RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 WAPLQ7Z5K2 1190 aa21.59■■□□□ 1.05
SS18-212ENST00000579061 TRIM26Q12899 539 aaPredicted RBP21.58■■□□□ 1.05
SS18-212ENST00000579061 ILDR2Q71H61 639 aa21.57■■□□□ 1.04
SS18-212ENST00000579061 PLEKHH1Q9ULM0 1364 aa21.57■■□□□ 1.04
SS18-212ENST00000579061 SHPRHQ149N8 1683 aa21.56■■□□□ 1.04
SS18-212ENST00000579061 PHF23Q9BUL5 403 aaPredicted RBP21.55■■□□□ 1.04
SS18-212ENST00000579061 KIAA1210Q9ULL0 1709 aa21.54■■□□□ 1.04
SS18-212ENST00000579061 SPATA31A6Q5VVP1 1343 aa21.54■■□□□ 1.04
SS18-212ENST00000579061 FMN2Q9NZ56 1722 aa21.53■■□□□ 1.04
SS18-212ENST00000579061 LRRC59Q96AG4 307 aaKnown RBP21.52■■□□□ 1.04
SS18-212ENST00000579061 ORAI2Q96SN7 254 aa21.52■■□□□ 1.04
SS18-212ENST00000579061 PRAM1Q96QH2 718 aa21.5■■□□□ 1.03
SS18-212ENST00000579061 POGKQ9P215 609 aa21.49■■□□□ 1.03
SS18-212ENST00000579061 SOS2Q07890 1332 aaPredicted RBP21.48■■□□□ 1.03
SS18-212ENST00000579061 ADGRB2O60241 1585 aa21.48■■□□□ 1.03
SS18-212ENST00000579061 ESCO1Q5FWF5 840 aa21.47■■□□□ 1.03
SS18-212ENST00000579061 DDX17Q92841 729 aaKnown RBP21.47■■□□□ 1.03
SS18-212ENST00000579061 TRAK1Q9UPV9 953 aa21.47■■□□□ 1.03
SS18-212ENST00000579061 SIN3AQ96ST3 1273 aa21.45■■□□□ 1.02
SS18-212ENST00000579061 ARHGEF28Q8N1W1 1705 aaKnown RBP21.45■■□□□ 1.02
SS18-212ENST00000579061 NPHP3Q7Z494 1330 aa21.45■■□□□ 1.02
SS18-212ENST00000579061 KIF1AQ12756 1690 aa21.44■■□□□ 1.02
SS18-212ENST00000579061 SAFB2Q14151 953 aaKnown RBP eCLIP21.44■■□□□ 1.02
SS18-212ENST00000579061 RGS17Q9UGC6 210 aaPredicted RBP21.44■■□□□ 1.02
SS18-212ENST00000579061 LRP6O75581 1613 aa21.44■■□□□ 1.02
SS18-212ENST00000579061 RGPD8O14715 1765 aaPredicted RBP21.43■■□□□ 1.02
SS18-212ENST00000579061 L3MBTL2Q969R5 705 aa21.43■■□□□ 1.02
SS18-212ENST00000579061 PNPLA6Q8IY17 1366 aa21.43■■□□□ 1.02
SS18-212ENST00000579061 NUTM2FA1L443 756 aa21.42■■□□□ 1.02
SS18-212ENST00000579061 ANKARQ7Z5J8 1434 aa21.4■■□□□ 1.02
SS18-212ENST00000579061 SOCS7O14512 581 aa21.4■■□□□ 1.02
SS18-212ENST00000579061 PXDNQ92626 1479 aa21.39■■□□□ 1.02
SS18-212ENST00000579061 EIF3AQ14152 1382 aaKnown RBP21.39■■□□□ 1.02
SS18-212ENST00000579061 FOXO3O43524 673 aa21.39■■□□□ 1.01
SS18-212ENST00000579061 NEUROD1Q13562 356 aa21.39■■□□□ 1.01
SS18-212ENST00000579061 USP32Q8NFA0 1604 aa21.37■■□□□ 1.01
SS18-212ENST00000579061 COL22A1Q8NFW1 1626 aaPredicted RBP21.37■■□□□ 1.01
SS18-212ENST00000579061 MINK1Q8N4C8 1332 aaPredicted RBP21.37■■□□□ 1.01
SS18-212ENST00000579061 NBPF1Q3BBV0 1214 aa21.37■■□□□ 1.01
SS18-212ENST00000579061 MEX3CQ5U5Q3 659 aaKnown RBP21.37■■□□□ 1.01
SS18-212ENST00000579061 PHF8Q9UPP1 1060 aa21.36■■□□□ 1.01
SS18-212ENST00000579061 NUTM2BA6NNL0 878 aaPredicted RBP21.35■■□□□ 1.01
SS18-212ENST00000579061 NUTM2EB1AL46 878 aaPredicted RBP21.35■■□□□ 1.01
SS18-212ENST00000579061 WASLO00401 505 aaPredicted RBP21.35■■□□□ 1.01
SS18-212ENST00000579061 NUTM2AQ8IVF1 878 aaPredicted RBP21.35■■□□□ 1.01
SS18-212ENST00000579061 HIRIP3Q9BW71 556 aaPredicted RBP21.35■■□□□ 1.01
SS18-212ENST00000579061 TULP4Q9NRJ4 1543 aa21.34■■□□□ 1.01
SS18-212ENST00000579061 TRPM1Q7Z4N2 1603 aa21.34■■□□□ 1.01
SS18-212ENST00000579061 POTEAQ6S8J7 498 aa21.33■■□□□ 1.01
SS18-212ENST00000579061 ZNF772Q68DY9 489 aaPredicted RBP21.32■■□□□ 1
SS18-212ENST00000579061 XPCQ01831 940 aaPredicted RBP21.31■■□□□ 1
SS18-212ENST00000579061 KRT28Q7Z3Y7 464 aa21.31■■□□□ 1
SS18-212ENST00000579061 ITSN1Q15811 1721 aa21.3■■□□□ 1
SS18-212ENST00000579061 PSME1Q06323 249 aa21.3■■□□□ 1
SS18-212ENST00000579061 SPATA31A3Q5VYP0 1347 aa21.29■■□□□ 1
SS18-212ENST00000579061 PRR36Q9H6K5 1346 aa21.29■■□□□ 1
SS18-212ENST00000579061 SBNO1A3KN83 1393 aa21.28■■□□□ 1
SS18-212ENST00000579061 CENPJQ9HC77 1338 aaPredicted RBP21.28■■□□□ 1
SS18-212ENST00000579061 TONSLQ96HA7 1378 aa21.27■■□□□ 1
SS18-212ENST00000579061 ATP7BP35670 1465 aa21.26■□□□□ 0.99
SS18-212ENST00000579061 PMFBP1Q8TBY8 1022 aa21.26■□□□□ 0.99
SS18-212ENST00000579061 TNS3Q68CZ2 1445 aa21.26■□□□□ 0.99
SS18-212ENST00000579061 AFF2P51816 1311 aa21.26■□□□□ 0.99
SS18-212ENST00000579061 ROCK2O75116 1388 aaKnown RBP21.25■□□□□ 0.99
SS18-212ENST00000579061 CDK19Q9BWU1 502 aa21.25■□□□□ 0.99
SS18-212ENST00000579061 MARF1Q9Y4F3 1742 aaKnown RBP21.25■□□□□ 0.99
SS18-212ENST00000579061 QRICH2Q9H0J4 1663 aa21.24■□□□□ 0.99
SS18-212ENST00000579061 NUDT16Q96DE0 195 aaKnown RBP21.24■□□□□ 0.99
SS18-212ENST00000579061 C8orf37Q96NL8 207 aa21.24■□□□□ 0.99
SS18-212ENST00000579061 GPRASP1Q5JY77 1395 aa21.23■□□□□ 0.99
SS18-212ENST00000579061 ADAMTS2O95450 1211 aa21.23■□□□□ 0.99
SS18-212ENST00000579061 NBPF8Q3BBV2 869 aa21.23■□□□□ 0.99
SS18-212ENST00000579061 TRPM3Q9HCF6 1732 aaPredicted RBP21.23■□□□□ 0.99
SS18-212ENST00000579061 ARHGEF10O15013 1369 aa21.23■□□□□ 0.99
SS18-212ENST00000579061 TOPAZ1Q8N9V7 1692 aa21.22■□□□□ 0.99
SS18-212ENST00000579061 NGLY1Q96IV0 654 aa21.21■□□□□ 0.99
SS18-212ENST00000579061 NGDNQ8NEJ9 315 aaKnown RBP21.2■□□□□ 0.98
SS18-212ENST00000579061 CCDC61Q9Y6R9 512 aa21.2■□□□□ 0.98
SS18-212ENST00000579061 FNBP4Q8N3X1 1017 aaPredicted RBP21.19■□□□□ 0.98
SS18-212ENST00000579061 ALS2Q96Q42 1657 aa21.18■□□□□ 0.98
SS18-212ENST00000579061 RALGAPBQ86X10 1494 aa21.18■□□□□ 0.98
SS18-212ENST00000579061 PLEKHG3A1L390 1219 aa21.17■□□□□ 0.98
SS18-212ENST00000579061 POLR3AO14802 1390 aaPredicted RBP21.17■□□□□ 0.98
SS18-212ENST00000579061 CDK12Q9NYV4 1490 aaPredicted RBP21.16■□□□□ 0.98
SS18-212ENST00000579061 RXRBP28702 533 aa21.16■□□□□ 0.98
SS18-212ENST00000579061 ABCA3Q99758 1704 aa21.15■□□□□ 0.98
SS18-212ENST00000579061 CLSPNQ9HAW4 1339 aa21.15■□□□□ 0.98
SS18-212ENST00000579061 SRPK2P78362 688 aaKnown RBP21.15■□□□□ 0.98
SS18-212ENST00000579061 QTRT2Q9H974 415 aaKnown RBP21.15■□□□□ 0.98
SS18-212ENST00000579061 EVC2Q86UK5 1308 aa21.14■□□□□ 0.97
SS18-212ENST00000579061 LMOD2Q6P5Q4 547 aa21.14■□□□□ 0.97
SS18-212ENST00000579061 USP21Q9UK80 565 aa21.14■□□□□ 0.97
SS18-212ENST00000579061 CARD11Q9BXL7 1154 aa21.13■□□□□ 0.97
SS18-212ENST00000579061 SBNO2Q9Y2G9 1366 aa21.12■□□□□ 0.97
SS18-212ENST00000579061 ACEP12821 1306 aa21.12■□□□□ 0.97
SS18-212ENST00000579061 RBM6P78332 1123 aaKnown RBP21.12■□□□□ 0.97
SS18-212ENST00000579061 PCGF6Q9BYE7 350 aa21.12■□□□□ 0.97
SS18-212ENST00000579061 CABP2Q9NPB3 220 aa21.12■□□□□ 0.97
SS18-212ENST00000579061 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.12■□□□□ 0.97
SS18-212ENST00000579061 HAP1P54257 671 aaPredicted RBP21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms