RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 ADGRB2O60241 1585 aa11.55□□□□□ -0.56
CDH3-209ENST00000569080 TMEM132EQ6IEE7 984 aa11.55□□□□□ -0.56
CDH3-209ENST00000569080 C14orf93Q9H972 538 aaKnown RBP11.55□□□□□ -0.56
CDH3-209ENST00000569080 SPATA31A6Q5VVP1 1343 aa11.55□□□□□ -0.56
CDH3-209ENST00000569080 PNPLA6Q8IY17 1366 aa11.54□□□□□ -0.56
CDH3-209ENST00000569080 COL22A1Q8NFW1 1626 aaPredicted RBP11.53□□□□□ -0.56
CDH3-209ENST00000569080 PXDNQ92626 1479 aa11.53□□□□□ -0.56
CDH3-209ENST00000569080 CFAP70Q5T0N1 1121 aa11.53□□□□□ -0.56
CDH3-209ENST00000569080 DDX17Q92841 729 aaKnown RBP11.53□□□□□ -0.56
CDH3-209ENST00000569080 WAPLQ7Z5K2 1190 aa11.52□□□□□ -0.57
CDH3-209ENST00000569080 ORAI2Q96SN7 254 aa11.52□□□□□ -0.57
CDH3-209ENST00000569080 STK26Q9P289 416 aa11.52□□□□□ -0.57
CDH3-209ENST00000569080 SOS2Q07890 1332 aaPredicted RBP11.52□□□□□ -0.57
CDH3-209ENST00000569080 USP32Q8NFA0 1604 aa11.52□□□□□ -0.57
CDH3-209ENST00000569080 KIF1AQ12756 1690 aa11.52□□□□□ -0.57
CDH3-209ENST00000569080 ARHGEF28Q8N1W1 1705 aaKnown RBP11.52□□□□□ -0.57
CDH3-209ENST00000569080 SIRT1Q96EB6 747 aa11.51□□□□□ -0.57
CDH3-209ENST00000569080 KIAA1210Q9ULL0 1709 aa11.51□□□□□ -0.57
CDH3-209ENST00000569080 RGPD8O14715 1765 aaPredicted RBP11.5□□□□□ -0.57
CDH3-209ENST00000569080 POTEAQ6S8J7 498 aa11.5□□□□□ -0.57
CDH3-209ENST00000569080 DCAF11Q8TEB1 546 aa11.47□□□□□ -0.57
CDH3-209ENST00000569080 LRRC59Q96AG4 307 aaKnown RBP11.47□□□□□ -0.57
CDH3-209ENST00000569080 STAC3Q96MF2 364 aa11.47□□□□□ -0.57
CDH3-209ENST00000569080 PRAM1Q96QH2 718 aa11.46□□□□□ -0.57
CDH3-209ENST00000569080 MARF1Q9Y4F3 1742 aaKnown RBP11.46□□□□□ -0.58
CDH3-209ENST00000569080 TULP4Q9NRJ4 1543 aa11.45□□□□□ -0.58
CDH3-209ENST00000569080 ANKARQ7Z5J8 1434 aa11.45□□□□□ -0.58
CDH3-209ENST00000569080 NPHP3Q7Z494 1330 aa11.45□□□□□ -0.58
CDH3-209ENST00000569080 ABCA3Q99758 1704 aa11.44□□□□□ -0.58
CDH3-209ENST00000569080 TRPM3Q9HCF6 1732 aaPredicted RBP11.44□□□□□ -0.58
CDH3-209ENST00000569080 NUTM2FA1L443 756 aa11.44□□□□□ -0.58
CDH3-209ENST00000569080 ESCO1Q5FWF5 840 aa11.44□□□□□ -0.58
CDH3-209ENST00000569080 KDM2AQ9Y2K7 1162 aa11.44□□□□□ -0.58
CDH3-209ENST00000569080 TOPAZ1Q8N9V7 1692 aa11.43□□□□□ -0.58
CDH3-209ENST00000569080 NUTM2BA6NNL0 878 aaPredicted RBP11.42□□□□□ -0.58
CDH3-209ENST00000569080 NUTM2EB1AL46 878 aaPredicted RBP11.42□□□□□ -0.58
CDH3-209ENST00000569080 FOXO3O43524 673 aa11.42□□□□□ -0.58
CDH3-209ENST00000569080 SAFB2Q14151 953 aaKnown RBP eCLIP11.42□□□□□ -0.58
CDH3-209ENST00000569080 MEX3CQ5U5Q3 659 aaKnown RBP11.42□□□□□ -0.58
CDH3-209ENST00000569080 NUTM2AQ8IVF1 878 aaPredicted RBP11.42□□□□□ -0.58
CDH3-209ENST00000569080 TRAK1Q9UPV9 953 aa11.42□□□□□ -0.58
CDH3-209ENST00000569080 ATP7BP35670 1465 aa11.42□□□□□ -0.58
CDH3-209ENST00000569080 TRPM1Q7Z4N2 1603 aa11.42□□□□□ -0.58
CDH3-209ENST00000569080 PRR36Q9H6K5 1346 aa11.41□□□□□ -0.58
CDH3-209ENST00000569080 ITSN1Q15811 1721 aa11.41□□□□□ -0.58
CDH3-209ENST00000569080 ALS2Q96Q42 1657 aa11.41□□□□□ -0.58
CDH3-209ENST00000569080 CDK12Q9NYV4 1490 aaPredicted RBP11.41□□□□□ -0.58
CDH3-209ENST00000569080 XPCQ01831 940 aaPredicted RBP11.41□□□□□ -0.58
CDH3-209ENST00000569080 TNS3Q68CZ2 1445 aa11.41□□□□□ -0.58
CDH3-209ENST00000569080 CRYBG1Q9Y4K1 1723 aa11.4□□□□□ -0.58
CDH3-209ENST00000569080 AFF2P51816 1311 aa11.4□□□□□ -0.58
CDH3-209ENST00000569080 ZNF772Q68DY9 489 aaPredicted RBP11.4□□□□□ -0.58
CDH3-209ENST00000569080 SPATA31A3Q5VYP0 1347 aa11.39□□□□□ -0.59
CDH3-209ENST00000569080 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.39□□□□□ -0.59
CDH3-209ENST00000569080 POGKQ9P215 609 aa11.39□□□□□ -0.59
CDH3-209ENST00000569080 PHF8Q9UPP1 1060 aa11.39□□□□□ -0.59
CDH3-209ENST00000569080 EIF3AQ14152 1382 aaKnown RBP11.39□□□□□ -0.59
CDH3-209ENST00000569080 MINK1Q8N4C8 1332 aaPredicted RBP11.38□□□□□ -0.59
CDH3-209ENST00000569080 RGS12O14924 1447 aa11.38□□□□□ -0.59
CDH3-209ENST00000569080 C8orf37Q96NL8 207 aa11.38□□□□□ -0.59
CDH3-209ENST00000569080 HIRIP3Q9BW71 556 aaPredicted RBP11.38□□□□□ -0.59
CDH3-209ENST00000569080 QRICH2Q9H0J4 1663 aa11.38□□□□□ -0.59
CDH3-209ENST00000569080 SBNO1A3KN83 1393 aa11.38□□□□□ -0.59
CDH3-209ENST00000569080 WASLO00401 505 aaPredicted RBP11.37□□□□□ -0.59
CDH3-209ENST00000569080 ADAMTS2O95450 1211 aa11.37□□□□□ -0.59
CDH3-209ENST00000569080 NBPF1Q3BBV0 1214 aa11.37□□□□□ -0.59
CDH3-209ENST00000569080 EP400Q96L91 3159 aa11.37□□□□□ -0.59
CDH3-209ENST00000569080 ATRNO75882 1429 aa11.36□□□□□ -0.59
CDH3-209ENST00000569080 L3MBTL2Q969R5 705 aa11.36□□□□□ -0.59
CDH3-209ENST00000569080 SIN3AQ96ST3 1273 aa11.36□□□□□ -0.59
CDH3-209ENST00000569080 BCL9LQ86UU0 1499 aa11.36□□□□□ -0.59
CDH3-209ENST00000569080 PLCH1Q4KWH8 1693 aa11.36□□□□□ -0.59
CDH3-209ENST00000569080 SLIT2O94813 1529 aa11.35□□□□□ -0.59
CDH3-209ENST00000569080 KRT28Q7Z3Y7 464 aa11.35□□□□□ -0.59
CDH3-209ENST00000569080 FNBP4Q8N3X1 1017 aaPredicted RBP11.35□□□□□ -0.59
CDH3-209ENST00000569080 NWD2Q9ULI1 1742 aa11.34□□□□□ -0.59
CDH3-209ENST00000569080 ARHGEF10O15013 1369 aa11.33□□□□□ -0.6
CDH3-209ENST00000569080 NRAPQ86VF7 1730 aa11.33□□□□□ -0.6
CDH3-209ENST00000569080 RXRBP28702 533 aa11.33□□□□□ -0.6
CDH3-209ENST00000569080 PMFBP1Q8TBY8 1022 aa11.33□□□□□ -0.6
CDH3-209ENST00000569080 PHRF1Q9P1Y6 1649 aaKnown RBP11.33□□□□□ -0.6
CDH3-209ENST00000569080 GLI3P10071 1580 aa11.33□□□□□ -0.6
CDH3-209ENST00000569080 POLR3AO14802 1390 aaPredicted RBP11.32□□□□□ -0.6
CDH3-209ENST00000569080 GPRASP1Q5JY77 1395 aa11.32□□□□□ -0.6
CDH3-209ENST00000569080 NGLY1Q96IV0 654 aa11.32□□□□□ -0.6
CDH3-209ENST00000569080 RBM6P78332 1123 aaKnown RBP11.31□□□□□ -0.6
CDH3-209ENST00000569080 QTRT2Q9H974 415 aaKnown RBP11.31□□□□□ -0.6
CDH3-209ENST00000569080 USP21Q9UK80 565 aa11.31□□□□□ -0.6
CDH3-209ENST00000569080 CENPJQ9HC77 1338 aaPredicted RBP11.31□□□□□ -0.6
CDH3-209ENST00000569080 PSME1Q06323 249 aa11.3□□□□□ -0.6
CDH3-209ENST00000569080 NUDT16Q96DE0 195 aaKnown RBP11.3□□□□□ -0.6
CDH3-209ENST00000569080 RALGAPBQ86X10 1494 aa11.3□□□□□ -0.6
CDH3-209ENST00000569080 NRKQ7Z2Y5 1582 aa11.29□□□□□ -0.6
CDH3-209ENST00000569080 TRIM26Q12899 539 aaPredicted RBP11.29□□□□□ -0.6
CDH3-209ENST00000569080 NBPF8Q3BBV2 869 aa11.29□□□□□ -0.6
CDH3-209ENST00000569080 CABLES1Q8TDN4 633 aa11.29□□□□□ -0.6
CDH3-209ENST00000569080 CDK19Q9BWU1 502 aa11.29□□□□□ -0.6
CDH3-209ENST00000569080 TRPC5Q9UL62 973 aaPredicted RBP11.29□□□□□ -0.6
CDH3-209ENST00000569080 ROCK2O75116 1388 aaKnown RBP11.28□□□□□ -0.6
CDH3-209ENST00000569080 COL14A1Q05707 1796 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms