RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 EFCAB6Q5THR3 1501 aa11.42□□□□□ -0.58
LINC00558-201ENST00000569422 VGFO15240 615 aaPredicted RBP11.42□□□□□ -0.58
LINC00558-201ENST00000569422 FRAT1Q92837 279 aaPredicted RBP11.42□□□□□ -0.58
LINC00558-201ENST00000569422 VWDEQ8N2E2 1590 aa11.42□□□□□ -0.58
LINC00558-201ENST00000569422 TCERG1O14776 1098 aaKnown RBP11.42□□□□□ -0.58
LINC00558-201ENST00000569422 RGS3P49796 1198 aa11.42□□□□□ -0.58
LINC00558-201ENST00000569422 ZMYM4Q5VZL5 1548 aa11.42□□□□□ -0.58
LINC00558-201ENST00000569422 MINK1Q8N4C8 1332 aaPredicted RBP11.41□□□□□ -0.58
LINC00558-201ENST00000569422 PPRC1Q5VV67 1664 aaKnown RBP11.41□□□□□ -0.58
LINC00558-201ENST00000569422 IPO9Q96P70 1041 aaKnown RBP11.41□□□□□ -0.58
LINC00558-201ENST00000569422 ABCA6Q8N139 1617 aa11.41□□□□□ -0.58
LINC00558-201ENST00000569422 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.41□□□□□ -0.58
LINC00558-201ENST00000569422 MAP3K4Q9Y6R4 1608 aa11.41□□□□□ -0.58
LINC00558-201ENST00000569422 BCL2L13Q9BXK5 485 aa11.4□□□□□ -0.58
LINC00558-201ENST00000569422 SYNMO15061 1565 aa11.4□□□□□ -0.58
LINC00558-201ENST00000569422 FAM69CQ0P6D2 419 aa11.4□□□□□ -0.58
LINC00558-201ENST00000569422 ZNF521Q96K83 1311 aa11.4□□□□□ -0.58
LINC00558-201ENST00000569422 PIK3C2GO75747 1445 aa11.4□□□□□ -0.58
LINC00558-201ENST00000569422 POGKQ9P215 609 aa11.4□□□□□ -0.59
LINC00558-201ENST00000569422 U2AF1L5P0DN76 240 aaPredicted RBP11.39□□□□□ -0.59
LINC00558-201ENST00000569422 U2AF1Q01081 240 aaKnown RBP eCLIP11.39□□□□□ -0.59
LINC00558-201ENST00000569422 GGNBP2Q9H3C7 697 aa11.39□□□□□ -0.59
LINC00558-201ENST00000569422 MYOM2P54296 1465 aa11.39□□□□□ -0.59
LINC00558-201ENST00000569422 U2SURPO15042 1029 aaKnown RBP11.39□□□□□ -0.59
LINC00558-201ENST00000569422 EVC2Q86UK5 1308 aa11.39□□□□□ -0.59
LINC00558-201ENST00000569422 WWC1Q8IX03 1113 aa11.38□□□□□ -0.59
LINC00558-201ENST00000569422 TCP11L2Q8N4U5 519 aa11.38□□□□□ -0.59
LINC00558-201ENST00000569422 CNKSR2Q8WXI2 1034 aa11.38□□□□□ -0.59
LINC00558-201ENST00000569422 YEATS2Q9ULM3 1422 aa11.38□□□□□ -0.59
LINC00558-201ENST00000569422 E9PSI1 815 aa11.38□□□□□ -0.59
LINC00558-201ENST00000569422 MROH2AA6NES4 1674 aa11.38□□□□□ -0.59
LINC00558-201ENST00000569422 CGNL1Q0VF96 1302 aa11.38□□□□□ -0.59
LINC00558-201ENST00000569422 PANK1Q8TE04 598 aa11.37□□□□□ -0.59
LINC00558-201ENST00000569422 PRAM1Q96QH2 718 aa11.37□□□□□ -0.59
LINC00558-201ENST00000569422 BACH2Q9BYV9 841 aa11.37□□□□□ -0.59
LINC00558-201ENST00000569422 COG6Q9Y2V7 657 aa11.37□□□□□ -0.59
LINC00558-201ENST00000569422 NPC1L1Q9UHC9 1359 aa11.37□□□□□ -0.59
LINC00558-201ENST00000569422 KDM5AP29375 1690 aaKnown RBP11.37□□□□□ -0.59
LINC00558-201ENST00000569422 MLH3Q9UHC1 1453 aa11.36□□□□□ -0.59
LINC00558-201ENST00000569422 PPM1GO15355 546 aaPredicted RBP11.36□□□□□ -0.59
LINC00558-201ENST00000569422 CFAP53Q96M91 514 aa11.36□□□□□ -0.59
LINC00558-201ENST00000569422 LAS1LQ9Y4W2 734 aaKnown RBP11.36□□□□□ -0.59
LINC00558-201ENST00000569422 KIF1BO60333 1816 aa11.36□□□□□ -0.59
LINC00558-201ENST00000569422 FRMPD1Q5SYB0 1578 aa11.36□□□□□ -0.59
LINC00558-201ENST00000569422 RPGRIP1LQ68CZ1 1315 aa11.36□□□□□ -0.59
LINC00558-201ENST00000569422 CLUAP1Q96AJ1 413 aa11.36□□□□□ -0.59
LINC00558-201ENST00000569422 INSRP06213 1382 aa11.36□□□□□ -0.59
LINC00558-201ENST00000569422 FBLN1P23142 703 aa11.35□□□□□ -0.59
LINC00558-201ENST00000569422 RUNDC1Q96C34 613 aa11.35□□□□□ -0.59
LINC00558-201ENST00000569422 MYOM1P52179 1685 aa11.34□□□□□ -0.59
LINC00558-201ENST00000569422 ABCC3O15438 1527 aa11.34□□□□□ -0.59
LINC00558-201ENST00000569422 ADGRB3O60242 1522 aa11.34□□□□□ -0.59
LINC00558-201ENST00000569422 SLC4A3P48751 1232 aa11.34□□□□□ -0.59
LINC00558-201ENST00000569422 TNNQ9UQP3 1299 aa11.34□□□□□ -0.59
LINC00558-201ENST00000569422 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.34□□□□□ -0.59
LINC00558-201ENST00000569422 CENPQQ7L2Z9 268 aaPredicted RBP11.33□□□□□ -0.6
LINC00558-201ENST00000569422 HECW2Q9P2P5 1572 aa11.33□□□□□ -0.6
LINC00558-201ENST00000569422 TRMT2AQ8IZ69 625 aaKnown RBP11.33□□□□□ -0.6
LINC00558-201ENST00000569422 NKTRP30414 1462 aaKnown RBP11.33□□□□□ -0.6
LINC00558-201ENST00000569422 LMTK2Q8IWU2 1503 aa11.32□□□□□ -0.6
LINC00558-201ENST00000569422 WAPLQ7Z5K2 1190 aa11.32□□□□□ -0.6
LINC00558-201ENST00000569422 SLC52A1Q9NWF4 448 aa11.32□□□□□ -0.6
LINC00558-201ENST00000569422 NRXN1Q9ULB1 1477 aa11.32□□□□□ -0.6
LINC00558-201ENST00000569422 MS4A1P11836 297 aa11.32□□□□□ -0.6
LINC00558-201ENST00000569422 POLR3AO14802 1390 aaPredicted RBP11.32□□□□□ -0.6
LINC00558-201ENST00000569422 SBNO2Q9Y2G9 1366 aa11.32□□□□□ -0.6
LINC00558-201ENST00000569422 TSR2Q969E8 191 aaKnown RBP11.32□□□□□ -0.6
LINC00558-201ENST00000569422 IGHDP01880 384 aa11.31□□□□□ -0.6
LINC00558-201ENST00000569422 CABP1Q9NZU7 370 aa11.31□□□□□ -0.6
LINC00558-201ENST00000569422 KDM2BQ8NHM5 1336 aa11.31□□□□□ -0.6
LINC00558-201ENST00000569422 CDK19Q9BWU1 502 aa11.3□□□□□ -0.6
LINC00558-201ENST00000569422 RTL5Q5HYW3 569 aaPredicted RBP11.3□□□□□ -0.6
LINC00558-201ENST00000569422 ADGRB1O14514 1584 aa11.29□□□□□ -0.6
LINC00558-201ENST00000569422 A0A1W2PP64 1363 aa11.29□□□□□ -0.6
LINC00558-201ENST00000569422 KIAA1210Q9ULL0 1709 aa11.29□□□□□ -0.6
LINC00558-201ENST00000569422 ANKRD36BQ8N2N9 1353 aa11.28□□□□□ -0.6
LINC00558-201ENST00000569422 NEO1Q92859 1461 aa11.28□□□□□ -0.6
LINC00558-201ENST00000569422 FYB1O15117 783 aa11.28□□□□□ -0.6
LINC00558-201ENST00000569422 DEKP35659 375 aaKnown RBP11.28□□□□□ -0.6
LINC00558-201ENST00000569422 RARSP54136 660 aaKnown RBP11.28□□□□□ -0.6
LINC00558-201ENST00000569422 TERF2IPQ9NYB0 399 aa11.28□□□□□ -0.6
LINC00558-201ENST00000569422 ESF1Q9H501 851 aaKnown RBP11.28□□□□□ -0.6
LINC00558-201ENST00000569422 RLBP1P12271 317 aa11.27□□□□□ -0.6
LINC00558-201ENST00000569422 HDGFL2Q7Z4V5 671 aaPredicted RBP11.27□□□□□ -0.6
LINC00558-201ENST00000569422 MAPK8IP3Q9UPT6 1336 aa11.27□□□□□ -0.6
LINC00558-201ENST00000569422 CDK11BP21127 795 aaKnown RBP11.26□□□□□ -0.61
LINC00558-201ENST00000569422 QRICH2Q9H0J4 1663 aa11.26□□□□□ -0.61
LINC00558-201ENST00000569422 DIP2CQ9Y2E4 1556 aa11.26□□□□□ -0.61
LINC00558-201ENST00000569422 NUTM2FA1L443 756 aa11.26□□□□□ -0.61
LINC00558-201ENST00000569422 NEURL4Q96JN8 1562 aa11.26□□□□□ -0.61
LINC00558-201ENST00000569422 FAM161AQ3B820 660 aa11.26□□□□□ -0.61
LINC00558-201ENST00000569422 SIGLEC1Q9BZZ2 1709 aa11.26□□□□□ -0.61
LINC00558-201ENST00000569422 GLI2P10070 1586 aa11.25□□□□□ -0.61
LINC00558-201ENST00000569422 CFAP74Q9C0B2 1584 aa11.25□□□□□ -0.61
LINC00558-201ENST00000569422 TULP4Q9NRJ4 1543 aa11.25□□□□□ -0.61
LINC00558-201ENST00000569422 NCKAP5LQ9HCH0 1330 aa11.25□□□□□ -0.61
LINC00558-201ENST00000569422 SETBP1Q9Y6X0 1596 aa11.25□□□□□ -0.61
LINC00558-201ENST00000569422 IFT172Q9UG01 1749 aa11.25□□□□□ -0.61
LINC00558-201ENST00000569422 CAMSAP1Q5T5Y3 1602 aa11.25□□□□□ -0.61
LINC00558-201ENST00000569422 TXNDC2Q86VQ3 553 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms