RNA–Protein interactions for RNA: ENST00000579329.1

LIMD2-207, Transcript of LIM domain containing 2, humanhuman

TSL 1 (best)

Gene LIMD2, Length 920 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2-207ENST00000579329 NEUROD1Q13562 356 aa34.59■■■■□ 3.13
LIMD2-207ENST00000579329 DLC1Q96QB1 1528 aa34.59■■■■□ 3.13
LIMD2-207ENST00000579329 PLEKHH1Q9ULM0 1364 aa34.59■■■■□ 3.13
LIMD2-207ENST00000579329 CDC42BPGQ6DT37 1551 aa34.58■■■■□ 3.13
LIMD2-207ENST00000579329 BRINP3Q76B58 766 aa34.56■■■■□ 3.12
LIMD2-207ENST00000579329 COL16A1Q07092 1604 aaPredicted RBP34.55■■■■□ 3.12
LIMD2-207ENST00000579329 JCADQ9P266 1359 aa34.55■■■■□ 3.12
LIMD2-207ENST00000579329 L3MBTL2Q969R5 705 aa34.55■■■■□ 3.12
LIMD2-207ENST00000579329 KIAA1210Q9ULL0 1709 aa34.55■■■■□ 3.12
LIMD2-207ENST00000579329 C1orf167Q5SNV9 1468 aa34.53■■■■□ 3.12
LIMD2-207ENST00000579329 AHDC1Q5TGY3 1603 aaPredicted RBP34.53■■■■□ 3.12
LIMD2-207ENST00000579329 PRAM1Q96QH2 718 aa34.5■■■■□ 3.11
LIMD2-207ENST00000579329 TRAK1Q9UPV9 953 aa34.5■■■■□ 3.11
LIMD2-207ENST00000579329 POGKQ9P215 609 aa34.48■■■■□ 3.11
LIMD2-207ENST00000579329 PCGF6Q9BYE7 350 aa34.47■■■■□ 3.11
LIMD2-207ENST00000579329 SAFB2Q14151 953 aaKnown RBP eCLIP34.44■■■■□ 3.1
LIMD2-207ENST00000579329 NHSL1Q5SYE7 1610 aa34.44■■■■□ 3.1
LIMD2-207ENST00000579329 LRP6O75581 1613 aa34.43■■■■□ 3.1
LIMD2-207ENST00000579329 FMN2Q9NZ56 1722 aa34.42■■■■□ 3.1
LIMD2-207ENST00000579329 ARHGEF28Q8N1W1 1705 aaKnown RBP34.4■■■■□ 3.1
LIMD2-207ENST00000579329 SHPRHQ149N8 1683 aa34.39■■■■□ 3.1
LIMD2-207ENST00000579329 ORAI2Q96SN7 254 aa34.39■■■■□ 3.1
LIMD2-207ENST00000579329 ADGRB2O60241 1585 aa34.38■■■■□ 3.09
LIMD2-207ENST00000579329 NBPF1Q3BBV0 1214 aa34.38■■■■□ 3.09
LIMD2-207ENST00000579329 TONSLQ96HA7 1378 aa34.37■■■■□ 3.09
LIMD2-207ENST00000579329 SPATA31A6Q5VVP1 1343 aa34.35■■■■□ 3.09
LIMD2-207ENST00000579329 NUTM2FA1L443 756 aa34.35■■■■□ 3.09
LIMD2-207ENST00000579329 ESCO1Q5FWF5 840 aa34.34■■■■□ 3.09
LIMD2-207ENST00000579329 TRPM1Q7Z4N2 1603 aa34.33■■■■□ 3.09
LIMD2-207ENST00000579329 MEX3CQ5U5Q3 659 aaKnown RBP34.33■■■■□ 3.09
LIMD2-207ENST00000579329 DDX17Q92841 729 aaKnown RBP34.32■■■■□ 3.08
LIMD2-207ENST00000579329 MINK1Q8N4C8 1332 aaPredicted RBP34.31■■■■□ 3.08
LIMD2-207ENST00000579329 HIRIP3Q9BW71 556 aaPredicted RBP34.28■■■■□ 3.08
LIMD2-207ENST00000579329 LRRC59Q96AG4 307 aaKnown RBP34.27■■■■□ 3.08
LIMD2-207ENST00000579329 ANKARQ7Z5J8 1434 aa34.27■■■■□ 3.08
LIMD2-207ENST00000579329 EIF3AQ14152 1382 aaKnown RBP34.26■■■■□ 3.08
LIMD2-207ENST00000579329 KIF1AQ12756 1690 aa34.26■■■■□ 3.08
LIMD2-207ENST00000579329 ZNF772Q68DY9 489 aaPredicted RBP34.26■■■■□ 3.08
LIMD2-207ENST00000579329 NPHP3Q7Z494 1330 aa34.26■■■■□ 3.07
LIMD2-207ENST00000579329 SOS2Q07890 1332 aaPredicted RBP34.25■■■■□ 3.07
LIMD2-207ENST00000579329 ROCK2O75116 1388 aaKnown RBP34.24■■■■□ 3.07
LIMD2-207ENST00000579329 NBPF8Q3BBV2 869 aa34.23■■■■□ 3.07
LIMD2-207ENST00000579329 WASLO00401 505 aaPredicted RBP34.22■■■■□ 3.07
LIMD2-207ENST00000579329 TULP4Q9NRJ4 1543 aa34.21■■■■□ 3.07
LIMD2-207ENST00000579329 RGPD8O14715 1765 aaPredicted RBP34.21■■■■□ 3.07
LIMD2-207ENST00000579329 USP32Q8NFA0 1604 aa34.2■■■■□ 3.07
LIMD2-207ENST00000579329 CLSPNQ9HAW4 1339 aa34.2■■■■□ 3.07
LIMD2-207ENST00000579329 FOXO3O43524 673 aa34.19■■■■□ 3.06
LIMD2-207ENST00000579329 UPF1Q92900 1129 aaKnown RBP eCLIP34.18■■■■□ 3.062e-6■■□□□ 12.9
LIMD2-207ENST00000579329 PHF8Q9UPP1 1060 aa34.18■■■■□ 3.06
LIMD2-207ENST00000579329 CENPJQ9HC77 1338 aaPredicted RBP34.18■■■■□ 3.06
LIMD2-207ENST00000579329 PNPLA6Q8IY17 1366 aa34.17■■■■□ 3.06
LIMD2-207ENST00000579329 PXDNQ92626 1479 aa34.17■■■■□ 3.06
LIMD2-207ENST00000579329 GPRASP1Q5JY77 1395 aa34.16■■■■□ 3.06
LIMD2-207ENST00000579329 NUTM2BA6NNL0 878 aaPredicted RBP34.16■■■■□ 3.06
LIMD2-207ENST00000579329 NUTM2EB1AL46 878 aaPredicted RBP34.16■■■■□ 3.06
LIMD2-207ENST00000579329 NUTM2AQ8IVF1 878 aaPredicted RBP34.16■■■■□ 3.06
LIMD2-207ENST00000579329 RALGAPBQ86X10 1494 aa34.14■■■■□ 3.06
LIMD2-207ENST00000579329 PRR36Q9H6K5 1346 aa34.13■■■■□ 3.05
LIMD2-207ENST00000579329 QRICH2Q9H0J4 1663 aa34.12■■■■□ 3.05
LIMD2-207ENST00000579329 RXRBP28702 533 aa34.11■■■■□ 3.05
LIMD2-207ENST00000579329 XPCQ01831 940 aaPredicted RBP34.11■■■■□ 3.05
LIMD2-207ENST00000579329 CDK19Q9BWU1 502 aa34.09■■■■□ 3.05
LIMD2-207ENST00000579329 ATP7BP35670 1465 aa34.08■■■■□ 3.05
LIMD2-207ENST00000579329 CARD11Q9BXL7 1154 aa34.07■■■■□ 3.04
LIMD2-207ENST00000579329 ITSN1Q15811 1721 aa34.07■■■■□ 3.04
LIMD2-207ENST00000579329 AFF2P51816 1311 aa34.06■■■■□ 3.04
LIMD2-207ENST00000579329 KRT28Q7Z3Y7 464 aa34.06■■■■□ 3.04
LIMD2-207ENST00000579329 PMFBP1Q8TBY8 1022 aa34.06■■■■□ 3.04
LIMD2-207ENST00000579329 NUDT16Q96DE0 195 aaKnown RBP34.05■■■■□ 3.04
LIMD2-207ENST00000579329 CDK12Q9NYV4 1490 aaPredicted RBP34.05■■■■□ 3.04
LIMD2-207ENST00000579329 COL22A1Q8NFW1 1626 aaPredicted RBP34.04■■■■□ 3.04
LIMD2-207ENST00000579329 PSME1Q06323 249 aa34.03■■■■□ 3.04
LIMD2-207ENST00000579329 CCER1Q8TC90 406 aaPredicted RBP34.03■■■■□ 3.04
LIMD2-207ENST00000579329 TIMELESSQ9UNS1 1208 aa34.03■■■■□ 3.04
LIMD2-207ENST00000579329 SPATA31A3Q5VYP0 1347 aa34.01■■■■□ 3.03
LIMD2-207ENST00000579329 TOPAZ1Q8N9V7 1692 aa33.99■■■■□ 3.03
LIMD2-207ENST00000579329 SBNO1A3KN83 1393 aa33.98■■■■□ 3.03
LIMD2-207ENST00000579329 TNS3Q68CZ2 1445 aa33.98■■■■□ 3.03
LIMD2-207ENST00000579329 SRPK2P78362 688 aaKnown RBP33.98■■■■□ 3.03
LIMD2-207ENST00000579329 NGDNQ8NEJ9 315 aaKnown RBP33.97■■■■□ 3.03
LIMD2-207ENST00000579329 CCDC61Q9Y6R9 512 aa33.97■■■■□ 3.03
LIMD2-207ENST00000579329 C8orf37Q96NL8 207 aa33.95■■■■□ 3.03
LIMD2-207ENST00000579329 EVC2Q86UK5 1308 aa33.95■■■■□ 3.03
LIMD2-207ENST00000579329 CABP2Q9NPB3 220 aa33.93■■■■□ 3.02
LIMD2-207ENST00000579329 SBNO2Q9Y2G9 1366 aa33.92■■■■□ 3.02
LIMD2-207ENST00000579329 RGS12O14924 1447 aa33.92■■■■□ 3.02
LIMD2-207ENST00000579329 TRPM3Q9HCF6 1732 aaPredicted RBP33.91■■■■□ 3.02
LIMD2-207ENST00000579329 ARHGEF10O15013 1369 aa33.9■■■■□ 3.02
LIMD2-207ENST00000579329 PLEKHG3A1L390 1219 aa33.89■■■■□ 3.02
LIMD2-207ENST00000579329 ADAMTS2O95450 1211 aa33.89■■■■□ 3.02
LIMD2-207ENST00000579329 QTRT2Q9H974 415 aaKnown RBP33.89■■■■□ 3.02
LIMD2-207ENST00000579329 POLR3AO14802 1390 aaPredicted RBP33.88■■■■□ 3.01
LIMD2-207ENST00000579329 PPIP5K1Q6PFW1 1433 aa33.87■■■■□ 3.01
LIMD2-207ENST00000579329 RBM6P78332 1123 aaKnown RBP33.86■■■■□ 3.01
LIMD2-207ENST00000579329 LMOD2Q6P5Q4 547 aa33.86■■■■□ 3.01
LIMD2-207ENST00000579329 ACEP12821 1306 aa33.85■■■■□ 3.01
LIMD2-207ENST00000579329 ALS2Q96Q42 1657 aa33.84■■■■□ 3.01
LIMD2-207ENST00000579329 NGLY1Q96IV0 654 aa33.8■■■■□ 3
LIMD2-207ENST00000579329 MARF1Q9Y4F3 1742 aaKnown RBP33.79■■■■□ 3
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms