RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 KIDINS220Q9ULH0 1771 aa14.77□□□□□ -0.05
CIITA-208ENST00000572665 CNTLNQ9NXG0 1405 aa14.76□□□□□ -0.05
CIITA-208ENST00000572665 FCHSD2O94868 740 aa14.76□□□□□ -0.05
CIITA-208ENST00000572665 ARSIQ5FYB1 569 aa14.76□□□□□ -0.05
CIITA-208ENST00000572665 KHSRPQ92945 711 aaKnown RBP eCLIP14.76□□□□□ -0.05
CIITA-208ENST00000572665 GPATCH8Q9UKJ3 1502 aaKnown RBP14.76□□□□□ -0.05
CIITA-208ENST00000572665 UHRF1BP1Q6BDS2 1440 aa14.75□□□□□ -0.05
CIITA-208ENST00000572665 CFDP1Q9UEE9 299 aaPredicted RBP14.75□□□□□ -0.05
CIITA-208ENST00000572665 SAMD9LQ8IVG5 1584 aa14.75□□□□□ -0.05
CIITA-208ENST00000572665 KIAA1107Q9UPP5 1409 aa14.75□□□□□ -0.05
CIITA-208ENST00000572665 SPAG9O60271 1321 aaKnown RBP14.74□□□□□ -0.05
CIITA-208ENST00000572665 NUDT7P0C024 238 aa14.74□□□□□ -0.05
CIITA-208ENST00000572665 HIC1Q14526 733 aa14.74□□□□□ -0.05
CIITA-208ENST00000572665 GPR153Q6NV75 609 aa14.74□□□□□ -0.05
CIITA-208ENST00000572665 SYCP2Q9BX26 1530 aa14.74□□□□□ -0.05
CIITA-208ENST00000572665 GNPATO15228 680 aa14.73□□□□□ -0.05
CIITA-208ENST00000572665 CEBPAP49715 358 aaPredicted RBP14.73□□□□□ -0.05
CIITA-208ENST00000572665 PTGDRQ13258 359 aa14.73□□□□□ -0.05
CIITA-208ENST00000572665 TYW1BQ6NUM6 668 aa14.73□□□□□ -0.05
CIITA-208ENST00000572665 C3P01024 1663 aa14.73□□□□□ -0.05
CIITA-208ENST00000572665 EHBP1L1Q8N3D4 1523 aa14.72□□□□□ -0.05
CIITA-208ENST00000572665 FOSBP53539 338 aa14.72□□□□□ -0.05
CIITA-208ENST00000572665 ZNF710Q8N1W2 664 aa14.72□□□□□ -0.05
CIITA-208ENST00000572665 MAP3K7O43318 606 aa14.71□□□□□ -0.05
CIITA-208ENST00000572665 NEUROD2Q15784 382 aa14.71□□□□□ -0.05
CIITA-208ENST00000572665 FBXW7Q969H0 707 aa14.71□□□□□ -0.05
CIITA-208ENST00000572665 RBM33Q96EV2 1170 aaKnown RBP14.71□□□□□ -0.05
CIITA-208ENST00000572665 CDHR5Q9HBB8 845 aa14.71□□□□□ -0.05
CIITA-208ENST00000572665 ATP7AQ04656 1500 aa14.71□□□□□ -0.06
CIITA-208ENST00000572665 MROH2AA6NES4 1674 aa14.71□□□□□ -0.06
CIITA-208ENST00000572665 HNRNPMP52272 730 aaKnown RBP eCLIP14.7□□□□□ -0.06
CIITA-208ENST00000572665 MINK1Q8N4C8 1332 aaPredicted RBP14.69□□□□□ -0.06
CIITA-208ENST00000572665 MAP2K5Q13163 448 aa14.69□□□□□ -0.06
CIITA-208ENST00000572665 SUPT6HQ7KZ85 1726 aaKnown RBP14.69□□□□□ -0.06
CIITA-208ENST00000572665 CEP162Q5TB80 1403 aa14.68□□□□□ -0.06
CIITA-208ENST00000572665 FECHP22830 423 aa14.68□□□□□ -0.06
CIITA-208ENST00000572665 INO80Q9ULG1 1556 aaPredicted RBP14.68□□□□□ -0.06
CIITA-208ENST00000572665 ADGBQ8N7X0 1667 aa14.68□□□□□ -0.06
CIITA-208ENST00000572665 SNPHO15079 494 aa14.67□□□□□ -0.06
CIITA-208ENST00000572665 OTUD5Q96G74 571 aa14.67□□□□□ -0.06
CIITA-208ENST00000572665 TIAM1Q13009 1591 aa14.66□□□□□ -0.06
CIITA-208ENST00000572665 A2MP01023 1474 aa14.66□□□□□ -0.06
CIITA-208ENST00000572665 TRIM66O15016 1216 aa14.66□□□□□ -0.06
CIITA-208ENST00000572665 TSR1Q2NL82 804 aaKnown RBP14.66□□□□□ -0.06
CIITA-208ENST00000572665 ZNF454Q8N9F8 522 aa14.66□□□□□ -0.06
CIITA-208ENST00000572665 CERKQ8TCT0 537 aa14.66□□□□□ -0.06
CIITA-208ENST00000572665 NPDC1Q9NQX5 325 aaPredicted RBP14.66□□□□□ -0.06
CIITA-208ENST00000572665 NPATQ14207 1427 aa14.66□□□□□ -0.06
CIITA-208ENST00000572665 STRCQ7RTU9 1775 aa14.65□□□□□ -0.06
CIITA-208ENST00000572665 PLXNC1O60486 1568 aa14.64□□□□□ -0.07
CIITA-208ENST00000572665 IRF6O14896 467 aa14.64□□□□□ -0.07
CIITA-208ENST00000572665 RSPH4AQ5TD94 716 aa14.64□□□□□ -0.07
CIITA-208ENST00000572665 ZDHHC16Q969W1 377 aa14.64□□□□□ -0.07
CIITA-208ENST00000572665 CCDC102AQ96A19 550 aa14.64□□□□□ -0.07
CIITA-208ENST00000572665 TMEM132AQ24JP5 1023 aa14.63□□□□□ -0.07
CIITA-208ENST00000572665 RTEL1-TNFRSF6BF6WH68 1400 aa14.63□□□□□ -0.07
CIITA-208ENST00000572665 ZMYM3Q14202 1370 aa14.62□□□□□ -0.07
CIITA-208ENST00000572665 CLTCQ00610 1675 aaKnown RBP14.62□□□□□ -0.07
CIITA-208ENST00000572665 PTPRTO14522 1441 aa14.62□□□□□ -0.07
CIITA-208ENST00000572665 LHX6Q9UPM6 363 aa14.61□□□□□ -0.07
CIITA-208ENST00000572665 PDE4DQ08499 809 aa14.6□□□□□ -0.07
CIITA-208ENST00000572665 GGT6Q6P531 493 aa14.6□□□□□ -0.07
CIITA-208ENST00000572665 ADAM33Q9BZ11 813 aa14.6□□□□□ -0.07
CIITA-208ENST00000572665 MBD5Q9P267 1494 aa14.59□□□□□ -0.07
CIITA-208ENST00000572665 HOXB1P14653 301 aaPredicted RBP14.59□□□□□ -0.07
CIITA-208ENST00000572665 NCOA2Q15596 1464 aa14.58□□□□□ -0.08
CIITA-208ENST00000572665 CCDC141Q6ZP82 1450 aa14.58□□□□□ -0.08
CIITA-208ENST00000572665 C6orf132Q5T0Z8 1188 aa14.58□□□□□ -0.08
CIITA-208ENST00000572665 LHX8Q68G74 356 aa14.58□□□□□ -0.08
CIITA-208ENST00000572665 GPBP1L1Q9HC44 474 aaPredicted RBP14.57□□□□□ -0.08
CIITA-208ENST00000572665 ZNF644Q9H582 1327 aaPredicted RBP14.57□□□□□ -0.08
CIITA-208ENST00000572665 NCOA1Q15788 1441 aa14.57□□□□□ -0.08
CIITA-208ENST00000572665 CAMSAP2Q08AD1 1489 aa14.57□□□□□ -0.08
CIITA-208ENST00000572665 FAM135AQ9P2D6 1515 aa14.56□□□□□ -0.08
CIITA-208ENST00000572665 ZNF142P52746 1687 aaPredicted RBP14.56□□□□□ -0.08
CIITA-208ENST00000572665 TSPY4P0CV99 314 aa14.56□□□□□ -0.08
CIITA-208ENST00000572665 TSPY10P0CW01 314 aa14.56□□□□□ -0.08
CIITA-208ENST00000572665 DHX29Q7Z478 1369 aaKnown RBP14.56□□□□□ -0.08
CIITA-208ENST00000572665 VPS8Q8N3P4 1428 aa14.56□□□□□ -0.08
CIITA-208ENST00000572665 CAMSAP1Q5T5Y3 1602 aa14.55□□□□□ -0.08
CIITA-208ENST00000572665 MYO3AQ8NEV4 1616 aa14.55□□□□□ -0.08
CIITA-208ENST00000572665 PSDA5PKW4 1024 aaPredicted RBP14.55□□□□□ -0.08
CIITA-208ENST00000572665 AMHR2Q16671 573 aa14.54□□□□□ -0.08
CIITA-208ENST00000572665 PPP4R3BQ5MIZ7 849 aa14.54□□□□□ -0.08
CIITA-208ENST00000572665 ARHGEF5Q12774 1597 aa14.54□□□□□ -0.08
CIITA-208ENST00000572665 CEP170BQ9Y4F5 1589 aaPredicted RBP14.53□□□□□ -0.08
CIITA-208ENST00000572665 PLA2R1Q13018 1463 aa14.53□□□□□ -0.08
CIITA-208ENST00000572665 PTPRKQ15262 1439 aa14.53□□□□□ -0.08
CIITA-208ENST00000572665 MAP3K1Q13233 1512 aa14.52□□□□□ -0.08
CIITA-208ENST00000572665 IQSEC2Q5JU85 1478 aa14.52□□□□□ -0.08
CIITA-208ENST00000572665 LRRC9Q6ZRR7 1453 aa14.52□□□□□ -0.08
CIITA-208ENST00000572665 KDM4CQ9H3R0 1056 aa14.52□□□□□ -0.09
CIITA-208ENST00000572665 KIF3BO15066 747 aa14.51□□□□□ -0.09
CIITA-208ENST00000572665 KDM5DQ9BY66 1539 aa14.51□□□□□ -0.09
CIITA-208ENST00000572665 BCL2L12Q9HB09 334 aa14.5□□□□□ -0.09
CIITA-208ENST00000572665 WASHC2CQ9Y4E1 1318 aa14.49□□□□□ -0.09
CIITA-208ENST00000572665 PADI6Q6TGC4 694 aa14.48□□□□□ -0.09
CIITA-208ENST00000572665 RBM27Q9P2N5 1060 aaKnown RBP14.48□□□□□ -0.09
CIITA-208ENST00000572665 A2ML1A8K2U0 1454 aa14.48□□□□□ -0.09
CIITA-208ENST00000572665 MIA2Q96PC5 1412 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms