RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 WAPLQ7Z5K2 1190 aa25.7■■□□□ 1.7
SMG6-214ENST00000573827 STK26Q9P289 416 aa25.7■■□□□ 1.7
SMG6-214ENST00000573827 CFAP70Q5T0N1 1121 aa25.69■■□□□ 1.7
SMG6-214ENST00000573827 POTEAQ6S8J7 498 aa25.68■■□□□ 1.7
SMG6-214ENST00000573827 ORAI2Q96SN7 254 aa25.68■■□□□ 1.7
SMG6-214ENST00000573827 SIRT1Q96EB6 747 aa25.66■■□□□ 1.7
SMG6-214ENST00000573827 DHX57Q6P158 1386 aaKnown RBP25.66■■□□□ 1.7
SMG6-214ENST00000573827 ADGRB1O14514 1584 aa25.65■■□□□ 1.7
SMG6-214ENST00000573827 SOS2Q07890 1332 aaPredicted RBP25.63■■□□□ 1.69
SMG6-214ENST00000573827 PNPLA6Q8IY17 1366 aa25.62■■□□□ 1.69
SMG6-214ENST00000573827 LRRC59Q96AG4 307 aaKnown RBP25.61■■□□□ 1.69
SMG6-214ENST00000573827 DLC1Q96QB1 1528 aa25.59■■□□□ 1.69
SMG6-214ENST00000573827 FMN2Q9NZ56 1722 aa25.57■■□□□ 1.68
SMG6-214ENST00000573827 DCAF11Q8TEB1 546 aa25.56■■□□□ 1.68
SMG6-214ENST00000573827 PXDNQ92626 1479 aa25.55■■□□□ 1.68
SMG6-214ENST00000573827 STAC3Q96MF2 364 aa25.55■■□□□ 1.68
SMG6-214ENST00000573827 KDM2AQ9Y2K7 1162 aa25.53■■□□□ 1.68
SMG6-214ENST00000573827 ESCO1Q5FWF5 840 aa25.52■■□□□ 1.68
SMG6-214ENST00000573827 PRAM1Q96QH2 718 aa25.52■■□□□ 1.68
SMG6-214ENST00000573827 NUTM2FA1L443 756 aa25.5■■□□□ 1.67
SMG6-214ENST00000573827 NUTM2BA6NNL0 878 aaPredicted RBP25.5■■□□□ 1.67
SMG6-214ENST00000573827 NUTM2EB1AL46 878 aaPredicted RBP25.5■■□□□ 1.67
SMG6-214ENST00000573827 NUTM2AQ8IVF1 878 aaPredicted RBP25.5■■□□□ 1.67
SMG6-214ENST00000573827 NPHP3Q7Z494 1330 aa25.49■■□□□ 1.67
SMG6-214ENST00000573827 COL22A1Q8NFW1 1626 aaPredicted RBP25.48■■□□□ 1.67
SMG6-214ENST00000573827 FOXO3O43524 673 aa25.48■■□□□ 1.67
SMG6-214ENST00000573827 MEX3CQ5U5Q3 659 aaKnown RBP25.48■■□□□ 1.67
SMG6-214ENST00000573827 ADGRB2O60241 1585 aa25.48■■□□□ 1.67
SMG6-214ENST00000573827 SAFB2Q14151 953 aaKnown RBP eCLIP25.45■■□□□ 1.66
SMG6-214ENST00000573827 ZNF772Q68DY9 489 aaPredicted RBP25.45■■□□□ 1.66
SMG6-214ENST00000573827 TRAK1Q9UPV9 953 aa25.45■■□□□ 1.66
SMG6-214ENST00000573827 USP32Q8NFA0 1604 aa25.44■■□□□ 1.66
SMG6-214ENST00000573827 AFF2P51816 1311 aa25.43■■□□□ 1.66
SMG6-214ENST00000573827 KIF1AQ12756 1690 aa25.43■■□□□ 1.66
SMG6-214ENST00000573827 XPCQ01831 940 aaPredicted RBP25.43■■□□□ 1.66
SMG6-214ENST00000573827 RGPD8O14715 1765 aaPredicted RBP25.43■■□□□ 1.66
SMG6-214ENST00000573827 POGKQ9P215 609 aa25.41■■□□□ 1.66
SMG6-214ENST00000573827 ANKARQ7Z5J8 1434 aa25.4■■□□□ 1.66
SMG6-214ENST00000573827 ARHGEF28Q8N1W1 1705 aaKnown RBP25.39■■□□□ 1.65
SMG6-214ENST00000573827 KIAA1210Q9ULL0 1709 aa25.38■■□□□ 1.65
SMG6-214ENST00000573827 C8orf37Q96NL8 207 aa25.38■■□□□ 1.65
SMG6-214ENST00000573827 PHF8Q9UPP1 1060 aa25.38■■□□□ 1.65
SMG6-214ENST00000573827 PRR36Q9H6K5 1346 aa25.37■■□□□ 1.65
SMG6-214ENST00000573827 ADAMTS2O95450 1211 aa25.37■■□□□ 1.65
SMG6-214ENST00000573827 SPATA31A3Q5VYP0 1347 aa25.37■■□□□ 1.65
SMG6-214ENST00000573827 HIRIP3Q9BW71 556 aaPredicted RBP25.36■■□□□ 1.65
SMG6-214ENST00000573827 MINK1Q8N4C8 1332 aaPredicted RBP25.35■■□□□ 1.65
SMG6-214ENST00000573827 KRT28Q7Z3Y7 464 aa25.34■■□□□ 1.65
SMG6-214ENST00000573827 NBPF1Q3BBV0 1214 aa25.33■■□□□ 1.65
SMG6-214ENST00000573827 FNBP4Q8N3X1 1017 aaPredicted RBP25.33■■□□□ 1.65
SMG6-214ENST00000573827 CDK12Q9NYV4 1490 aaPredicted RBP25.33■■□□□ 1.65
SMG6-214ENST00000573827 TULP4Q9NRJ4 1543 aa25.32■■□□□ 1.64
SMG6-214ENST00000573827 WASLO00401 505 aaPredicted RBP25.32■■□□□ 1.64
SMG6-214ENST00000573827 RXRBP28702 533 aa25.31■■□□□ 1.64
SMG6-214ENST00000573827 SIN3AQ96ST3 1273 aa25.31■■□□□ 1.64
SMG6-214ENST00000573827 TNS3Q68CZ2 1445 aa25.3■■□□□ 1.64
SMG6-214ENST00000573827 L3MBTL2Q969R5 705 aa25.3■■□□□ 1.64
SMG6-214ENST00000573827 NGLY1Q96IV0 654 aa25.3■■□□□ 1.64
SMG6-214ENST00000573827 SBNO1A3KN83 1393 aa25.3■■□□□ 1.64
SMG6-214ENST00000573827 QTRT2Q9H974 415 aaKnown RBP25.28■■□□□ 1.64
SMG6-214ENST00000573827 ATP7BP35670 1465 aa25.28■■□□□ 1.64
SMG6-214ENST00000573827 MARF1Q9Y4F3 1742 aaKnown RBP25.27■■□□□ 1.64
SMG6-214ENST00000573827 PMFBP1Q8TBY8 1022 aa25.27■■□□□ 1.64
SMG6-214ENST00000573827 EIF3AQ14152 1382 aaKnown RBP25.27■■□□□ 1.64
SMG6-214ENST00000573827 BCL9LQ86UU0 1499 aa25.27■■□□□ 1.64
SMG6-214ENST00000573827 TRPM3Q9HCF6 1732 aaPredicted RBP25.26■■□□□ 1.63
SMG6-214ENST00000573827 RGS12O14924 1447 aa25.25■■□□□ 1.63
SMG6-214ENST00000573827 ATRNO75882 1429 aa25.25■■□□□ 1.63
SMG6-214ENST00000573827 RBM6P78332 1123 aaKnown RBP25.24■■□□□ 1.63
SMG6-214ENST00000573827 PSME1Q06323 249 aa25.23■■□□□ 1.63
SMG6-214ENST00000573827 USP21Q9UK80 565 aa25.23■■□□□ 1.63
SMG6-214ENST00000573827 SLIT2O94813 1529 aa25.21■■□□□ 1.63
SMG6-214ENST00000573827 ABCA3Q99758 1704 aa25.2■■□□□ 1.62
SMG6-214ENST00000573827 ALS2Q96Q42 1657 aa25.2■■□□□ 1.62
SMG6-214ENST00000573827 ARHGEF10O15013 1369 aa25.19■■□□□ 1.62
SMG6-214ENST00000573827 CABLES1Q8TDN4 633 aa25.19■■□□□ 1.62
SMG6-214ENST00000573827 NUDT16Q96DE0 195 aaKnown RBP25.19■■□□□ 1.62
SMG6-214ENST00000573827 CDK19Q9BWU1 502 aa25.19■■□□□ 1.62
SMG6-214ENST00000573827 TRPC5Q9UL62 973 aaPredicted RBP25.19■■□□□ 1.62
SMG6-214ENST00000573827 EP400Q96L91 3159 aa25.19■■□□□ 1.62
SMG6-214ENST00000573827 TOPAZ1Q8N9V7 1692 aa25.18■■□□□ 1.62
SMG6-214ENST00000573827 TRPM1Q7Z4N2 1603 aa25.17■■□□□ 1.62
SMG6-214ENST00000573827 NEUROD1Q13562 356 aa25.16■■□□□ 1.62
SMG6-214ENST00000573827 UPF1Q92900 1129 aaKnown RBP eCLIP25.16■■□□□ 1.62
SMG6-214ENST00000573827 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.15■■□□□ 1.62
SMG6-214ENST00000573827 ITSN1Q15811 1721 aa25.15■■□□□ 1.62
SMG6-214ENST00000573827 CENPJQ9HC77 1338 aaPredicted RBP25.14■■□□□ 1.62
SMG6-214ENST00000573827 POLR3AO14802 1390 aaPredicted RBP25.14■■□□□ 1.61
SMG6-214ENST00000573827 GPRASP1Q5JY77 1395 aa25.14■■□□□ 1.61
SMG6-214ENST00000573827 NBPF8Q3BBV2 869 aa25.12■■□□□ 1.61
SMG6-214ENST00000573827 CRYBG1Q9Y4K1 1723 aa25.12■■□□□ 1.61
SMG6-214ENST00000573827 PLEKHG3A1L390 1219 aa25.11■■□□□ 1.61
SMG6-214ENST00000573827 UNC5CLQ8IV45 518 aa25.11■■□□□ 1.61
SMG6-214ENST00000573827 NGDNQ8NEJ9 315 aaKnown RBP25.11■■□□□ 1.61
SMG6-214ENST00000573827 CCDC61Q9Y6R9 512 aa25.11■■□□□ 1.61
SMG6-214ENST00000573827 TRIM26Q12899 539 aaPredicted RBP25.1■■□□□ 1.61
SMG6-214ENST00000573827 LMOD2Q6P5Q4 547 aa25.09■■□□□ 1.61
SMG6-214ENST00000573827 QRICH2Q9H0J4 1663 aa25.09■■□□□ 1.61
SMG6-214ENST00000573827 GLI3P10071 1580 aa25.09■■□□□ 1.61
SMG6-214ENST00000573827 GJD4Q96KN9 370 aaPredicted RBP25.08■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms