RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 DDX10Q13206 875 aaKnown RBP33.45■■■□□ 2.95
ATPAF1-213ENST00000574428 SLC24A1O60721 1099 aa33.43■■■□□ 2.94
ATPAF1-213ENST00000574428 TULP4Q9NRJ4 1543 aa33.43■■■□□ 2.94
ATPAF1-213ENST00000574428 NWD1Q149M9 1564 aa33.41■■■□□ 2.94
ATPAF1-213ENST00000574428 DIEXFQ68CQ4 756 aaKnown RBP33.38■■■□□ 2.93
ATPAF1-213ENST00000574428 CDCA8Q53HL2 280 aa33.37■■■□□ 2.93
ATPAF1-213ENST00000574428 EVC2Q86UK5 1308 aa33.37■■■□□ 2.93
ATPAF1-213ENST00000574428 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.36■■■□□ 2.93
ATPAF1-213ENST00000574428 STRCP1A6NGW2 1772 aa33.31■■■□□ 2.92
ATPAF1-213ENST00000574428 ADGRB2O60241 1585 aa33.29■■■□□ 2.92
ATPAF1-213ENST00000574428 NKTRP30414 1462 aaKnown RBP33.29■■■□□ 2.92
ATPAF1-213ENST00000574428 AEBP2Q6ZN18 517 aaPredicted RBP33.29■■■□□ 2.92
ATPAF1-213ENST00000574428 CABP2Q9NPB3 220 aa33.29■■■□□ 2.92
ATPAF1-213ENST00000574428 SRPK2P78362 688 aaKnown RBP33.28■■■□□ 2.92
ATPAF1-213ENST00000574428 RBM33Q96EV2 1170 aaKnown RBP33.28■■■□□ 2.92
ATPAF1-213ENST00000574428 CDK19Q9BWU1 502 aa33.28■■■□□ 2.92
ATPAF1-213ENST00000574428 MYOM1P52179 1685 aa33.28■■■□□ 2.92
ATPAF1-213ENST00000574428 DMRT2Q9Y5R5 561 aa33.26■■■□□ 2.92
ATPAF1-213ENST00000574428 WASLO00401 505 aaPredicted RBP33.25■■■□□ 2.91
ATPAF1-213ENST00000574428 NALCNQ8IZF0 1738 aa33.23■■■□□ 2.91
ATPAF1-213ENST00000574428 PROSER2Q86WR7 435 aaPredicted RBP33.22■■■□□ 2.91
ATPAF1-213ENST00000574428 PUS7Q96PZ0 661 aaKnown RBP33.22■■■□□ 2.91
ATPAF1-213ENST00000574428 ZNF335Q9H4Z2 1342 aaPredicted RBP33.21■■■□□ 2.91
ATPAF1-213ENST00000574428 ATAD2Q6PL18 1390 aa33.17■■■□□ 2.9
ATPAF1-213ENST00000574428 ADGRL3Q9HAR2 1447 aa33.17■■■□□ 2.9
ATPAF1-213ENST00000574428 TMC1Q8TDI8 760 aa33.16■■■□□ 2.9
ATPAF1-213ENST00000574428 C14orf37Q86TY3 774 aa33.15■■■□□ 2.9
ATPAF1-213ENST00000574428 SLC12A5Q9H2X9 1139 aa33.14■■■□□ 2.9
ATPAF1-213ENST00000574428 PANK3Q9H999 370 aa33.14■■■□□ 2.9
ATPAF1-213ENST00000574428 TMEM94Q12767 1356 aa33.13■■■□□ 2.89
ATPAF1-213ENST00000574428 CDC42BPGQ6DT37 1551 aa33.13■■■□□ 2.89
ATPAF1-213ENST00000574428 ATP7BP35670 1465 aa33.11■■■□□ 2.89
ATPAF1-213ENST00000574428 NUTM2FA1L443 756 aa33.11■■■□□ 2.89
ATPAF1-213ENST00000574428 PRR36Q9H6K5 1346 aa33.1■■■□□ 2.89
ATPAF1-213ENST00000574428 NUDT16Q96DE0 195 aaKnown RBP33.1■■■□□ 2.89
ATPAF1-213ENST00000574428 FMN2Q9NZ56 1722 aa33.09■■■□□ 2.89
ATPAF1-213ENST00000574428 USP32Q8NFA0 1604 aa33.08■■■□□ 2.89
ATPAF1-213ENST00000574428 NINLQ9Y2I6 1382 aa33.08■■■□□ 2.89
ATPAF1-213ENST00000574428 LRRC7Q96NW7 1537 aa33.07■■■□□ 2.88
ATPAF1-213ENST00000574428 CABP1Q9NZU7 370 aa33.06■■■□□ 2.88
ATPAF1-213ENST00000574428 PPIP5K1Q6PFW1 1433 aa33.05■■■□□ 2.88
ATPAF1-213ENST00000574428 NCOA3Q9Y6Q9 1424 aa33.04■■■□□ 2.88
ATPAF1-213ENST00000574428 XIRP1Q702N8 1843 aaKnown RBP33.04■■■□□ 2.88
ATPAF1-213ENST00000574428 TOPAZ1Q8N9V7 1692 aa33.04■■■□□ 2.88
ATPAF1-213ENST00000574428 CCDC61Q9Y6R9 512 aa33.03■■■□□ 2.88
ATPAF1-213ENST00000574428 PER1O15534 1290 aaPredicted RBP33.01■■■□□ 2.88
ATPAF1-213ENST00000574428 ANKRD36BQ8N2N9 1353 aa33.01■■■□□ 2.87
ATPAF1-213ENST00000574428 C19orf44Q9H6X5 657 aa33.01■■■□□ 2.87
ATPAF1-213ENST00000574428 ANKARQ7Z5J8 1434 aa33■■■□□ 2.87
ATPAF1-213ENST00000574428 CD163L1Q9NR16 1453 aa33■■■□□ 2.87
ATPAF1-213ENST00000574428 RGPD8O14715 1765 aaPredicted RBP33■■■□□ 2.87
ATPAF1-213ENST00000574428 CARD14Q9BXL6 1004 aa32.99■■■□□ 2.87
ATPAF1-213ENST00000574428 MIER1Q8N108 512 aa32.98■■■□□ 2.87
ATPAF1-213ENST00000574428 A0A1W2PP64 1363 aa32.98■■■□□ 2.87
ATPAF1-213ENST00000574428 ITSN1Q15811 1721 aa32.98■■■□□ 2.87
ATPAF1-213ENST00000574428 CNGB1Q14028 1251 aaPredicted RBP32.96■■■□□ 2.87
ATPAF1-213ENST00000574428 TERF2IPQ9NYB0 399 aa32.96■■■□□ 2.87
ATPAF1-213ENST00000574428 ANP32CO43423 234 aa32.95■■■□□ 2.87
ATPAF1-213ENST00000574428 KNSTRNQ9Y448 316 aa32.95■■■□□ 2.87
ATPAF1-213ENST00000574428 NSD3Q9BZ95 1437 aa32.94■■■□□ 2.86
ATPAF1-213ENST00000574428 MSH6P52701 1360 aa32.94■■■□□ 2.86
ATPAF1-213ENST00000574428 DCCP43146 1447 aa32.94■■■□□ 2.86
ATPAF1-213ENST00000574428 HDGFL2Q7Z4V5 671 aaPredicted RBP32.92■■■□□ 2.86
ATPAF1-213ENST00000574428 LTBP4Q8N2S1 1624 aa32.92■■■□□ 2.86
ATPAF1-213ENST00000574428 ATF3P18847 181 aa32.91■■■□□ 2.86
ATPAF1-213ENST00000574428 CPSF1Q10570 1443 aaKnown RBP32.89■■■□□ 2.86
ATPAF1-213ENST00000574428 PLEKHG3A1L390 1219 aa32.89■■■□□ 2.86
ATPAF1-213ENST00000574428 PMFBP1Q8TBY8 1022 aa32.88■■■□□ 2.85
ATPAF1-213ENST00000574428 AKAP12Q02952 1782 aa32.87■■■□□ 2.85
ATPAF1-213ENST00000574428 ACEP12821 1306 aa32.87■■■□□ 2.85
ATPAF1-213ENST00000574428 KTN1Q86UP2 1357 aaKnown RBP32.86■■■□□ 2.85
ATPAF1-213ENST00000574428 AMER1Q5JTC6 1135 aaPredicted RBP32.86■■■□□ 2.85
ATPAF1-213ENST00000574428 CC2D1BQ5T0F9 858 aaKnown RBP32.86■■■□□ 2.85
ATPAF1-213ENST00000574428 CADPS2Q86UW7 1296 aa32.86■■■□□ 2.85
ATPAF1-213ENST00000574428 PRKRIP1Q9H875 184 aaPredicted RBP32.86■■■□□ 2.85
ATPAF1-213ENST00000574428 MST1RQ04912 1400 aa32.85■■■□□ 2.85
ATPAF1-213ENST00000574428 C1orf167Q5SNV9 1468 aa32.85■■■□□ 2.85
ATPAF1-213ENST00000574428 MON2Q7Z3U7 1717 aa32.84■■■□□ 2.85
ATPAF1-213ENST00000574428 ESCO1Q5FWF5 840 aa32.83■■■□□ 2.85
ATPAF1-213ENST00000574428 POLR3AO14802 1390 aaPredicted RBP32.82■■■□□ 2.84
ATPAF1-213ENST00000574428 NGDNQ8NEJ9 315 aaKnown RBP32.81■■■□□ 2.84
ATPAF1-213ENST00000574428 PHF8Q9UPP1 1060 aa32.81■■■□□ 2.84
ATPAF1-213ENST00000574428 ORAI2Q96SN7 254 aa32.81■■■□□ 2.84
ATPAF1-213ENST00000574428 ZNF692Q9BU19 519 aaPredicted RBP32.79■■■□□ 2.84
ATPAF1-213ENST00000574428 CGNL1Q0VF96 1302 aa32.79■■■□□ 2.84
ATPAF1-213ENST00000574428 EDC4Q6P2E9 1401 aaKnown RBP32.79■■■□□ 2.84
ATPAF1-213ENST00000574428 NPC1L1Q9UHC9 1359 aa32.78■■■□□ 2.84
ATPAF1-213ENST00000574428 USP6P35125 1406 aa32.77■■■□□ 2.84
ATPAF1-213ENST00000574428 SUGP2Q8IX01 1082 aaKnown RBP eCLIP32.76■■■□□ 2.84
ATPAF1-213ENST00000574428 NRKQ7Z2Y5 1582 aa32.76■■■□□ 2.84
ATPAF1-213ENST00000574428 PARD3Q8TEW0 1356 aa32.76■■■□□ 2.83
ATPAF1-213ENST00000574428 KIF1AQ12756 1690 aa32.73■■■□□ 2.83
ATPAF1-213ENST00000574428 KIF20BQ96Q89 1820 aa32.72■■■□□ 2.83
ATPAF1-213ENST00000574428 RALBP1Q15311 655 aa32.72■■■□□ 2.83
ATPAF1-213ENST00000574428 NSD2O96028 1365 aa32.7■■■□□ 2.82
ATPAF1-213ENST00000574428 FYB1O15117 783 aa32.69■■■□□ 2.82
ATPAF1-213ENST00000574428 SLAIN2Q9P270 581 aa32.69■■■□□ 2.82
ATPAF1-213ENST00000574428 SSH2Q76I76 1423 aa32.69■■■□□ 2.82
ATPAF1-213ENST00000574428 GGNBP2Q9H3C7 697 aa32.68■■■□□ 2.82
ATPAF1-213ENST00000574428 TTC21BQ7Z4L5 1316 aa32.68■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms