□□□□ 0.1
LIG3-214ENST00000592244 CDK19Q9BWU1 502 aa15.7■□□□□ 0.1
LIG3-214ENST00000592244 COL22A1Q8NFW1 1626 aaPredicted RBP15.69■□□□□ 0.1
LIG3-214ENST00000592244 CCDC61Q9Y6R9 512 aa15.69■□□□□ 0.1
LIG3-214ENST00000592244 CDK12Q9NYV4 1490 aaPredicted RBP15.68■□□□□ 0.1
LIG3-214ENST00000592244 ROCK2O75116 1388 aaKnown RBP15.68■□□□□ 0.1
LIG3-214ENST00000592244 TONSLQ96HA7 1378 aa15.68■□□□□ 0.1
LIG3-214ENST00000592244 PAK3O75914 559 aaPredicted RBP15.67■□□□□ 0.1
LIG3-214ENST00000592244 SRPK2P78362 688 aaKnown RBP15.67■□□□□ 0.1
LIG3-214ENST00000592244 PRR36Q9H6K5 1346 aa15.67■□□□□ 0.1
LIG3-214ENST00000592244 ARHGEF28Q8N1W1 1705 aaKnown RBP15.65■□□□□ 0.1
LIG3-214ENST00000592244 EVC2Q86UK5 1308 aa15.64■□□□□ 0.09
LIG3-214ENST00000592244 PLEKHG5O94827 1062 aa15.63■□□□□ 0.09
LIG3-214ENST00000592244 ATP7BP35670 1465 aa15.63■□□□□ 0.09
LIG3-214ENST00000592244 USP32Q8NFA0 1604 aa15.62■□□□□ 0.09
LIG3-214ENST00000592244 PLEKHG3A1L390 1219 aa15.62■□□□□ 0.09
LIG3-214ENST00000592244 UNC5CLQ8IV45 518 aa15.62■□□□□ 0.09
LIG3-214ENST00000592244 CABLES1Q8TDN4 633 aa15.62■□□□□ 0.09
LIG3-214ENST00000592244 NBPF8Q3BBV2 869 aa15.61■□□□□ 0.09
LIG3-214ENST00000592244 ACEP12821 1306 aa15.61■□□□□ 0.09
LIG3-214ENST00000592244 ATRNO75882 1429 aa15.6■□□□□ 0.09
LIG3-214ENST00000592244 RGPD8O14715 1765 aaPredicted RBP15.6■□□□□ 0.09
LIG3-214ENST00000592244 GJD4Q96KN9 370 aaPredicted RBP15.6■□□□□ 0.09
LIG3-214ENST00000592244 CARD11Q9BXL7 1154 aa15.6■□□□□ 0.09
LIG3-214ENST00000592244 POLR3AO14802 1390 aaPredicted RBP15.6■□□□□ 0.09
LIG3-214ENST00000592244 CABP2Q9NPB3 220 aa15.59■□□□□ 0.09
LIG3-214ENST00000592244 ITSN1Q15811 1721 aa15.59■□□□□ 0.09
LIG3-214ENST00000592244 BRD4O60885 1362 aaPredicted RBP15.59■□□□□ 0.09
LIG3-214ENST00000592244 BCL9LQ86UU0 1499 aa15.59■□□□□ 0.09
LIG3-214ENST00000592244 CCDC9Q9Y3X0 531 aaKnown RBP15.58■□□□□ 0.08
LIG3-214ENST00000592244 PPIP5K1Q6PFW1 1433 aa15.58■□□□□ 0.08
LIG3-214ENST00000592244 SLC24A1O60721 1099 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms