RNA–Protein interactions for RNA: ENST00000569136.5

CAPN3-219, Transcript of calpain 3, humanhuman

TSL 2 BASIC

Gene CAPN3, Length 1,029 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-219ENST00000569136 PTPRTO14522 1441 aa13.73□□□□□ -0.21
CAPN3-219ENST00000569136 ILDR1Q86SU0 546 aaPredicted RBP13.73□□□□□ -0.21
CAPN3-219ENST00000569136 CLTCQ00610 1675 aaKnown RBP13.72□□□□□ -0.21
CAPN3-219ENST00000569136 HDGFP51858 240 aaKnown RBP13.72□□□□□ -0.21
CAPN3-219ENST00000569136 LMTK2Q8IWU2 1503 aa13.72□□□□□ -0.21
CAPN3-219ENST00000569136 TRIM52Q96A61 297 aa13.71□□□□□ -0.21
CAPN3-219ENST00000569136 EID1Q9Y6B2 187 aa13.71□□□□□ -0.21
CAPN3-219ENST00000569136 PRDM15P57071 1507 aaPredicted RBP13.7□□□□□ -0.22
CAPN3-219ENST00000569136 PREX1Q8TCU6 1659 aa13.7□□□□□ -0.22
CAPN3-219ENST00000569136 ERVK-7P63135 1459 aa13.7□□□□□ -0.22
CAPN3-219ENST00000569136 PLA2R1Q13018 1463 aa13.7□□□□□ -0.22
CAPN3-219ENST00000569136 CROCC2H7BZ55 1655 aa13.69□□□□□ -0.22
CAPN3-219ENST00000569136 POTEFA5A3E0 1075 aa13.69□□□□□ -0.22
CAPN3-219ENST00000569136 TXNDC2Q86VQ3 553 aa13.69□□□□□ -0.22
CAPN3-219ENST00000569136 NAIPQ13075 1403 aa13.68□□□□□ -0.22
CAPN3-219ENST00000569136 CERKQ8TCT0 537 aa13.68□□□□□ -0.22
CAPN3-219ENST00000569136 L3MBTL3Q96JM7 780 aaPredicted RBP13.68□□□□□ -0.22
CAPN3-219ENST00000569136 MROH1Q8NDA8 1641 aa13.68□□□□□ -0.22
CAPN3-219ENST00000569136 RPRD2Q5VT52 1461 aaKnown RBP13.67□□□□□ -0.22
CAPN3-219ENST00000569136 VWDEQ8N2E2 1590 aa13.67□□□□□ -0.22
CAPN3-219ENST00000569136 HFM1A2PYH4 1435 aa13.67□□□□□ -0.22
CAPN3-219ENST00000569136 BOLA1Q9Y3E2 137 aa13.67□□□□□ -0.22
CAPN3-219ENST00000569136 SPATA31D1Q6ZQQ2 1576 aa13.66□□□□□ -0.22
CAPN3-219ENST00000569136 NOS1P29475 1434 aa13.66□□□□□ -0.22
CAPN3-219ENST00000569136 CEP170BQ9Y4F5 1589 aaPredicted RBP13.65□□□□□ -0.22
CAPN3-219ENST00000569136 ZC3H13Q5T200 1668 aaKnown RBP13.65□□□□□ -0.22
CAPN3-219ENST00000569136 CAMSAP1Q5T5Y3 1602 aa13.64□□□□□ -0.23
CAPN3-219ENST00000569136 UGGT1Q9NYU2 1555 aa13.64□□□□□ -0.23
CAPN3-219ENST00000569136 HRCP23327 699 aa13.64□□□□□ -0.23
CAPN3-219ENST00000569136 FBXO41Q8TF61 875 aa13.64□□□□□ -0.23
CAPN3-219ENST00000569136 DEPDC5O75140 1603 aa13.64□□□□□ -0.23
CAPN3-219ENST00000569136 TMEM2Q9UHN6 1383 aa13.63□□□□□ -0.23
CAPN3-219ENST00000569136 LTKP29376 864 aa13.63□□□□□ -0.23
CAPN3-219ENST00000569136 MICALL2Q8IY33 904 aa13.63□□□□□ -0.23
CAPN3-219ENST00000569136 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.63□□□□□ -0.23
CAPN3-219ENST00000569136 NPHP4O75161 1426 aaPredicted RBP13.59□□□□□ -0.23
CAPN3-219ENST00000569136 SETD5Q9C0A6 1442 aa13.59□□□□□ -0.23
CAPN3-219ENST00000569136 CADPS2Q86UW7 1296 aa13.59□□□□□ -0.23
CAPN3-219ENST00000569136 MPHOSPH9Q99550 1183 aa13.59□□□□□ -0.23
CAPN3-219ENST00000569136 EFCAB6Q5THR3 1501 aa13.59□□□□□ -0.23
CAPN3-219ENST00000569136 MYO3AQ8NEV4 1616 aa13.58□□□□□ -0.24
CAPN3-219ENST00000569136 PPP1R15AO75807 674 aaPredicted RBP13.58□□□□□ -0.24
CAPN3-219ENST00000569136 C3orf67Q6ZVT6 689 aa13.58□□□□□ -0.24
CAPN3-219ENST00000569136 BCANQ96GW7 911 aa13.58□□□□□ -0.24
CAPN3-219ENST00000569136 MED14O60244 1454 aa13.58□□□□□ -0.24
CAPN3-219ENST00000569136 ZNF335Q9H4Z2 1342 aaPredicted RBP13.58□□□□□ -0.24
CAPN3-219ENST00000569136 ARHGAP23Q9P227 1491 aa13.56□□□□□ -0.24
CAPN3-219ENST00000569136 STRCQ7RTU9 1775 aa13.56□□□□□ -0.24
CAPN3-219ENST00000569136 VSIG10Q8N0Z9 540 aa13.56□□□□□ -0.24
CAPN3-219ENST00000569136 ZNF142P52746 1687 aaPredicted RBP13.56□□□□□ -0.24
CAPN3-219ENST00000569136 SCAF11Q99590 1463 aaKnown RBP13.55□□□□□ -0.24
CAPN3-219ENST00000569136 UNC13BO14795 1591 aa13.55□□□□□ -0.24
CAPN3-219ENST00000569136 CEP152O94986 1710 aa13.54□□□□□ -0.24
CAPN3-219ENST00000569136 ZNF326Q5BKZ1 582 aaKnown RBP13.54□□□□□ -0.24
CAPN3-219ENST00000569136 TBX22Q9Y458 520 aa13.54□□□□□ -0.24
CAPN3-219ENST00000569136 SLIT1O75093 1534 aa13.54□□□□□ -0.24
CAPN3-219ENST00000569136 TET3O43151 1660 aa13.53□□□□□ -0.24
CAPN3-219ENST00000569136 TMEM121BQ9BXQ6 578 aaPredicted RBP13.53□□□□□ -0.24
CAPN3-219ENST00000569136 RPGRIP1LQ68CZ1 1315 aa13.53□□□□□ -0.24
CAPN3-219ENST00000569136 KCNA6P17658 529 aa13.52□□□□□ -0.25
CAPN3-219ENST00000569136 WDR70Q9NW82 654 aa13.52□□□□□ -0.25
CAPN3-219ENST00000569136 IQGAP3Q86VI3 1631 aa13.52□□□□□ -0.25
CAPN3-219ENST00000569136 CFAP65Q6ZU64 1925 aaKnown RBP13.52□□□□□ -0.25
CAPN3-219ENST00000569136 RIMS2Q9UQ26 1411 aa13.51□□□□□ -0.25
CAPN3-219ENST00000569136 TMC2Q8TDI7 906 aa13.51□□□□□ -0.25
CAPN3-219ENST00000569136 SLC26A8Q96RN1 970 aa13.51□□□□□ -0.25
CAPN3-219ENST00000569136 POTEB2H3BUK9 544 aa13.5□□□□□ -0.25
CAPN3-219ENST00000569136 PDE4AP27815 886 aa13.5□□□□□ -0.25
CAPN3-219ENST00000569136 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.5□□□□□ -0.25
CAPN3-219ENST00000569136 KDM2AQ9Y2K7 1162 aa13.5□□□□□ -0.25
CAPN3-219ENST00000569136 RAB3GAP2Q9H2M9 1393 aa13.49□□□□□ -0.25
CAPN3-219ENST00000569136 PLEKHG1Q9ULL1 1385 aa13.49□□□□□ -0.25
CAPN3-219ENST00000569136 TOM1O60784 492 aa13.49□□□□□ -0.25
CAPN3-219ENST00000569136 LARP6Q9BRS8 491 aaKnown RBP13.49□□□□□ -0.25
CAPN3-219ENST00000569136 SYNMO15061 1565 aa13.49□□□□□ -0.25
CAPN3-219ENST00000569136 UBAP1LF5GYI3 381 aa13.48□□□□□ -0.25
CAPN3-219ENST00000569136 NUTM2DQ5VT03 806 aaPredicted RBP13.48□□□□□ -0.25
CAPN3-219ENST00000569136 IQSEC2Q5JU85 1478 aa13.48□□□□□ -0.25
CAPN3-219ENST00000569136 ZFYVE9O95405 1425 aa13.47□□□□□ -0.25
CAPN3-219ENST00000569136 LTBP4Q8N2S1 1624 aa13.46□□□□□ -0.25
CAPN3-219ENST00000569136 ADGRB3O60242 1522 aa13.46□□□□□ -0.25
CAPN3-219ENST00000569136 PROSER2Q86WR7 435 aaPredicted RBP13.46□□□□□ -0.25
CAPN3-219ENST00000569136 UBR1Q8IWV7 1749 aa13.45□□□□□ -0.26
CAPN3-219ENST00000569136 KDM5AP29375 1690 aaKnown RBP13.45□□□□□ -0.26
CAPN3-219ENST00000569136 GCC2Q8IWJ2 1684 aa13.45□□□□□ -0.26
CAPN3-219ENST00000569136 SCUBE2Q9NQ36 999 aa13.45□□□□□ -0.26
CAPN3-219ENST00000569136 PIK3C2BO00750 1634 aa13.45□□□□□ -0.26
CAPN3-219ENST00000569136 NEURL4Q96JN8 1562 aa13.45□□□□□ -0.26
CAPN3-219ENST00000569136 CPS1P31327 1500 aa13.44□□□□□ -0.26
CAPN3-219ENST00000569136 POTEJP0CG39 1038 aa13.44□□□□□ -0.26
CAPN3-219ENST00000569136 CCDC144AA2RUR9 1427 aa13.44□□□□□ -0.26
CAPN3-219ENST00000569136 PIK3R4Q99570 1358 aa13.44□□□□□ -0.26
CAPN3-219ENST00000569136 E9PCH4 1651 aa13.44□□□□□ -0.26
CAPN3-219ENST00000569136 RGL3Q3MIN7 710 aa13.43□□□□□ -0.26
CAPN3-219ENST00000569136 MAMSTRQ6ZN01 415 aa13.43□□□□□ -0.26
CAPN3-219ENST00000569136 CRISPLD2Q9H0B8 497 aa13.43□□□□□ -0.26
CAPN3-219ENST00000569136 C2orf72A6NCS6 295 aa13.42□□□□□ -0.26
CAPN3-219ENST00000569136 TRIM26Q12899 539 aaPredicted RBP13.42□□□□□ -0.26
CAPN3-219ENST00000569136 STAC3Q96MF2 364 aa13.42□□□□□ -0.26
CAPN3-219ENST00000569136 DDX27Q96GQ7 796 aaKnown RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms