RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 FECHP22830 423 aa10.45□□□□□ -0.74
SMCHD1-209ENST00000583441 FUT2Q10981 343 aa10.44□□□□□ -0.74
SMCHD1-209ENST00000583441 SALL2Q9Y467 1007 aaPredicted RBP10.44□□□□□ -0.74
SMCHD1-209ENST00000583441 RDH13Q8NBN7 331 aa10.43□□□□□ -0.74
SMCHD1-209ENST00000583441 OATP04181 439 aa10.42□□□□□ -0.74
SMCHD1-209ENST00000583441 MSS51Q4VC12 460 aa10.42□□□□□ -0.74
SMCHD1-209ENST00000583441 BRICD5Q6PL45 260 aa10.42□□□□□ -0.74
SMCHD1-209ENST00000583441 TMEM151AQ8N4L1 468 aa10.42□□□□□ -0.74
SMCHD1-209ENST00000583441 BMP1P13497 986 aa10.41□□□□□ -0.74
SMCHD1-209ENST00000583441 RC3H1Q5TC82 1133 aaKnown RBP10.41□□□□□ -0.74
SMCHD1-209ENST00000583441 PXYLP1Q8TE99 480 aa10.41□□□□□ -0.74
SMCHD1-209ENST00000583441 NUTM2FA1L443 756 aa10.4□□□□□ -0.74
SMCHD1-209ENST00000583441 ALDH1A1P00352 501 aa10.4□□□□□ -0.74
SMCHD1-209ENST00000583441 TRIM46Q7Z4K8 759 aa10.4□□□□□ -0.74
SMCHD1-209ENST00000583441 MLLT3P42568 568 aaPredicted RBP10.39□□□□□ -0.75
SMCHD1-209ENST00000583441 CAPN5O15484 640 aaPredicted RBP10.38□□□□□ -0.75
SMCHD1-209ENST00000583441 GDF11O95390 407 aa10.38□□□□□ -0.75
SMCHD1-209ENST00000583441 GSK3AP49840 483 aa10.38□□□□□ -0.75
SMCHD1-209ENST00000583441 RASSF7Q02833 373 aa10.35□□□□□ -0.75
SMCHD1-209ENST00000583441 RNF19BQ6ZMZ0 732 aa10.35□□□□□ -0.75
SMCHD1-209ENST00000583441 WNT7BP56706 349 aa10.34□□□□□ -0.75
SMCHD1-209ENST00000583441 DDX11L8A8MPP1 907 aa10.33□□□□□ -0.76
SMCHD1-209ENST00000583441 FCHSD2O94868 740 aa10.33□□□□□ -0.76
SMCHD1-209ENST00000583441 BBXQ8WY36 941 aaPredicted RBP10.33□□□□□ -0.76
SMCHD1-209ENST00000583441 MMP16P51512 607 aa10.32□□□□□ -0.76
SMCHD1-209ENST00000583441 SKOR1P84550 965 aa10.32□□□□□ -0.76
SMCHD1-209ENST00000583441 CCDC24Q8N4L8 307 aa10.32□□□□□ -0.76
SMCHD1-209ENST00000583441 ZFP42Q96MM3 310 aa10.32□□□□□ -0.76
SMCHD1-209ENST00000583441 DAXXQ9UER7 740 aaPredicted RBP10.32□□□□□ -0.76
SMCHD1-209ENST00000583441 WASF2Q9Y6W5 498 aa10.32□□□□□ -0.76
SMCHD1-209ENST00000583441 GCGRP47871 477 aa10.31□□□□□ -0.76
SMCHD1-209ENST00000583441 GRIPAP1Q4V328 841 aa10.31□□□□□ -0.76
SMCHD1-209ENST00000583441 METTL3Q86U44 580 aaKnown RBP10.31□□□□□ -0.76
SMCHD1-209ENST00000583441 RNF225M0QZC1 329 aaPredicted RBP10.3□□□□□ -0.76
SMCHD1-209ENST00000583441 SPRYD3Q8NCJ5 442 aa10.3□□□□□ -0.76
SMCHD1-209ENST00000583441 VSIG8P0DPA2 414 aa10.29□□□□□ -0.76
SMCHD1-209ENST00000583441 Q3C1V9 767 aa10.29□□□□□ -0.76
SMCHD1-209ENST00000583441 DXOO77932 396 aaKnown RBP10.25□□□□□ -0.77
SMCHD1-209ENST00000583441 SULF1Q8IWU6 871 aa10.25□□□□□ -0.77
SMCHD1-209ENST00000583441 XP32Q5T750 250 aa10.24□□□□□ -0.77
SMCHD1-209ENST00000583441 EHBP1Q8NDI1 1231 aa10.24□□□□□ -0.77
SMCHD1-209ENST00000583441 SIAH2O43255 324 aa10.23□□□□□ -0.77
SMCHD1-209ENST00000583441 SCARF1Q14162 830 aa10.23□□□□□ -0.77
SMCHD1-209ENST00000583441 GPAT2Q6NUI2 795 aa10.23□□□□□ -0.77
SMCHD1-209ENST00000583441 USB1Q9BQ65 265 aaKnown RBP10.23□□□□□ -0.77
SMCHD1-209ENST00000583441 IGHA1P01876 353 aa10.21□□□□□ -0.77
SMCHD1-209ENST00000583441 ARHGEF1Q92888 912 aaKnown RBP10.21□□□□□ -0.77
SMCHD1-209ENST00000583441 ADAMTS8Q9UP79 889 aa10.21□□□□□ -0.77
SMCHD1-209ENST00000583441 SOBPA7XYQ1 873 aa10.19□□□□□ -0.78
SMCHD1-209ENST00000583441 HIC1Q14526 733 aa10.18□□□□□ -0.78
SMCHD1-209ENST00000583441 MRPL14Q6P1L8 145 aaKnown RBP10.18□□□□□ -0.78
SMCHD1-209ENST00000583441 PURBQ96QR8 312 aaKnown RBP10.18□□□□□ -0.78
SMCHD1-209ENST00000583441 NLRP7Q8WX94 980 aa10.16□□□□□ -0.78
SMCHD1-209ENST00000583441 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.16□□□□□ -0.78
SMCHD1-209ENST00000583441 DNMT3AQ9Y6K1 912 aaPredicted RBP10.16□□□□□ -0.78
SMCHD1-209ENST00000583441 MAN1A2O60476 641 aa10.12□□□□□ -0.79
SMCHD1-209ENST00000583441 PPFIA3O75145 1194 aa10.12□□□□□ -0.79
SMCHD1-209ENST00000583441 FOXK2Q01167 660 aa10.11□□□□□ -0.79
SMCHD1-209ENST00000583441 IRS1P35568 1242 aa10.1□□□□□ -0.79
SMCHD1-209ENST00000583441 CNTNAP3BQ96NU0 1288 aa10.09□□□□□ -0.79
SMCHD1-209ENST00000583441 CNTNAP3Q9BZ76 1288 aa10.09□□□□□ -0.79
SMCHD1-209ENST00000583441 PLEKHG3A1L390 1219 aa10.08□□□□□ -0.8
SMCHD1-209ENST00000583441 NNTQ13423 1086 aa10.08□□□□□ -0.8
SMCHD1-209ENST00000583441 CFAP44Q96MT7 982 aa10.08□□□□□ -0.8
SMCHD1-209ENST00000583441 JUNDP17535 347 aa10.07□□□□□ -0.8
SMCHD1-209ENST00000583441 SH3BP2P78314 561 aa10.07□□□□□ -0.8
SMCHD1-209ENST00000583441 KRTAP4-8Q9BYQ9 185 aa10.07□□□□□ -0.8
SMCHD1-209ENST00000583441 WDR4P57081 412 aaKnown RBP10.06□□□□□ -0.8
SMCHD1-209ENST00000583441 PTCRAQ6ISU1 281 aaPredicted RBP10.06□□□□□ -0.8
SMCHD1-209ENST00000583441 NUDT12Q9BQG2 462 aa10.06□□□□□ -0.8
SMCHD1-209ENST00000583441 GNPATO15228 680 aa10.05□□□□□ -0.8
SMCHD1-209ENST00000583441 ADH1CP00326 375 aa10.05□□□□□ -0.8
SMCHD1-209ENST00000583441 TIMP2P16035 220 aa10.05□□□□□ -0.8
SMCHD1-209ENST00000583441 KANK3Q6NY19 840 aa10.05□□□□□ -0.8
SMCHD1-209ENST00000583441 SVOPQ8N4V2 548 aa10.05□□□□□ -0.8
SMCHD1-209ENST00000583441 TLL2Q9Y6L7 1015 aa10.05□□□□□ -0.8
SMCHD1-209ENST00000583441 KDM4AO75164 1064 aa10.04□□□□□ -0.8
SMCHD1-209ENST00000583441 KRT76Q01546 638 aa10.04□□□□□ -0.8
SMCHD1-209ENST00000583441 PAXIP1Q6ZW49 1069 aaPredicted RBP10.04□□□□□ -0.8
SMCHD1-209ENST00000583441 MARSP56192 900 aaKnown RBP10.03□□□□□ -0.8
SMCHD1-209ENST00000583441 KCNV2Q8TDN2 545 aa10.03□□□□□ -0.8
SMCHD1-209ENST00000583441 C6orf118Q5T5N4 469 aa10.02□□□□□ -0.81
SMCHD1-209ENST00000583441 ZNF385CQ66K41 422 aaPredicted RBP10.02□□□□□ -0.81
SMCHD1-209ENST00000583441 GPR161Q8N6U8 529 aaKnown RBP10.01□□□□□ -0.81
SMCHD1-209ENST00000583441 ADAM23O75077 832 aa10□□□□□ -0.81
SMCHD1-209ENST00000583441 PHOX2BQ99453 314 aa10□□□□□ -0.81
SMCHD1-209ENST00000583441 CD46P15529 392 aa9.99□□□□□ -0.81
SMCHD1-209ENST00000583441 USP46P62068 366 aa9.99□□□□□ -0.81
SMCHD1-209ENST00000583441 HLA-CQ95604 372 aa9.99□□□□□ -0.81
SMCHD1-209ENST00000583441 VARSP26640 1264 aaKnown RBP9.98□□□□□ -0.81
SMCHD1-209ENST00000583441 MPNDQ8N594 471 aa9.98□□□□□ -0.81
SMCHD1-209ENST00000583441 SCARF2Q96GP6 870 aaPredicted RBP9.98□□□□□ -0.81
SMCHD1-209ENST00000583441 COL25A1Q9BXS0 654 aaPredicted RBP9.98□□□□□ -0.81
SMCHD1-209ENST00000583441 LINC01559Q495D7 138 aa9.97□□□□□ -0.81
SMCHD1-209ENST00000583441 UPP2O95045 317 aa9.96□□□□□ -0.82
SMCHD1-209ENST00000583441 BMP2P12643 396 aa9.96□□□□□ -0.82
SMCHD1-209ENST00000583441 MSTNO14793 375 aa9.95□□□□□ -0.82
SMCHD1-209ENST00000583441 SEMA3EO15041 775 aa9.95□□□□□ -0.82
SMCHD1-209ENST00000583441 BAP1Q92560 729 aa9.95□□□□□ -0.82
SMCHD1-209ENST00000583441 SYMPKQ92797 1274 aaKnown RBP9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms