RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 ORAI2Q96SN7 254 aa20.73■□□□□ 0.91
CLN3-235ENST00000568497 GJD4Q96KN9 370 aaPredicted RBP20.72■□□□□ 0.91
CLN3-235ENST00000568497 BCL9LQ86UU0 1499 aa20.72■□□□□ 0.91
CLN3-235ENST00000568497 COL22A1Q8NFW1 1626 aaPredicted RBP20.71■□□□□ 0.91
CLN3-235ENST00000568497 RAB3GAP2Q9H2M9 1393 aa20.7■□□□□ 0.9
CLN3-235ENST00000568497 MARF1Q9Y4F3 1742 aaKnown RBP20.68■□□□□ 0.9
CLN3-235ENST00000568497 SLC4A1APQ9BWU0 796 aaKnown RBP20.68■□□□□ 0.9
CLN3-235ENST00000568497 MYOM2P54296 1465 aa20.68■□□□□ 0.9
CLN3-235ENST00000568497 PSDA5PKW4 1024 aaPredicted RBP20.66■□□□□ 0.9
CLN3-235ENST00000568497 RALGAPBQ86X10 1494 aa20.64■□□□□ 0.89
CLN3-235ENST00000568497 BRWD3Q6RI45 1802 aa20.63■□□□□ 0.89
CLN3-235ENST00000568497 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.63■□□□□ 0.89
CLN3-235ENST00000568497 GLI3P10071 1580 aa20.63■□□□□ 0.89
CLN3-235ENST00000568497 NPHP3Q7Z494 1330 aa20.62■□□□□ 0.89
CLN3-235ENST00000568497 MPHOSPH9Q99550 1183 aa20.62■□□□□ 0.89
CLN3-235ENST00000568497 XPCQ01831 940 aaPredicted RBP20.61■□□□□ 0.89
CLN3-235ENST00000568497 ESCO1Q5FWF5 840 aa20.6■□□□□ 0.89
CLN3-235ENST00000568497 UNC5CLQ8IV45 518 aa20.6■□□□□ 0.89
CLN3-235ENST00000568497 SPHKAPQ2M3C7 1700 aa20.6■□□□□ 0.89
CLN3-235ENST00000568497 HRCP23327 699 aa20.59■□□□□ 0.89
CLN3-235ENST00000568497 ROBO2Q9HCK4 1378 aa20.59■□□□□ 0.89
CLN3-235ENST00000568497 NEXMIFQ5QGS0 1516 aa20.58■□□□□ 0.88
CLN3-235ENST00000568497 CLTCL1P53675 1640 aa20.57■□□□□ 0.88
CLN3-235ENST00000568497 PRAG1Q86YV5 1406 aa20.57■□□□□ 0.88
CLN3-235ENST00000568497 SEPT12Q8IYM1 358 aa20.57■□□□□ 0.88
CLN3-235ENST00000568497 PXDNQ92626 1479 aa20.56■□□□□ 0.88
CLN3-235ENST00000568497 BAG6P46379 1132 aa20.56■□□□□ 0.88
CLN3-235ENST00000568497 CCDC9Q9Y3X0 531 aaKnown RBP20.56■□□□□ 0.88
CLN3-235ENST00000568497 FOXO3O43524 673 aa20.55■□□□□ 0.88
CLN3-235ENST00000568497 SLIT2O94813 1529 aa20.54■□□□□ 0.88
CLN3-235ENST00000568497 A0A0G2JS52 829 aa20.54■□□□□ 0.88
CLN3-235ENST00000568497 MYT1Q01538 1121 aa20.54■□□□□ 0.88
CLN3-235ENST00000568497 KRT27Q7Z3Y8 459 aa20.53■□□□□ 0.88
CLN3-235ENST00000568497 HAP1P54257 671 aaPredicted RBP20.52■□□□□ 0.88
CLN3-235ENST00000568497 LRPPRCP42704 1394 aaKnown RBP20.51■□□□□ 0.87
CLN3-235ENST00000568497 USP32Q8NFA0 1604 aa20.5■□□□□ 0.87
CLN3-235ENST00000568497 NUTM2FA1L443 756 aa20.5■□□□□ 0.87
CLN3-235ENST00000568497 YY1P25490 414 aa20.49■□□□□ 0.87
CLN3-235ENST00000568497 CDC42BPGQ6DT37 1551 aa20.49■□□□□ 0.87
CLN3-235ENST00000568497 VGFO15240 615 aaPredicted RBP20.48■□□□□ 0.87
CLN3-235ENST00000568497 PLEKHG5O94827 1062 aa20.48■□□□□ 0.87
CLN3-235ENST00000568497 R3HDM1Q15032 1099 aaKnown RBP20.48■□□□□ 0.87
CLN3-235ENST00000568497 VPS72Q15906 364 aa20.47■□□□□ 0.87
CLN3-235ENST00000568497 KIF1BO60333 1816 aa20.47■□□□□ 0.87
CLN3-235ENST00000568497 TRIM26Q12899 539 aaPredicted RBP20.46■□□□□ 0.87
CLN3-235ENST00000568497 ONECUT3O60422 494 aaPredicted RBP20.45■□□□□ 0.86
CLN3-235ENST00000568497 EN1Q05925 392 aaPredicted RBP20.45■□□□□ 0.86
CLN3-235ENST00000568497 RGL3Q3MIN7 710 aa20.45■□□□□ 0.86
CLN3-235ENST00000568497 PLCH1Q4KWH8 1693 aa20.45■□□□□ 0.86
CLN3-235ENST00000568497 SPATA31A3Q5VYP0 1347 aa20.43■□□□□ 0.86
CLN3-235ENST00000568497 RGPD1P0DJD0 1748 aa20.41■□□□□ 0.86
CLN3-235ENST00000568497 NWD2Q9ULI1 1742 aa20.41■□□□□ 0.86
CLN3-235ENST00000568497 CCDC144AA2RUR9 1427 aa20.4■□□□□ 0.86
CLN3-235ENST00000568497 RPGRIP1LQ68CZ1 1315 aa20.4■□□□□ 0.86
CLN3-235ENST00000568497 CABLES1Q8TDN4 633 aa20.4■□□□□ 0.86
CLN3-235ENST00000568497 FAM98CQ17RN3 349 aaKnown RBP20.38■□□□□ 0.85
CLN3-235ENST00000568497 KRT28Q7Z3Y7 464 aa20.38■□□□□ 0.85
CLN3-235ENST00000568497 KIF1AQ12756 1690 aa20.38■□□□□ 0.85
CLN3-235ENST00000568497 LMOD2Q6P5Q4 547 aa20.37■□□□□ 0.85
CLN3-235ENST00000568497 ANKRD30BQ9BXX2 1392 aa20.36■□□□□ 0.85
CLN3-235ENST00000568497 FAM182BQ5T319 152 aa20.36■□□□□ 0.85
CLN3-235ENST00000568497 TNS3Q68CZ2 1445 aa20.36■□□□□ 0.85
CLN3-235ENST00000568497 PCGF6Q9BYE7 350 aa20.35■□□□□ 0.85
CLN3-235ENST00000568497 STK26Q9P289 416 aa20.34■□□□□ 0.85
CLN3-235ENST00000568497 EZH2Q15910 746 aaKnown RBP20.33■□□□□ 0.85
CLN3-235ENST00000568497 WAPLQ7Z5K2 1190 aa20.33■□□□□ 0.85
CLN3-235ENST00000568497 SPATA31E1Q6ZUB1 1445 aa20.33■□□□□ 0.84
CLN3-235ENST00000568497 ABCA3Q99758 1704 aa20.33■□□□□ 0.84
CLN3-235ENST00000568497 TECPR2O15040 1411 aa20.32■□□□□ 0.84
CLN3-235ENST00000568497 FMN2Q9NZ56 1722 aa20.32■□□□□ 0.84
CLN3-235ENST00000568497 ADGRF5Q8IZF2 1346 aa20.31■□□□□ 0.84
CLN3-235ENST00000568497 DCAF8L1A6NGE4 600 aa20.31■□□□□ 0.84
CLN3-235ENST00000568497 PSME1Q06323 249 aa20.31■□□□□ 0.84
CLN3-235ENST00000568497 PPLO60437 1756 aa20.31■□□□□ 0.84
CLN3-235ENST00000568497 TNS1Q9HBL0 1735 aaKnown RBP20.3■□□□□ 0.84
CLN3-235ENST00000568497 ADGRB2O60241 1585 aa20.29■□□□□ 0.84
CLN3-235ENST00000568497 DISP2A7MBM2 1401 aa20.29■□□□□ 0.84
CLN3-235ENST00000568497 FAM83GA6ND36 823 aa20.29■□□□□ 0.84
CLN3-235ENST00000568497 SIN3AQ96ST3 1273 aa20.29■□□□□ 0.84
CLN3-235ENST00000568497 NRAPQ86VF7 1730 aa20.29■□□□□ 0.84
CLN3-235ENST00000568497 BTG4Q9NY30 223 aa20.28■□□□□ 0.84
CLN3-235ENST00000568497 PPP1R1BQ9UD71 204 aaPredicted RBP20.28■□□□□ 0.84
CLN3-235ENST00000568497 ARHGEF10O15013 1369 aa20.27■□□□□ 0.84
CLN3-235ENST00000568497 ABCC11Q96J66 1382 aa20.27■□□□□ 0.84
CLN3-235ENST00000568497 PLEKHH1Q9ULM0 1364 aa20.27■□□□□ 0.84
CLN3-235ENST00000568497 PHF8Q9UPP1 1060 aa20.27■□□□□ 0.84
CLN3-235ENST00000568497 KDM2AQ9Y2K7 1162 aa20.27■□□□□ 0.84
CLN3-235ENST00000568497 SBNO1A3KN83 1393 aa20.26■□□□□ 0.83
CLN3-235ENST00000568497 DHX57Q6P158 1386 aaKnown RBP20.25■□□□□ 0.83
CLN3-235ENST00000568497 RGPD8O14715 1765 aaPredicted RBP20.25■□□□□ 0.83
CLN3-235ENST00000568497 NEUROD1Q13562 356 aa20.24■□□□□ 0.83
CLN3-235ENST00000568497 TRIM37O94972 964 aa20.23■□□□□ 0.83
CLN3-235ENST00000568497 KNDC1Q76NI1 1749 aa20.23■□□□□ 0.83
CLN3-235ENST00000568497 CAMKK2Q96RR4 588 aa20.23■□□□□ 0.83
CLN3-235ENST00000568497 IFT172Q9UG01 1749 aa20.22■□□□□ 0.83
CLN3-235ENST00000568497 ACIN1Q9UKV3 1341 aaKnown RBP20.22■□□□□ 0.83
CLN3-235ENST00000568497 APBA3O96018 575 aa20.21■□□□□ 0.83
CLN3-235ENST00000568497 TMEM132EQ6IEE7 984 aa20.21■□□□□ 0.83
CLN3-235ENST00000568497 COL14A1Q05707 1796 aaKnown RBP20.21■□□□□ 0.83
CLN3-235ENST00000568497 SIRT1Q96EB6 747 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms