RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 FNBP4Q8N3X1 1017 aaPredicted RBP20.93■□□□□ 0.94
VMP1-209ENST00000588915 TECPR2O15040 1411 aa20.91■□□□□ 0.94
VMP1-209ENST00000588915 ESCO1Q5FWF5 840 aa20.91■□□□□ 0.94
VMP1-209ENST00000588915 SPATA31E1Q6ZUB1 1445 aa20.91■□□□□ 0.94
VMP1-209ENST00000588915 ADGRF5Q8IZF2 1346 aa20.91■□□□□ 0.94
VMP1-209ENST00000588915 CDC42BPGQ6DT37 1551 aa20.9■□□□□ 0.94
VMP1-209ENST00000588915 RGS12O14924 1447 aa20.9■□□□□ 0.94
VMP1-209ENST00000588915 ABCC11Q96J66 1382 aa20.9■□□□□ 0.94
VMP1-209ENST00000588915 FOXD1Q16676 465 aa20.9■□□□□ 0.94
VMP1-209ENST00000588915 MPHOSPH9Q99550 1183 aa20.9■□□□□ 0.94
VMP1-209ENST00000588915 USP21Q9UK80 565 aa20.9■□□□□ 0.94
VMP1-209ENST00000588915 TRPC5Q9UL62 973 aaPredicted RBP20.9■□□□□ 0.94
VMP1-209ENST00000588915 LRPPRCP42704 1394 aaKnown RBP20.89■□□□□ 0.93
VMP1-209ENST00000588915 RGL3Q3MIN7 710 aa20.89■□□□□ 0.93
VMP1-209ENST00000588915 COL22A1Q8NFW1 1626 aaPredicted RBP20.88■□□□□ 0.93
VMP1-209ENST00000588915 SIRT1Q96EB6 747 aa20.87■□□□□ 0.93
VMP1-209ENST00000588915 FOXO3O43524 673 aa20.85■□□□□ 0.93
VMP1-209ENST00000588915 WAPLQ7Z5K2 1190 aa20.85■□□□□ 0.93
VMP1-209ENST00000588915 STK26Q9P289 416 aa20.85■□□□□ 0.93
VMP1-209ENST00000588915 MYOM2P54296 1465 aa20.84■□□□□ 0.93
VMP1-209ENST00000588915 PXDNQ92626 1479 aa20.84■□□□□ 0.93
VMP1-209ENST00000588915 PIK3C2GO75747 1445 aa20.83■□□□□ 0.93
VMP1-209ENST00000588915 IFT172Q9UG01 1749 aa20.82■□□□□ 0.92
VMP1-209ENST00000588915 ATRNO75882 1429 aa20.82■□□□□ 0.92
VMP1-209ENST00000588915 TMEM132EQ6IEE7 984 aa20.82■□□□□ 0.92
VMP1-209ENST00000588915 ATAD2Q6PL18 1390 aa20.82■□□□□ 0.92
VMP1-209ENST00000588915 YTHDC2Q9H6S0 1430 aaKnown RBP20.8■□□□□ 0.92
VMP1-209ENST00000588915 C14orf93Q9H972 538 aaKnown RBP20.8■□□□□ 0.92
VMP1-209ENST00000588915 KNDC1Q76NI1 1749 aa20.8■□□□□ 0.92
VMP1-209ENST00000588915 BCL9LQ86UU0 1499 aa20.77■□□□□ 0.92
VMP1-209ENST00000588915 PLEKHH1Q9ULM0 1364 aa20.77■□□□□ 0.92
VMP1-209ENST00000588915 NUTM2FA1L443 756 aa20.77■□□□□ 0.92
VMP1-209ENST00000588915 SPATA31A3Q5VYP0 1347 aa20.77■□□□□ 0.91
VMP1-209ENST00000588915 XPCQ01831 940 aaPredicted RBP20.76■□□□□ 0.91
VMP1-209ENST00000588915 DHX57Q6P158 1386 aaKnown RBP20.75■□□□□ 0.91
VMP1-209ENST00000588915 CCDC125Q86Z20 511 aa20.75■□□□□ 0.91
VMP1-209ENST00000588915 GJD4Q96KN9 370 aaPredicted RBP20.75■□□□□ 0.91
VMP1-209ENST00000588915 NRXN1Q9ULB1 1477 aa20.75■□□□□ 0.91
VMP1-209ENST00000588915 KRT28Q7Z3Y7 464 aa20.74■□□□□ 0.91
VMP1-209ENST00000588915 FMN2Q9NZ56 1722 aa20.74■□□□□ 0.91
VMP1-209ENST00000588915 MARF1Q9Y4F3 1742 aaKnown RBP20.74■□□□□ 0.91
VMP1-209ENST00000588915 KIF1AQ12756 1690 aa20.73■□□□□ 0.91
VMP1-209ENST00000588915 PSME1Q06323 249 aa20.73■□□□□ 0.91
VMP1-209ENST00000588915 UNC5CLQ8IV45 518 aa20.72■□□□□ 0.91
VMP1-209ENST00000588915 CFAP70Q5T0N1 1121 aa20.71■□□□□ 0.91
VMP1-209ENST00000588915 PHF8Q9UPP1 1060 aa20.71■□□□□ 0.91
VMP1-209ENST00000588915 SLIT2O94813 1529 aa20.7■□□□□ 0.9
VMP1-209ENST00000588915 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.68■□□□□ 0.9
VMP1-209ENST00000588915 PRAM1Q96QH2 718 aa20.67■□□□□ 0.9
VMP1-209ENST00000588915 SBNO1A3KN83 1393 aa20.67■□□□□ 0.9
VMP1-209ENST00000588915 TNS3Q68CZ2 1445 aa20.66■□□□□ 0.9
VMP1-209ENST00000588915 DLC1Q96QB1 1528 aa20.65■□□□□ 0.9
VMP1-209ENST00000588915 STAC3Q96MF2 364 aa20.65■□□□□ 0.9
VMP1-209ENST00000588915 ZRANB1Q9UGI0 708 aa20.65■□□□□ 0.9
VMP1-209ENST00000588915 HAP1P54257 671 aaPredicted RBP20.64■□□□□ 0.89
VMP1-209ENST00000588915 POGKQ9P215 609 aa20.64■□□□□ 0.89
VMP1-209ENST00000588915 RALGAPBQ86X10 1494 aa20.63■□□□□ 0.89
VMP1-209ENST00000588915 ANKARQ7Z5J8 1434 aa20.63■□□□□ 0.89
VMP1-209ENST00000588915 ARHGEF10O15013 1369 aa20.63■□□□□ 0.89
VMP1-209ENST00000588915 USP32Q8NFA0 1604 aa20.63■□□□□ 0.89
VMP1-209ENST00000588915 VPS72Q15906 364 aa20.62■□□□□ 0.89
VMP1-209ENST00000588915 ONECUT3O60422 494 aaPredicted RBP20.61■□□□□ 0.89
VMP1-209ENST00000588915 EP400Q96L91 3159 aa20.61■□□□□ 0.89
VMP1-209ENST00000588915 RGPD8O14715 1765 aaPredicted RBP20.61■□□□□ 0.89
VMP1-209ENST00000588915 RAB3GAP2Q9H2M9 1393 aa20.6■□□□□ 0.89
VMP1-209ENST00000588915 GLI3P10071 1580 aa20.6■□□□□ 0.89
VMP1-209ENST00000588915 SAFB2Q14151 953 aaKnown RBP eCLIP20.6■□□□□ 0.89
VMP1-209ENST00000588915 EIF3AQ14152 1382 aaKnown RBP20.59■□□□□ 0.89
VMP1-209ENST00000588915 CABLES1Q8TDN4 633 aa20.58■□□□□ 0.89
VMP1-209ENST00000588915 ADGRB2O60241 1585 aa20.58■□□□□ 0.88
VMP1-209ENST00000588915 ADGRB1O14514 1584 aa20.57■□□□□ 0.88
VMP1-209ENST00000588915 HRCP23327 699 aa20.57■□□□□ 0.88
VMP1-209ENST00000588915 BLMP54132 1417 aaPredicted RBP20.57■□□□□ 0.88
VMP1-209ENST00000588915 LMOD2Q6P5Q4 547 aa20.57■□□□□ 0.88
VMP1-209ENST00000588915 SEPT12Q8IYM1 358 aa20.57■□□□□ 0.88
VMP1-209ENST00000588915 PMFBP1Q8TBY8 1022 aa20.57■□□□□ 0.88
VMP1-209ENST00000588915 NWD2Q9ULI1 1742 aa20.56■□□□□ 0.88
VMP1-209ENST00000588915 TRAK1Q9UPV9 953 aa20.55■□□□□ 0.88
VMP1-209ENST00000588915 SRCAPQ6ZRS2 3230 aa20.55■□□□□ 0.88
VMP1-209ENST00000588915 GPRASP1Q5JY77 1395 aa20.54■□□□□ 0.88
VMP1-209ENST00000588915 FAM83GA6ND36 823 aa20.53■□□□□ 0.88
VMP1-209ENST00000588915 WASLO00401 505 aaPredicted RBP20.53■□□□□ 0.88
VMP1-209ENST00000588915 DCAF11Q8TEB1 546 aa20.53■□□□□ 0.88
VMP1-209ENST00000588915 SF3B2Q13435 895 aaKnown RBP20.52■□□□□ 0.88
VMP1-209ENST00000588915 CCDC9Q9Y3X0 531 aaKnown RBP20.52■□□□□ 0.88
VMP1-209ENST00000588915 KRT27Q7Z3Y8 459 aa20.51■□□□□ 0.87
VMP1-209ENST00000588915 KDM2AQ9Y2K7 1162 aa20.51■□□□□ 0.87
VMP1-209ENST00000588915 TULP4Q9NRJ4 1543 aa20.5■□□□□ 0.87
VMP1-209ENST00000588915 HIRIP3Q9BW71 556 aaPredicted RBP20.5■□□□□ 0.87
VMP1-209ENST00000588915 PLCH1Q4KWH8 1693 aa20.5■□□□□ 0.87
VMP1-209ENST00000588915 MINK1Q8N4C8 1332 aaPredicted RBP20.5■□□□□ 0.87
VMP1-209ENST00000588915 PRR36Q9H6K5 1346 aa20.5■□□□□ 0.87
VMP1-209ENST00000588915 ABCA3Q99758 1704 aa20.5■□□□□ 0.87
VMP1-209ENST00000588915 BRWD3Q6RI45 1802 aa20.49■□□□□ 0.87
VMP1-209ENST00000588915 TRPM3Q9HCF6 1732 aaPredicted RBP20.48■□□□□ 0.87
VMP1-209ENST00000588915 PLEKHG5O94827 1062 aa20.48■□□□□ 0.87
VMP1-209ENST00000588915 NGDNQ8NEJ9 315 aaKnown RBP20.48■□□□□ 0.87
VMP1-209ENST00000588915 BTG4Q9NY30 223 aa20.47■□□□□ 0.87
VMP1-209ENST00000588915 ALS2Q96Q42 1657 aa20.46■□□□□ 0.87
VMP1-209ENST00000588915 DEFB132Q7Z7B7 95 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms