RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 CDC42BPGQ6DT37 1551 aa27.14■■□□□ 1.94
CLN3-227ENST00000567495 KNDC1Q76NI1 1749 aa27.13■■□□□ 1.93
CLN3-227ENST00000567495 PLEKHH1Q9ULM0 1364 aa27.13■■□□□ 1.93
CLN3-227ENST00000567495 TRIM26Q12899 539 aaPredicted RBP27.12■■□□□ 1.93
CLN3-227ENST00000567495 ORAI2Q96SN7 254 aa27.12■■□□□ 1.93
CLN3-227ENST00000567495 PRAM1Q96QH2 718 aa27.11■■□□□ 1.93
CLN3-227ENST00000567495 POGKQ9P215 609 aa27.11■■□□□ 1.93
CLN3-227ENST00000567495 ESCO1Q5FWF5 840 aa27.1■■□□□ 1.93
CLN3-227ENST00000567495 DLC1Q96QB1 1528 aa27.09■■□□□ 1.93
CLN3-227ENST00000567495 ADGRB1O14514 1584 aa27.09■■□□□ 1.93
CLN3-227ENST00000567495 SOCS7O14512 581 aa27.08■■□□□ 1.93
CLN3-227ENST00000567495 SOS2Q07890 1332 aaPredicted RBP27.07■■□□□ 1.92
CLN3-227ENST00000567495 DDX17Q92841 729 aaKnown RBP27.06■■□□□ 1.92
CLN3-227ENST00000567495 TRAK1Q9UPV9 953 aa27.06■■□□□ 1.92
CLN3-227ENST00000567495 NPHP3Q7Z494 1330 aa27.06■■□□□ 1.92
CLN3-227ENST00000567495 NHSL1Q5SYE7 1610 aa27.05■■□□□ 1.92
CLN3-227ENST00000567495 RGS17Q9UGC6 210 aaPredicted RBP27.04■■□□□ 1.92
CLN3-227ENST00000567495 SAFB2Q14151 953 aaKnown RBP eCLIP27.03■■□□□ 1.92
CLN3-227ENST00000567495 MEX3CQ5U5Q3 659 aaKnown RBP27.02■■□□□ 1.92
CLN3-227ENST00000567495 NUTM2FA1L443 756 aa27.01■■□□□ 1.91
CLN3-227ENST00000567495 SHPRHQ149N8 1683 aa27.01■■□□□ 1.91
CLN3-227ENST00000567495 FOXO3O43524 673 aa26.99■■□□□ 1.91
CLN3-227ENST00000567495 PNPLA6Q8IY17 1366 aa26.98■■□□□ 1.91
CLN3-227ENST00000567495 L3MBTL2Q969R5 705 aa26.98■■□□□ 1.91
CLN3-227ENST00000567495 NUTM2BA6NNL0 878 aaPredicted RBP26.97■■□□□ 1.91
CLN3-227ENST00000567495 NUTM2EB1AL46 878 aaPredicted RBP26.97■■□□□ 1.91
CLN3-227ENST00000567495 NUTM2AQ8IVF1 878 aaPredicted RBP26.97■■□□□ 1.91
CLN3-227ENST00000567495 SIN3AQ96ST3 1273 aa26.97■■□□□ 1.91
CLN3-227ENST00000567495 EIF3AQ14152 1382 aaKnown RBP26.97■■□□□ 1.91
CLN3-227ENST00000567495 LRP6O75581 1613 aa26.96■■□□□ 1.91
CLN3-227ENST00000567495 ANKARQ7Z5J8 1434 aa26.94■■□□□ 1.9
CLN3-227ENST00000567495 NEUROD1Q13562 356 aa26.94■■□□□ 1.9
CLN3-227ENST00000567495 ZNF772Q68DY9 489 aaPredicted RBP26.93■■□□□ 1.9
CLN3-227ENST00000567495 PHF8Q9UPP1 1060 aa26.93■■□□□ 1.9
CLN3-227ENST00000567495 FMN2Q9NZ56 1722 aa26.93■■□□□ 1.9
CLN3-227ENST00000567495 MINK1Q8N4C8 1332 aaPredicted RBP26.92■■□□□ 1.9
CLN3-227ENST00000567495 POTEAQ6S8J7 498 aa26.91■■□□□ 1.9
CLN3-227ENST00000567495 HIRIP3Q9BW71 556 aaPredicted RBP26.91■■□□□ 1.9
CLN3-227ENST00000567495 ADGRB2O60241 1585 aa26.91■■□□□ 1.9
CLN3-227ENST00000567495 PXDNQ92626 1479 aa26.9■■□□□ 1.9
CLN3-227ENST00000567495 WASLO00401 505 aaPredicted RBP26.9■■□□□ 1.9
CLN3-227ENST00000567495 KIAA1210Q9ULL0 1709 aa26.9■■□□□ 1.9
CLN3-227ENST00000567495 NBPF1Q3BBV0 1214 aa26.89■■□□□ 1.9
CLN3-227ENST00000567495 XPCQ01831 940 aaPredicted RBP26.88■■□□□ 1.89
CLN3-227ENST00000567495 PSME1Q06323 249 aa26.88■■□□□ 1.89
CLN3-227ENST00000567495 KRT28Q7Z3Y7 464 aa26.87■■□□□ 1.89
CLN3-227ENST00000567495 KIF1AQ12756 1690 aa26.86■■□□□ 1.89
CLN3-227ENST00000567495 SPATA31A3Q5VYP0 1347 aa26.84■■□□□ 1.89
CLN3-227ENST00000567495 C8orf37Q96NL8 207 aa26.82■■□□□ 1.88
CLN3-227ENST00000567495 ADAMTS2O95450 1211 aa26.81■■□□□ 1.88
CLN3-227ENST00000567495 AFF2P51816 1311 aa26.81■■□□□ 1.88
CLN3-227ENST00000567495 TULP4Q9NRJ4 1543 aa26.8■■□□□ 1.88
CLN3-227ENST00000567495 NGLY1Q96IV0 654 aa26.8■■□□□ 1.88
CLN3-227ENST00000567495 PRR36Q9H6K5 1346 aa26.8■■□□□ 1.88
CLN3-227ENST00000567495 SBNO1A3KN83 1393 aa26.8■■□□□ 1.88
CLN3-227ENST00000567495 PMFBP1Q8TBY8 1022 aa26.79■■□□□ 1.88
CLN3-227ENST00000567495 CENPJQ9HC77 1338 aaPredicted RBP26.79■■□□□ 1.88
CLN3-227ENST00000567495 CDK19Q9BWU1 502 aa26.78■■□□□ 1.88
CLN3-227ENST00000567495 GPRASP1Q5JY77 1395 aa26.78■■□□□ 1.88
CLN3-227ENST00000567495 ARHGEF28Q8N1W1 1705 aaKnown RBP26.78■■□□□ 1.88
CLN3-227ENST00000567495 NUDT16Q96DE0 195 aaKnown RBP26.77■■□□□ 1.88
CLN3-227ENST00000567495 COL22A1Q8NFW1 1626 aaPredicted RBP26.76■■□□□ 1.87
CLN3-227ENST00000567495 TNS3Q68CZ2 1445 aa26.75■■□□□ 1.87
CLN3-227ENST00000567495 ARHGEF10O15013 1369 aa26.75■■□□□ 1.87
CLN3-227ENST00000567495 ROCK2O75116 1388 aaKnown RBP26.75■■□□□ 1.87
CLN3-227ENST00000567495 TONSLQ96HA7 1378 aa26.75■■□□□ 1.87
CLN3-227ENST00000567495 NGDNQ8NEJ9 315 aaKnown RBP26.75■■□□□ 1.87
CLN3-227ENST00000567495 RXRBP28702 533 aa26.74■■□□□ 1.87
CLN3-227ENST00000567495 USP32Q8NFA0 1604 aa26.73■■□□□ 1.87
CLN3-227ENST00000567495 FNBP4Q8N3X1 1017 aaPredicted RBP26.73■■□□□ 1.87
CLN3-227ENST00000567495 CCDC61Q9Y6R9 512 aa26.73■■□□□ 1.87
CLN3-227ENST00000567495 ATP7BP35670 1465 aa26.7■■□□□ 1.87
CLN3-227ENST00000567495 LMOD2Q6P5Q4 547 aa26.7■■□□□ 1.86
CLN3-227ENST00000567495 QTRT2Q9H974 415 aaKnown RBP26.7■■□□□ 1.86
CLN3-227ENST00000567495 RGPD8O14715 1765 aaPredicted RBP26.69■■□□□ 1.86
CLN3-227ENST00000567495 NBPF8Q3BBV2 869 aa26.69■■□□□ 1.86
CLN3-227ENST00000567495 HAP1P54257 671 aaPredicted RBP26.68■■□□□ 1.86
CLN3-227ENST00000567495 USP21Q9UK80 565 aa26.68■■□□□ 1.86
CLN3-227ENST00000567495 PLEKHG3A1L390 1219 aa26.67■■□□□ 1.86
CLN3-227ENST00000567495 RBM6P78332 1123 aaKnown RBP26.67■■□□□ 1.86
CLN3-227ENST00000567495 SRPK2P78362 688 aaKnown RBP26.67■■□□□ 1.86
CLN3-227ENST00000567495 TRPM1Q7Z4N2 1603 aa26.66■■□□□ 1.86
CLN3-227ENST00000567495 TRPC5Q9UL62 973 aaPredicted RBP26.65■■□□□ 1.86
CLN3-227ENST00000567495 CDK12Q9NYV4 1490 aaPredicted RBP26.64■■□□□ 1.86
CLN3-227ENST00000567495 EVC2Q86UK5 1308 aa26.64■■□□□ 1.85
CLN3-227ENST00000567495 POLR3AO14802 1390 aaPredicted RBP26.63■■□□□ 1.85
CLN3-227ENST00000567495 CARD11Q9BXL7 1154 aa26.62■■□□□ 1.85
CLN3-227ENST00000567495 PAK3O75914 559 aaPredicted RBP26.61■■□□□ 1.85
CLN3-227ENST00000567495 CABLES1Q8TDN4 633 aa26.61■■□□□ 1.85
CLN3-227ENST00000567495 ACEP12821 1306 aa26.61■■□□□ 1.85
CLN3-227ENST00000567495 CABP2Q9NPB3 220 aa26.6■■□□□ 1.85
CLN3-227ENST00000567495 CLSPNQ9HAW4 1339 aa26.59■■□□□ 1.85
CLN3-227ENST00000567495 ITSN1Q15811 1721 aa26.59■■□□□ 1.85
CLN3-227ENST00000567495 RALGAPBQ86X10 1494 aa26.57■■□□□ 1.84
CLN3-227ENST00000567495 ATRNO75882 1429 aa26.56■■□□□ 1.84
CLN3-227ENST00000567495 BCL9LQ86UU0 1499 aa26.56■■□□□ 1.84
CLN3-227ENST00000567495 UNC5CLQ8IV45 518 aa26.56■■□□□ 1.84
CLN3-227ENST00000567495 PPIP5K1Q6PFW1 1433 aa26.56■■□□□ 1.84
CLN3-227ENST00000567495 PCGF6Q9BYE7 350 aa26.55■■□□□ 1.84
CLN3-227ENST00000567495 BRD4O60885 1362 aaPredicted RBP26.55■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms