RNA–Protein interactions for RNA: ENST00000566723.1

SMPD3-208, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-208ENST00000566723 ZNF772Q68DY9 489 aaPredicted RBP22.5■■□□□ 1.19
SMPD3-208ENST00000566723 NUTM2AQ8IVF1 878 aaPredicted RBP22.5■■□□□ 1.19
SMPD3-208ENST00000566723 ABCC11Q96J66 1382 aa22.5■■□□□ 1.19
SMPD3-208ENST00000566723 ORAI2Q96SN7 254 aa22.49■■□□□ 1.19
SMPD3-208ENST00000566723 YTHDC2Q9H6S0 1430 aaKnown RBP22.48■■□□□ 1.19
SMPD3-208ENST00000566723 STK26Q9P289 416 aa22.48■■□□□ 1.19
SMPD3-208ENST00000566723 FMN2Q9NZ56 1722 aa22.48■■□□□ 1.19
SMPD3-208ENST00000566723 SOS2Q07890 1332 aaPredicted RBP22.47■■□□□ 1.19
SMPD3-208ENST00000566723 TMEM132EQ6IEE7 984 aa22.46■■□□□ 1.19
SMPD3-208ENST00000566723 COL22A1Q8NFW1 1626 aaPredicted RBP22.45■■□□□ 1.18
SMPD3-208ENST00000566723 WAPLQ7Z5K2 1190 aa22.44■■□□□ 1.18
SMPD3-208ENST00000566723 PLEKHH1Q9ULM0 1364 aa22.44■■□□□ 1.18
SMPD3-208ENST00000566723 C14orf93Q9H972 538 aaKnown RBP22.43■■□□□ 1.18
SMPD3-208ENST00000566723 KIF1AQ12756 1690 aa22.42■■□□□ 1.18
SMPD3-208ENST00000566723 AFF2P51816 1311 aa22.42■■□□□ 1.18
SMPD3-208ENST00000566723 PXDNQ92626 1479 aa22.41■■□□□ 1.18
SMPD3-208ENST00000566723 NPHP3Q7Z494 1330 aa22.4■■□□□ 1.18
SMPD3-208ENST00000566723 ESCO1Q5FWF5 840 aa22.4■■□□□ 1.18
SMPD3-208ENST00000566723 RGPD8O14715 1765 aaPredicted RBP22.4■■□□□ 1.18
SMPD3-208ENST00000566723 CDK12Q9NYV4 1490 aaPredicted RBP22.39■■□□□ 1.17
SMPD3-208ENST00000566723 DHX57Q6P158 1386 aaKnown RBP22.38■■□□□ 1.17
SMPD3-208ENST00000566723 MARF1Q9Y4F3 1742 aaKnown RBP22.38■■□□□ 1.17
SMPD3-208ENST00000566723 CFAP70Q5T0N1 1121 aa22.38■■□□□ 1.17
SMPD3-208ENST00000566723 C8orf37Q96NL8 207 aa22.38■■□□□ 1.17
SMPD3-208ENST00000566723 DLC1Q96QB1 1528 aa22.37■■□□□ 1.17
SMPD3-208ENST00000566723 SIRT1Q96EB6 747 aa22.37■■□□□ 1.17
SMPD3-208ENST00000566723 HRCP23327 699 aa22.36■■□□□ 1.17
SMPD3-208ENST00000566723 RXRBP28702 533 aa22.36■■□□□ 1.17
SMPD3-208ENST00000566723 ADGRB1O14514 1584 aa22.36■■□□□ 1.17
SMPD3-208ENST00000566723 NUTM2FA1L443 756 aa22.35■■□□□ 1.17
SMPD3-208ENST00000566723 ADAMTS2O95450 1211 aa22.34■■□□□ 1.17
SMPD3-208ENST00000566723 ADGRB2O60241 1585 aa22.33■■□□□ 1.17
SMPD3-208ENST00000566723 FOXO3O43524 673 aa22.32■■□□□ 1.16
SMPD3-208ENST00000566723 XPCQ01831 940 aaPredicted RBP22.3■■□□□ 1.16
SMPD3-208ENST00000566723 NGLY1Q96IV0 654 aa22.3■■□□□ 1.16
SMPD3-208ENST00000566723 PRAM1Q96QH2 718 aa22.3■■□□□ 1.16
SMPD3-208ENST00000566723 RGS12O14924 1447 aa22.3■■□□□ 1.16
SMPD3-208ENST00000566723 USP32Q8NFA0 1604 aa22.28■■□□□ 1.16
SMPD3-208ENST00000566723 RBM6P78332 1123 aaKnown RBP22.27■■□□□ 1.16
SMPD3-208ENST00000566723 SAFB2Q14151 953 aaKnown RBP eCLIP22.27■■□□□ 1.16
SMPD3-208ENST00000566723 QTRT2Q9H974 415 aaKnown RBP22.27■■□□□ 1.16
SMPD3-208ENST00000566723 DCAF11Q8TEB1 546 aa22.26■■□□□ 1.15
SMPD3-208ENST00000566723 STAC3Q96MF2 364 aa22.26■■□□□ 1.15
SMPD3-208ENST00000566723 ARHGEF28Q8N1W1 1705 aaKnown RBP22.26■■□□□ 1.15
SMPD3-208ENST00000566723 ANKARQ7Z5J8 1434 aa22.25■■□□□ 1.15
SMPD3-208ENST00000566723 POGKQ9P215 609 aa22.25■■□□□ 1.15
SMPD3-208ENST00000566723 KDM2AQ9Y2K7 1162 aa22.25■■□□□ 1.15
SMPD3-208ENST00000566723 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.25■■□□□ 1.15
SMPD3-208ENST00000566723 FNBP4Q8N3X1 1017 aaPredicted RBP22.24■■□□□ 1.15
SMPD3-208ENST00000566723 USP21Q9UK80 565 aa22.24■■□□□ 1.15
SMPD3-208ENST00000566723 SPATA31A3Q5VYP0 1347 aa22.24■■□□□ 1.15
SMPD3-208ENST00000566723 ABCA3Q99758 1704 aa22.23■■□□□ 1.15
SMPD3-208ENST00000566723 UPF1Q92900 1129 aaKnown RBP eCLIP22.23■■□□□ 1.15
SMPD3-208ENST00000566723 PHF8Q9UPP1 1060 aa22.23■■□□□ 1.15
SMPD3-208ENST00000566723 ATRNO75882 1429 aa22.23■■□□□ 1.15
SMPD3-208ENST00000566723 TNS3Q68CZ2 1445 aa22.23■■□□□ 1.15
SMPD3-208ENST00000566723 KIAA1210Q9ULL0 1709 aa22.21■■□□□ 1.15
SMPD3-208ENST00000566723 KRT28Q7Z3Y7 464 aa22.21■■□□□ 1.15
SMPD3-208ENST00000566723 TRPC5Q9UL62 973 aaPredicted RBP22.21■■□□□ 1.15
SMPD3-208ENST00000566723 TRAK1Q9UPV9 953 aa22.21■■□□□ 1.15
SMPD3-208ENST00000566723 TULP4Q9NRJ4 1543 aa22.2■■□□□ 1.14
SMPD3-208ENST00000566723 EIF3AQ14152 1382 aaKnown RBP22.19■■□□□ 1.14
SMPD3-208ENST00000566723 BCL9LQ86UU0 1499 aa22.19■■□□□ 1.14
SMPD3-208ENST00000566723 TRPM3Q9HCF6 1732 aaPredicted RBP22.18■■□□□ 1.14
SMPD3-208ENST00000566723 SBNO1A3KN83 1393 aa22.18■■□□□ 1.14
SMPD3-208ENST00000566723 ITSN1Q15811 1721 aa22.17■■□□□ 1.14
SMPD3-208ENST00000566723 MINK1Q8N4C8 1332 aaPredicted RBP22.16■■□□□ 1.14
SMPD3-208ENST00000566723 PSME1Q06323 249 aa22.16■■□□□ 1.14
SMPD3-208ENST00000566723 HIRIP3Q9BW71 556 aaPredicted RBP22.16■■□□□ 1.14
SMPD3-208ENST00000566723 PLCH1Q4KWH8 1693 aa22.15■■□□□ 1.14
SMPD3-208ENST00000566723 SLIT2O94813 1529 aa22.15■■□□□ 1.14
SMPD3-208ENST00000566723 ARHGEF10O15013 1369 aa22.14■■□□□ 1.14
SMPD3-208ENST00000566723 ALS2Q96Q42 1657 aa22.14■■□□□ 1.14
SMPD3-208ENST00000566723 NWD2Q9ULI1 1742 aa22.14■■□□□ 1.13
SMPD3-208ENST00000566723 PRR36Q9H6K5 1346 aa22.12■■□□□ 1.13
SMPD3-208ENST00000566723 PMFBP1Q8TBY8 1022 aa22.12■■□□□ 1.13
SMPD3-208ENST00000566723 EP400Q96L91 3159 aa22.12■■□□□ 1.13
SMPD3-208ENST00000566723 WASLO00401 505 aaPredicted RBP22.11■■□□□ 1.13
SMPD3-208ENST00000566723 ATAD2Q6PL18 1390 aa22.1■■□□□ 1.13
SMPD3-208ENST00000566723 ATP7BP35670 1465 aa22.09■■□□□ 1.13
SMPD3-208ENST00000566723 GLI3P10071 1580 aa22.09■■□□□ 1.13
SMPD3-208ENST00000566723 HAP1P54257 671 aaPredicted RBP22.09■■□□□ 1.13
SMPD3-208ENST00000566723 TOPAZ1Q8N9V7 1692 aa22.08■■□□□ 1.13
SMPD3-208ENST00000566723 LMOD2Q6P5Q4 547 aa22.08■■□□□ 1.13
SMPD3-208ENST00000566723 UNC5CLQ8IV45 518 aa22.08■■□□□ 1.13
SMPD3-208ENST00000566723 GPRASP1Q5JY77 1395 aa22.08■■□□□ 1.12
SMPD3-208ENST00000566723 CRYBG1Q9Y4K1 1723 aa22.08■■□□□ 1.12
SMPD3-208ENST00000566723 CABLES1Q8TDN4 633 aa22.07■■□□□ 1.12
SMPD3-208ENST00000566723 GJD4Q96KN9 370 aaPredicted RBP22.07■■□□□ 1.12
SMPD3-208ENST00000566723 RALGAPBQ86X10 1494 aa22.07■■□□□ 1.12
SMPD3-208ENST00000566723 NRAPQ86VF7 1730 aa22.05■■□□□ 1.12
SMPD3-208ENST00000566723 BRWD3Q6RI45 1802 aa22.04■■□□□ 1.12
SMPD3-208ENST00000566723 PLEKHG5O94827 1062 aa22.04■■□□□ 1.12
SMPD3-208ENST00000566723 COL14A1Q05707 1796 aaKnown RBP22.02■■□□□ 1.12
SMPD3-208ENST00000566723 NGDNQ8NEJ9 315 aaKnown RBP22.01■■□□□ 1.11
SMPD3-208ENST00000566723 QRICH2Q9H0J4 1663 aa22.01■■□□□ 1.11
SMPD3-208ENST00000566723 NUDT16Q96DE0 195 aaKnown RBP22■■□□□ 1.11
SMPD3-208ENST00000566723 NBPF1Q3BBV0 1214 aa21.99■■□□□ 1.11
SMPD3-208ENST00000566723 PHRF1Q9P1Y6 1649 aaKnown RBP21.98■■□□□ 1.11
SMPD3-208ENST00000566723 VPS72Q15906 364 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms