RNA–Protein interactions for RNA: ENST00000569243.5

UBR1-209, Transcript of ubiquitin protein ligase E3 component n-recognin 1, human

TSL 3

Gene UBR1, Length 702 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR1-209	ENST00000569243	FECH	P22830	423 aa		10.31	□□□□□ -0.76
UBR1-209	ENST00000569243	ATP6V1A	P38606	617 aa		10.31	□□□□□ -0.76
UBR1-209	ENST00000569243	RDH13	Q8NBN7	331 aa		10.31	□□□□□ -0.76
UBR1-209	ENST00000569243	SPRYD3	Q8NCJ5	442 aa		10.31	□□□□□ -0.76
UBR1-209	ENST00000569243	OAT	P04181	439 aa		10.3	□□□□□ -0.76
UBR1-209	ENST00000569243	ERBB4	Q15303	1308 aa		10.3	□□□□□ -0.76
UBR1-209	ENST00000569243	BRICD5	Q6PL45	260 aa		10.29	□□□□□ -0.76
UBR1-209	ENST00000569243	NPAS3	Q8IXF0	933 aa		10.28	□□□□□ -0.76
UBR1-209	ENST00000569243	REPIN1	Q9BWE0	567 aa	Known RBP	10.28	□□□□□ -0.76
UBR1-209	ENST00000569243		H3BM21	787 aa		10.27	□□□□□ -0.77
UBR1-209	ENST00000569243	MSS51	Q4VC12	460 aa		10.27	□□□□□ -0.77
UBR1-209	ENST00000569243	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	10.27	□□□□□ -0.77
UBR1-209	ENST00000569243	SALL2	Q9Y467	1007 aa	Predicted RBP	10.27	□□□□□ -0.77
UBR1-209	ENST00000569243	BMP1	P13497	986 aa		10.26	□□□□□ -0.77
UBR1-209	ENST00000569243	RNF19B	Q6ZMZ0	732 aa		10.26	□□□□□ -0.77
UBR1-209	ENST00000569243	KCTD17	Q8N5Z5	321 aa		10.25	□□□□□ -0.77
UBR1-209	ENST00000569243	DDX11L8	A8MPP1	907 aa		10.24	□□□□□ -0.77
UBR1-209	ENST00000569243	FCHSD2	O94868	740 aa		10.24	□□□□□ -0.77
UBR1-209	ENST00000569243	RC3H1	Q5TC82	1133 aa	Known RBP	10.24	□□□□□ -0.77
UBR1-209	ENST00000569243	TRIM46	Q7Z4K8	759 aa		10.24	□□□□□ -0.77
UBR1-209	ENST00000569243	METTL3	Q86U44	580 aa	Known RBP	10.24	□□□□□ -0.77
UBR1-209	ENST00000569243	ALDH1A1	P00352	501 aa		10.22	□□□□□ -0.77
UBR1-209	ENST00000569243	SKOR1	P84550	965 aa		10.21	□□□□□ -0.77
UBR1-209	ENST00000569243	DAXX	Q9UER7	740 aa	Predicted RBP	10.21	□□□□□ -0.77
UBR1-209	ENST00000569243	GCGR	P47871	477 aa		10.2	□□□□□ -0.78
UBR1-209	ENST00000569243	MMP16	P51512	607 aa		10.19	□□□□□ -0.78
UBR1-209	ENST00000569243	CAPN5	O15484	640 aa	Predicted RBP	10.18	□□□□□ -0.78
UBR1-209	ENST00000569243	CCDC24	Q8N4L8	307 aa		10.18	□□□□□ -0.78
UBR1-209	ENST00000569243	KCNMA1	Q12791	1236 aa		10.17	□□□□□ -0.78
UBR1-209	ENST00000569243	NLRP7	Q8WX94	980 aa		10.17	□□□□□ -0.78
UBR1-209	ENST00000569243	ARHGEF1	Q92888	912 aa	Known RBP	10.17	□□□□□ -0.78
UBR1-209	ENST00000569243	GSK3A	P49840	483 aa		10.15	□□□□□ -0.78
UBR1-209	ENST00000569243	WNT7B	P56706	349 aa		10.15	□□□□□ -0.78
UBR1-209	ENST00000569243	CFAP44	Q96MT7	982 aa		10.14	□□□□□ -0.79
UBR1-209	ENST00000569243	ZFP42	Q96MM3	310 aa		10.13	□□□□□ -0.79
UBR1-209	ENST00000569243	DXO	O77932	396 aa	Known RBP	10.12	□□□□□ -0.79
UBR1-209	ENST00000569243		Q3C1V9	767 aa		10.12	□□□□□ -0.79
UBR1-209	ENST00000569243	GRIPAP1	Q4V328	841 aa		10.12	□□□□□ -0.79
UBR1-209	ENST00000569243	WASF2	Q9Y6W5	498 aa		10.12	□□□□□ -0.79
UBR1-209	ENST00000569243	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	10.11	□□□□□ -0.79
UBR1-209	ENST00000569243	SULF1	Q8IWU6	871 aa		10.11	□□□□□ -0.79
UBR1-209	ENST00000569243	TMEM151A	Q8N4L1	468 aa		10.1	□□□□□ -0.79
UBR1-209	ENST00000569243	USB1	Q9BQ65	265 aa	Known RBP	10.1	□□□□□ -0.79
UBR1-209	ENST00000569243	SIAH2	O43255	324 aa		10.09	□□□□□ -0.79
UBR1-209	ENST00000569243	HIC1	Q14526	733 aa		10.09	□□□□□ -0.79
UBR1-209	ENST00000569243	KCNV2	Q8TDN2	545 aa		10.09	□□□□□ -0.79
UBR1-209	ENST00000569243	GDF11	O95390	407 aa		10.07	□□□□□ -0.8
UBR1-209	ENST00000569243	EHBP1	Q8NDI1	1231 aa		10.07	□□□□□ -0.8
UBR1-209	ENST00000569243	VSIG8	P0DPA2	414 aa		10.06	□□□□□ -0.8
UBR1-209	ENST00000569243	RASSF7	Q02833	373 aa		10.06	□□□□□ -0.8
UBR1-209	ENST00000569243	SOBP	A7XYQ1	873 aa		10.05	□□□□□ -0.8
UBR1-209	ENST00000569243	PURB	Q96QR8	312 aa	Known RBP	10.01	□□□□□ -0.81
UBR1-209	ENST00000569243	PHOX2B	Q99453	314 aa		10.01	□□□□□ -0.81
UBR1-209	ENST00000569243	GNPAT	O15228	680 aa		10	□□□□□ -0.81
UBR1-209	ENST00000569243	SCARF1	Q14162	830 aa		10	□□□□□ -0.81
UBR1-209	ENST00000569243	MRPL14	Q6P1L8	145 aa	Known RBP	10	□□□□□ -0.81
UBR1-209	ENST00000569243	SEMA3E	O15041	775 aa		9.99	□□□□□ -0.81
UBR1-209	ENST00000569243	PTCRA	Q6ISU1	281 aa	Predicted RBP	9.98	□□□□□ -0.81
UBR1-209	ENST00000569243	HLA-C	Q95604	372 aa		9.98	□□□□□ -0.81
UBR1-209	ENST00000569243	RNF225	M0QZC1	329 aa	Predicted RBP	9.95	□□□□□ -0.82
UBR1-209	ENST00000569243	KDM4A	O75164	1064 aa		9.95	□□□□□ -0.82
UBR1-209	ENST00000569243	JUND	P17535	347 aa		9.95	□□□□□ -0.82
UBR1-209	ENST00000569243	RBM26	Q5T8P6	1007 aa	Known RBP	9.95	□□□□□ -0.82
UBR1-209	ENST00000569243	GPAT2	Q6NUI2	795 aa		9.95	□□□□□ -0.82
UBR1-209	ENST00000569243	ADAMTS8	Q9UP79	889 aa		9.95	□□□□□ -0.82
UBR1-209	ENST00000569243	TLL2	Q9Y6L7	1015 aa		9.95	□□□□□ -0.82
UBR1-209	ENST00000569243	SH3BP2	P78314	561 aa		9.94	□□□□□ -0.82
UBR1-209	ENST00000569243	PPFIA3	O75145	1194 aa		9.93	□□□□□ -0.82
UBR1-209	ENST00000569243	NNT	Q13423	1086 aa		9.93	□□□□□ -0.82
UBR1-209	ENST00000569243	NUDT12	Q9BQG2	462 aa		9.93	□□□□□ -0.82
UBR1-209	ENST00000569243	CD46	P15529	392 aa		9.92	□□□□□ -0.82
UBR1-209	ENST00000569243	XP32	Q5T750	250 aa		9.92	□□□□□ -0.82
UBR1-209	ENST00000569243	MAN1A2	O60476	641 aa		9.91	□□□□□ -0.82
UBR1-209	ENST00000569243	SYMPK	Q92797	1274 aa	Known RBP	9.91	□□□□□ -0.82
UBR1-209	ENST00000569243	GPR37	O15354	613 aa		9.9	□□□□□ -0.82
UBR1-209	ENST00000569243	TIMP2	P16035	220 aa		9.9	□□□□□ -0.82
UBR1-209	ENST00000569243	WDR4	P57081	412 aa	Known RBP	9.9	□□□□□ -0.82
UBR1-209	ENST00000569243	GUCA2A	Q02747	115 aa		9.89	□□□□□ -0.83
UBR1-209	ENST00000569243	KRT76	Q01546	638 aa		9.88	□□□□□ -0.83
UBR1-209	ENST00000569243	CNTNAP3B	Q96NU0	1288 aa		9.88	□□□□□ -0.83
UBR1-209	ENST00000569243	CNTNAP3	Q9BZ76	1288 aa		9.88	□□□□□ -0.83
UBR1-209	ENST00000569243	PLEKHG3	A1L390	1219 aa		9.87	□□□□□ -0.83
UBR1-209	ENST00000569243	ADH1C	P00326	375 aa		9.87	□□□□□ -0.83
UBR1-209	ENST00000569243	LINC01559	Q495D7	138 aa		9.87	□□□□□ -0.83
UBR1-209	ENST00000569243	C6orf118	Q5T5N4	469 aa		9.87	□□□□□ -0.83
UBR1-209	ENST00000569243	USP46	P62068	366 aa		9.86	□□□□□ -0.83
UBR1-209	ENST00000569243	TSHZ2	Q9NRE2	1034 aa		9.86	□□□□□ -0.83
UBR1-209	ENST00000569243	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	9.86	□□□□□ -0.83
UBR1-209	ENST00000569243	HOXA2	O43364	376 aa		9.85	□□□□□ -0.83
UBR1-209	ENST00000569243	IGHA1	P01876	353 aa		9.85	□□□□□ -0.83
UBR1-209	ENST00000569243	IRS1	P35568	1242 aa		9.85	□□□□□ -0.83
UBR1-209	ENST00000569243	GPR161	Q8N6U8	529 aa	Known RBP	9.85	□□□□□ -0.83
UBR1-209	ENST00000569243	BAP1	Q92560	729 aa		9.83	□□□□□ -0.84
UBR1-209	ENST00000569243	KLF16	Q9BXK1	252 aa	Predicted RBP	9.83	□□□□□ -0.84
UBR1-209	ENST00000569243	CCNYL3	P0C7X3	344 aa		9.82	□□□□□ -0.84
UBR1-209	ENST00000569243	RETREG3	Q86VR2	466 aa		9.82	□□□□□ -0.84
UBR1-209	ENST00000569243	UNC93B1	Q9H1C4	597 aa		9.82	□□□□□ -0.84
UBR1-209	ENST00000569243	VARS	P26640	1264 aa	Known RBP	9.81	□□□□□ -0.84
UBR1-209	ENST00000569243	ZNF385C	Q66K41	422 aa	Predicted RBP	9.81	□□□□□ -0.84
UBR1-209	ENST00000569243	SVOP	Q8N4V2	548 aa		9.81	□□□□□ -0.84

Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms