RNA–Protein interactions for RNA: ENST00000567023.5

COMMD4-216, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 926 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-216ENST00000567023 SIRT1Q96EB6 747 aa21.03■□□□□ 0.96
COMMD4-216ENST00000567023 STK26Q9P289 416 aa21.03■□□□□ 0.96
COMMD4-216ENST00000567023 SOS2Q07890 1332 aaPredicted RBP21.03■□□□□ 0.96
COMMD4-216ENST00000567023 CDC42BPGQ6DT37 1551 aa21.02■□□□□ 0.96
COMMD4-216ENST00000567023 MYOM2P54296 1465 aa21.02■□□□□ 0.96
COMMD4-216ENST00000567023 PNPLA6Q8IY17 1366 aa21.01■□□□□ 0.95
COMMD4-216ENST00000567023 WAPLQ7Z5K2 1190 aa21.01■□□□□ 0.95
COMMD4-216ENST00000567023 YTHDC2Q9H6S0 1430 aaKnown RBP21.01■□□□□ 0.95
COMMD4-216ENST00000567023 KNDC1Q76NI1 1749 aa21.01■□□□□ 0.95
COMMD4-216ENST00000567023 NUTM2BA6NNL0 878 aaPredicted RBP20.99■□□□□ 0.95
COMMD4-216ENST00000567023 NUTM2EB1AL46 878 aaPredicted RBP20.99■□□□□ 0.95
COMMD4-216ENST00000567023 NUTM2AQ8IVF1 878 aaPredicted RBP20.99■□□□□ 0.95
COMMD4-216ENST00000567023 PLEKHH1Q9ULM0 1364 aa20.97■□□□□ 0.95
COMMD4-216ENST00000567023 CFAP70Q5T0N1 1121 aa20.97■□□□□ 0.95
COMMD4-216ENST00000567023 DHX57Q6P158 1386 aaKnown RBP20.97■□□□□ 0.95
COMMD4-216ENST00000567023 ESCO1Q5FWF5 840 aa20.96■□□□□ 0.95
COMMD4-216ENST00000567023 NPHP3Q7Z494 1330 aa20.95■□□□□ 0.94
COMMD4-216ENST00000567023 STAC3Q96MF2 364 aa20.94■□□□□ 0.94
COMMD4-216ENST00000567023 AFF2P51816 1311 aa20.92■□□□□ 0.94
COMMD4-216ENST00000567023 PXDNQ92626 1479 aa20.9■□□□□ 0.94
COMMD4-216ENST00000567023 FOXO3O43524 673 aa20.9■□□□□ 0.94
COMMD4-216ENST00000567023 RXRBP28702 533 aa20.9■□□□□ 0.94
COMMD4-216ENST00000567023 C8orf37Q96NL8 207 aa20.9■□□□□ 0.94
COMMD4-216ENST00000567023 FMN2Q9NZ56 1722 aa20.89■□□□□ 0.93
COMMD4-216ENST00000567023 DLC1Q96QB1 1528 aa20.88■□□□□ 0.93
COMMD4-216ENST00000567023 NUTM2FA1L443 756 aa20.88■□□□□ 0.93
COMMD4-216ENST00000567023 DCAF11Q8TEB1 546 aa20.88■□□□□ 0.93
COMMD4-216ENST00000567023 COL22A1Q8NFW1 1626 aaPredicted RBP20.88■□□□□ 0.93
COMMD4-216ENST00000567023 ADGRB1O14514 1584 aa20.88■□□□□ 0.93
COMMD4-216ENST00000567023 PRAM1Q96QH2 718 aa20.87■□□□□ 0.93
COMMD4-216ENST00000567023 CDK12Q9NYV4 1490 aaPredicted RBP20.87■□□□□ 0.93
COMMD4-216ENST00000567023 ADAMTS2O95450 1211 aa20.86■□□□□ 0.93
COMMD4-216ENST00000567023 NGLY1Q96IV0 654 aa20.85■□□□□ 0.93
COMMD4-216ENST00000567023 KDM2AQ9Y2K7 1162 aa20.85■□□□□ 0.93
COMMD4-216ENST00000567023 FNBP4Q8N3X1 1017 aaPredicted RBP20.84■□□□□ 0.93
COMMD4-216ENST00000567023 QTRT2Q9H974 415 aaKnown RBP20.84■□□□□ 0.93
COMMD4-216ENST00000567023 KIF1AQ12756 1690 aa20.83■□□□□ 0.92
COMMD4-216ENST00000567023 RBM6P78332 1123 aaKnown RBP20.82■□□□□ 0.92
COMMD4-216ENST00000567023 XPCQ01831 940 aaPredicted RBP20.82■□□□□ 0.92
COMMD4-216ENST00000567023 POGKQ9P215 609 aa20.82■□□□□ 0.92
COMMD4-216ENST00000567023 SAFB2Q14151 953 aaKnown RBP eCLIP20.81■□□□□ 0.92
COMMD4-216ENST00000567023 TRAK1Q9UPV9 953 aa20.81■□□□□ 0.92
COMMD4-216ENST00000567023 SPATA31A3Q5VYP0 1347 aa20.8■□□□□ 0.92
COMMD4-216ENST00000567023 PHF8Q9UPP1 1060 aa20.8■□□□□ 0.92
COMMD4-216ENST00000567023 KRT28Q7Z3Y7 464 aa20.79■□□□□ 0.92
COMMD4-216ENST00000567023 USP21Q9UK80 565 aa20.79■□□□□ 0.92
COMMD4-216ENST00000567023 ADGRB2O60241 1585 aa20.79■□□□□ 0.92
COMMD4-216ENST00000567023 ANKARQ7Z5J8 1434 aa20.78■□□□□ 0.92
COMMD4-216ENST00000567023 RGPD8O14715 1765 aaPredicted RBP20.78■□□□□ 0.92
COMMD4-216ENST00000567023 PSME1Q06323 249 aa20.76■□□□□ 0.91
COMMD4-216ENST00000567023 UPF1Q92900 1129 aaKnown RBP eCLIP20.76■□□□□ 0.91
COMMD4-216ENST00000567023 TRPC5Q9UL62 973 aaPredicted RBP20.76■□□□□ 0.91
COMMD4-216ENST00000567023 SBNO1A3KN83 1393 aa20.74■□□□□ 0.91
COMMD4-216ENST00000567023 USP32Q8NFA0 1604 aa20.74■□□□□ 0.91
COMMD4-216ENST00000567023 RGS12O14924 1447 aa20.73■□□□□ 0.91
COMMD4-216ENST00000567023 BCL9LQ86UU0 1499 aa20.73■□□□□ 0.91
COMMD4-216ENST00000567023 MARF1Q9Y4F3 1742 aaKnown RBP20.73■□□□□ 0.91
COMMD4-216ENST00000567023 EIF3AQ14152 1382 aaKnown RBP20.72■□□□□ 0.91
COMMD4-216ENST00000567023 ATRNO75882 1429 aa20.72■□□□□ 0.91
COMMD4-216ENST00000567023 TNS3Q68CZ2 1445 aa20.72■□□□□ 0.91
COMMD4-216ENST00000567023 WASLO00401 505 aaPredicted RBP20.72■□□□□ 0.91
COMMD4-216ENST00000567023 HIRIP3Q9BW71 556 aaPredicted RBP20.72■□□□□ 0.91
COMMD4-216ENST00000567023 MINK1Q8N4C8 1332 aaPredicted RBP20.72■□□□□ 0.91
COMMD4-216ENST00000567023 PMFBP1Q8TBY8 1022 aa20.7■□□□□ 0.9
COMMD4-216ENST00000567023 TULP4Q9NRJ4 1543 aa20.69■□□□□ 0.9
COMMD4-216ENST00000567023 PRR36Q9H6K5 1346 aa20.69■□□□□ 0.9
COMMD4-216ENST00000567023 ARHGEF10O15013 1369 aa20.69■□□□□ 0.9
COMMD4-216ENST00000567023 KIAA1210Q9ULL0 1709 aa20.68■□□□□ 0.9
COMMD4-216ENST00000567023 ARHGEF28Q8N1W1 1705 aaKnown RBP20.67■□□□□ 0.9
COMMD4-216ENST00000567023 SLIT2O94813 1529 aa20.67■□□□□ 0.9
COMMD4-216ENST00000567023 UNC5CLQ8IV45 518 aa20.65■□□□□ 0.9
COMMD4-216ENST00000567023 GJD4Q96KN9 370 aaPredicted RBP20.65■□□□□ 0.9
COMMD4-216ENST00000567023 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.64■□□□□ 0.9
COMMD4-216ENST00000567023 GPRASP1Q5JY77 1395 aa20.64■□□□□ 0.89
COMMD4-216ENST00000567023 EP400Q96L91 3159 aa20.63■□□□□ 0.89
COMMD4-216ENST00000567023 NBPF1Q3BBV0 1214 aa20.63■□□□□ 0.89
COMMD4-216ENST00000567023 CABLES1Q8TDN4 633 aa20.63■□□□□ 0.89
COMMD4-216ENST00000567023 TRPM3Q9HCF6 1732 aaPredicted RBP20.62■□□□□ 0.89
COMMD4-216ENST00000567023 LMOD2Q6P5Q4 547 aa20.62■□□□□ 0.89
COMMD4-216ENST00000567023 HAP1P54257 671 aaPredicted RBP20.61■□□□□ 0.89
COMMD4-216ENST00000567023 NUDT16Q96DE0 195 aaKnown RBP20.61■□□□□ 0.89
COMMD4-216ENST00000567023 ATP7BP35670 1465 aa20.61■□□□□ 0.89
COMMD4-216ENST00000567023 NGDNQ8NEJ9 315 aaKnown RBP20.6■□□□□ 0.89
COMMD4-216ENST00000567023 CDK19Q9BWU1 502 aa20.6■□□□□ 0.89
COMMD4-216ENST00000567023 ATAD2Q6PL18 1390 aa20.59■□□□□ 0.89
COMMD4-216ENST00000567023 ALS2Q96Q42 1657 aa20.59■□□□□ 0.89
COMMD4-216ENST00000567023 L3MBTL2Q969R5 705 aa20.59■□□□□ 0.89
COMMD4-216ENST00000567023 ABCA3Q99758 1704 aa20.58■□□□□ 0.89
COMMD4-216ENST00000567023 FAM83GA6ND36 823 aa20.57■□□□□ 0.88
COMMD4-216ENST00000567023 ITSN1Q15811 1721 aa20.57■□□□□ 0.88
COMMD4-216ENST00000567023 CCDC61Q9Y6R9 512 aa20.57■□□□□ 0.88
COMMD4-216ENST00000567023 RALGAPBQ86X10 1494 aa20.56■□□□□ 0.88
COMMD4-216ENST00000567023 NWD2Q9ULI1 1742 aa20.56■□□□□ 0.88
COMMD4-216ENST00000567023 VPS72Q15906 364 aa20.56■□□□□ 0.88
COMMD4-216ENST00000567023 GLI3P10071 1580 aa20.55■□□□□ 0.88
COMMD4-216ENST00000567023 PLEKHG3A1L390 1219 aa20.55■□□□□ 0.88
COMMD4-216ENST00000567023 SIN3AQ96ST3 1273 aa20.55■□□□□ 0.88
COMMD4-216ENST00000567023 POLR3AO14802 1390 aaPredicted RBP20.55■□□□□ 0.88
COMMD4-216ENST00000567023 ONECUT3O60422 494 aaPredicted RBP20.53■□□□□ 0.88
COMMD4-216ENST00000567023 PLEKHG5O94827 1062 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms