RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 ORAI2Q96SN7 254 aa19.9■□□□□ 0.78
VPS9D1-204ENST00000565023 C14orf93Q9H972 538 aaKnown RBP19.9■□□□□ 0.78
VPS9D1-204ENST00000565023 NRXN1Q9ULB1 1477 aa19.9■□□□□ 0.78
VPS9D1-204ENST00000565023 TECPR2O15040 1411 aa19.88■□□□□ 0.77
VPS9D1-204ENST00000565023 ABCC11Q96J66 1382 aa19.88■□□□□ 0.77
VPS9D1-204ENST00000565023 TRIM26Q12899 539 aaPredicted RBP19.88■□□□□ 0.77
VPS9D1-204ENST00000565023 SAFB2Q14151 953 aaKnown RBP eCLIP19.88■□□□□ 0.77
VPS9D1-204ENST00000565023 SHPRHQ149N8 1683 aa19.87■□□□□ 0.77
VPS9D1-204ENST00000565023 DHX57Q6P158 1386 aaKnown RBP19.87■□□□□ 0.77
VPS9D1-204ENST00000565023 NUTM2BA6NNL0 878 aaPredicted RBP19.87■□□□□ 0.77
VPS9D1-204ENST00000565023 NUTM2EB1AL46 878 aaPredicted RBP19.87■□□□□ 0.77
VPS9D1-204ENST00000565023 NUTM2AQ8IVF1 878 aaPredicted RBP19.87■□□□□ 0.77
VPS9D1-204ENST00000565023 MEX3CQ5U5Q3 659 aaKnown RBP19.86■□□□□ 0.77
VPS9D1-204ENST00000565023 CDC42BPGQ6DT37 1551 aa19.86■□□□□ 0.77
VPS9D1-204ENST00000565023 LRP6O75581 1613 aa19.84■□□□□ 0.77
VPS9D1-204ENST00000565023 ESCO1Q5FWF5 840 aa19.84■□□□□ 0.77
VPS9D1-204ENST00000565023 SPATA31A6Q5VVP1 1343 aa19.82■□□□□ 0.76
VPS9D1-204ENST00000565023 PRAM1Q96QH2 718 aa19.82■□□□□ 0.76
VPS9D1-204ENST00000565023 POGKQ9P215 609 aa19.82■□□□□ 0.76
VPS9D1-204ENST00000565023 TRAK1Q9UPV9 953 aa19.82■□□□□ 0.76
VPS9D1-204ENST00000565023 LRRC59Q96AG4 307 aaKnown RBP19.81■□□□□ 0.76
VPS9D1-204ENST00000565023 FMN2Q9NZ56 1722 aa19.81■□□□□ 0.76
VPS9D1-204ENST00000565023 RGPD8O14715 1765 aaPredicted RBP19.8■□□□□ 0.76
VPS9D1-204ENST00000565023 XPCQ01831 940 aaPredicted RBP19.79■□□□□ 0.76
VPS9D1-204ENST00000565023 ADGRB1O14514 1584 aa19.78■□□□□ 0.76
VPS9D1-204ENST00000565023 PNPLA6Q8IY17 1366 aa19.77■□□□□ 0.76
VPS9D1-204ENST00000565023 FOXO3O43524 673 aa19.76■□□□□ 0.75
VPS9D1-204ENST00000565023 SIRT1Q96EB6 747 aa19.76■□□□□ 0.75
VPS9D1-204ENST00000565023 DLC1Q96QB1 1528 aa19.76■□□□□ 0.75
VPS9D1-204ENST00000565023 SIN3AQ96ST3 1273 aa19.75■□□□□ 0.75
VPS9D1-204ENST00000565023 HIRIP3Q9BW71 556 aaPredicted RBP19.75■□□□□ 0.75
VPS9D1-204ENST00000565023 SOS2Q07890 1332 aaPredicted RBP19.75■□□□□ 0.75
VPS9D1-204ENST00000565023 MINK1Q8N4C8 1332 aaPredicted RBP19.75■□□□□ 0.75
VPS9D1-204ENST00000565023 NEUROD1Q13562 356 aa19.74■□□□□ 0.75
VPS9D1-204ENST00000565023 NPHP3Q7Z494 1330 aa19.74■□□□□ 0.75
VPS9D1-204ENST00000565023 STAC3Q96MF2 364 aa19.73■□□□□ 0.75
VPS9D1-204ENST00000565023 ADAMTS2O95450 1211 aa19.72■□□□□ 0.75
VPS9D1-204ENST00000565023 ARHGEF28Q8N1W1 1705 aaKnown RBP19.71■□□□□ 0.75
VPS9D1-204ENST00000565023 C8orf37Q96NL8 207 aa19.71■□□□□ 0.75
VPS9D1-204ENST00000565023 KIF1AQ12756 1690 aa19.71■□□□□ 0.75
VPS9D1-204ENST00000565023 PXDNQ92626 1479 aa19.69■□□□□ 0.74
VPS9D1-204ENST00000565023 PLEKHG5O94827 1062 aa19.69■□□□□ 0.74
VPS9D1-204ENST00000565023 ZNF772Q68DY9 489 aaPredicted RBP19.68■□□□□ 0.74
VPS9D1-204ENST00000565023 PMFBP1Q8TBY8 1022 aa19.68■□□□□ 0.74
VPS9D1-204ENST00000565023 UPF1Q92900 1129 aaKnown RBP eCLIP19.68■□□□□ 0.74
VPS9D1-204ENST00000565023 PHF8Q9UPP1 1060 aa19.68■□□□□ 0.74
VPS9D1-204ENST00000565023 AFF2P51816 1311 aa19.68■□□□□ 0.74
VPS9D1-204ENST00000565023 USP32Q8NFA0 1604 aa19.67■□□□□ 0.74
VPS9D1-204ENST00000565023 NBPF1Q3BBV0 1214 aa19.67■□□□□ 0.74
VPS9D1-204ENST00000565023 L3MBTL2Q969R5 705 aa19.67■□□□□ 0.74
VPS9D1-204ENST00000565023 KIAA1210Q9ULL0 1709 aa19.67■□□□□ 0.74
VPS9D1-204ENST00000565023 ADGRB2O60241 1585 aa19.66■□□□□ 0.74
VPS9D1-204ENST00000565023 KRT28Q7Z3Y7 464 aa19.66■□□□□ 0.74
VPS9D1-204ENST00000565023 NGLY1Q96IV0 654 aa19.65■□□□□ 0.74
VPS9D1-204ENST00000565023 COL22A1Q8NFW1 1626 aaPredicted RBP19.64■□□□□ 0.73
VPS9D1-204ENST00000565023 LMOD2Q6P5Q4 547 aa19.63■□□□□ 0.73
VPS9D1-204ENST00000565023 WASLO00401 505 aaPredicted RBP19.62■□□□□ 0.73
VPS9D1-204ENST00000565023 PSME1Q06323 249 aa19.62■□□□□ 0.73
VPS9D1-204ENST00000565023 ANKARQ7Z5J8 1434 aa19.61■□□□□ 0.73
VPS9D1-204ENST00000565023 PRR36Q9H6K5 1346 aa19.61■□□□□ 0.73
VPS9D1-204ENST00000565023 TULP4Q9NRJ4 1543 aa19.61■□□□□ 0.73
VPS9D1-204ENST00000565023 SPATA31A3Q5VYP0 1347 aa19.6■□□□□ 0.73
VPS9D1-204ENST00000565023 EIF3AQ14152 1382 aaKnown RBP19.59■□□□□ 0.73
VPS9D1-204ENST00000565023 RXRBP28702 533 aa19.59■□□□□ 0.73
VPS9D1-204ENST00000565023 MARF1Q9Y4F3 1742 aaKnown RBP19.59■□□□□ 0.73
VPS9D1-204ENST00000565023 HAP1P54257 671 aaPredicted RBP19.58■□□□□ 0.72
VPS9D1-204ENST00000565023 PCGF6Q9BYE7 350 aa19.58■□□□□ 0.72
VPS9D1-204ENST00000565023 QTRT2Q9H974 415 aaKnown RBP19.57■□□□□ 0.72
VPS9D1-204ENST00000565023 TRPM1Q7Z4N2 1603 aa19.57■□□□□ 0.72
VPS9D1-204ENST00000565023 TNS3Q68CZ2 1445 aa19.57■□□□□ 0.72
VPS9D1-204ENST00000565023 ITSN1Q15811 1721 aa19.56■□□□□ 0.72
VPS9D1-204ENST00000565023 NGDNQ8NEJ9 315 aaKnown RBP19.56■□□□□ 0.72
VPS9D1-204ENST00000565023 CABLES1Q8TDN4 633 aa19.56■□□□□ 0.72
VPS9D1-204ENST00000565023 CDK19Q9BWU1 502 aa19.56■□□□□ 0.72
VPS9D1-204ENST00000565023 USP21Q9UK80 565 aa19.56■□□□□ 0.72
VPS9D1-204ENST00000565023 NUDT16Q96DE0 195 aaKnown RBP19.55■□□□□ 0.72
VPS9D1-204ENST00000565023 QRICH2Q9H0J4 1663 aa19.55■□□□□ 0.72
VPS9D1-204ENST00000565023 GPRASP1Q5JY77 1395 aa19.54■□□□□ 0.72
VPS9D1-204ENST00000565023 ATP7BP35670 1465 aa19.54■□□□□ 0.72
VPS9D1-204ENST00000565023 CENPJQ9HC77 1338 aaPredicted RBP19.53■□□□□ 0.72
VPS9D1-204ENST00000565023 TRPM3Q9HCF6 1732 aaPredicted RBP19.52■□□□□ 0.72
VPS9D1-204ENST00000565023 PAK3O75914 559 aaPredicted RBP19.52■□□□□ 0.72
VPS9D1-204ENST00000565023 SBNO1A3KN83 1393 aa19.52■□□□□ 0.72
VPS9D1-204ENST00000565023 ROCK2O75116 1388 aaKnown RBP19.52■□□□□ 0.72
VPS9D1-204ENST00000565023 SRPK2P78362 688 aaKnown RBP19.51■□□□□ 0.71
VPS9D1-204ENST00000565023 TONSLQ96HA7 1378 aa19.51■□□□□ 0.71
VPS9D1-204ENST00000565023 ABCA3Q99758 1704 aa19.51■□□□□ 0.71
VPS9D1-204ENST00000565023 RBM6P78332 1123 aaKnown RBP19.5■□□□□ 0.71
VPS9D1-204ENST00000565023 NBPF8Q3BBV2 869 aa19.5■□□□□ 0.71
VPS9D1-204ENST00000565023 CDK12Q9NYV4 1490 aaPredicted RBP19.49■□□□□ 0.71
VPS9D1-204ENST00000565023 ARHGEF10O15013 1369 aa19.49■□□□□ 0.71
VPS9D1-204ENST00000565023 FNBP4Q8N3X1 1017 aaPredicted RBP19.49■□□□□ 0.71
VPS9D1-204ENST00000565023 TOPAZ1Q8N9V7 1692 aa19.49■□□□□ 0.71
VPS9D1-204ENST00000565023 CABP2Q9NPB3 220 aa19.48■□□□□ 0.71
VPS9D1-204ENST00000565023 TRPC5Q9UL62 973 aaPredicted RBP19.48■□□□□ 0.71
VPS9D1-204ENST00000565023 ALS2Q96Q42 1657 aa19.48■□□□□ 0.71
VPS9D1-204ENST00000565023 RGS12O14924 1447 aa19.47■□□□□ 0.71
VPS9D1-204ENST00000565023 CCDC61Q9Y6R9 512 aa19.45■□□□□ 0.7
VPS9D1-204ENST00000565023 ACEP12821 1306 aa19.45■□□□□ 0.7
VPS9D1-204ENST00000565023 ATRNO75882 1429 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms