RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 MST1RQ04912 1400 aa19.39■□□□□ 0.69
CLK3-216ENST00000564468 WAPLQ7Z5K2 1190 aa19.36■□□□□ 0.69
CLK3-216ENST00000564468 KIAA1210Q9ULL0 1709 aa19.36■□□□□ 0.69
CLK3-216ENST00000564468 AHDC1Q5TGY3 1603 aaPredicted RBP19.36■□□□□ 0.69
CLK3-216ENST00000564468 CDC42BPGQ6DT37 1551 aa19.36■□□□□ 0.69
CLK3-216ENST00000564468 BRINP3Q76B58 766 aa19.35■□□□□ 0.69
CLK3-216ENST00000564468 DLC1Q96QB1 1528 aa19.35■□□□□ 0.69
CLK3-216ENST00000564468 ADGRB1O14514 1584 aa19.34■□□□□ 0.69
CLK3-216ENST00000564468 C1orf167Q5SNV9 1468 aa19.33■□□□□ 0.68
CLK3-216ENST00000564468 POGKQ9P215 609 aa19.32■□□□□ 0.68
CLK3-216ENST00000564468 COL16A1Q07092 1604 aaPredicted RBP19.32■□□□□ 0.68
CLK3-216ENST00000564468 NHSL1Q5SYE7 1610 aa19.32■□□□□ 0.68
CLK3-216ENST00000564468 NEUROD1Q13562 356 aa19.31■□□□□ 0.68
CLK3-216ENST00000564468 SIN3AQ96ST3 1273 aa19.31■□□□□ 0.68
CLK3-216ENST00000564468 RXRBP28702 533 aa19.3■□□□□ 0.68
CLK3-216ENST00000564468 UPF1Q92900 1129 aaKnown RBP eCLIP19.3■□□□□ 0.68
CLK3-216ENST00000564468 PLEKHH1Q9ULM0 1364 aa19.3■□□□□ 0.68
CLK3-216ENST00000564468 PRAM1Q96QH2 718 aa19.29■□□□□ 0.68
CLK3-216ENST00000564468 TRAK1Q9UPV9 953 aa19.29■□□□□ 0.68
CLK3-216ENST00000564468 L3MBTL2Q969R5 705 aa19.28■□□□□ 0.68
CLK3-216ENST00000564468 FMN2Q9NZ56 1722 aa19.28■□□□□ 0.68
CLK3-216ENST00000564468 SHPRHQ149N8 1683 aa19.26■□□□□ 0.67
CLK3-216ENST00000564468 ARHGEF28Q8N1W1 1705 aaKnown RBP19.25■□□□□ 0.67
CLK3-216ENST00000564468 SAFB2Q14151 953 aaKnown RBP eCLIP19.25■□□□□ 0.67
CLK3-216ENST00000564468 LRRC59Q96AG4 307 aaKnown RBP19.25■□□□□ 0.67
CLK3-216ENST00000564468 ORAI2Q96SN7 254 aa19.25■□□□□ 0.67
CLK3-216ENST00000564468 ESCO1Q5FWF5 840 aa19.24■□□□□ 0.67
CLK3-216ENST00000564468 RGPD8O14715 1765 aaPredicted RBP19.24■□□□□ 0.67
CLK3-216ENST00000564468 NUTM2BA6NNL0 878 aaPredicted RBP19.23■□□□□ 0.67
CLK3-216ENST00000564468 NUTM2EB1AL46 878 aaPredicted RBP19.23■□□□□ 0.67
CLK3-216ENST00000564468 NUTM2AQ8IVF1 878 aaPredicted RBP19.23■□□□□ 0.67
CLK3-216ENST00000564468 ADGRB2O60241 1585 aa19.23■□□□□ 0.67
CLK3-216ENST00000564468 KIF1AQ12756 1690 aa19.22■□□□□ 0.67
CLK3-216ENST00000564468 NPHP3Q7Z494 1330 aa19.22■□□□□ 0.67
CLK3-216ENST00000564468 LRP6O75581 1613 aa19.22■□□□□ 0.67
CLK3-216ENST00000564468 NUTM2FA1L443 756 aa19.21■□□□□ 0.67
CLK3-216ENST00000564468 EIF3AQ14152 1382 aaKnown RBP19.2■□□□□ 0.66
CLK3-216ENST00000564468 TONSLQ96HA7 1378 aa19.19■□□□□ 0.66
CLK3-216ENST00000564468 TRPM1Q7Z4N2 1603 aa19.19■□□□□ 0.66
CLK3-216ENST00000564468 NBPF1Q3BBV0 1214 aa19.19■□□□□ 0.66
CLK3-216ENST00000564468 SOS2Q07890 1332 aaPredicted RBP19.19■□□□□ 0.66
CLK3-216ENST00000564468 DDX17Q92841 729 aaKnown RBP19.18■□□□□ 0.66
CLK3-216ENST00000564468 PCGF6Q9BYE7 350 aa19.18■□□□□ 0.66
CLK3-216ENST00000564468 MINK1Q8N4C8 1332 aaPredicted RBP19.18■□□□□ 0.66
CLK3-216ENST00000564468 ANKARQ7Z5J8 1434 aa19.17■□□□□ 0.66
CLK3-216ENST00000564468 CDK12Q9NYV4 1490 aaPredicted RBP19.17■□□□□ 0.66
CLK3-216ENST00000564468 SRCAPQ6ZRS2 3230 aa19.17■□□□□ 0.66
CLK3-216ENST00000564468 AFF2P51816 1311 aa19.16■□□□□ 0.66
CLK3-216ENST00000564468 WASLO00401 505 aaPredicted RBP19.15■□□□□ 0.66
CLK3-216ENST00000564468 FOXO3O43524 673 aa19.15■□□□□ 0.66
CLK3-216ENST00000564468 HIRIP3Q9BW71 556 aaPredicted RBP19.15■□□□□ 0.66
CLK3-216ENST00000564468 PHF8Q9UPP1 1060 aa19.14■□□□□ 0.65
CLK3-216ENST00000564468 ITSN1Q15811 1721 aa19.14■□□□□ 0.65
CLK3-216ENST00000564468 RBM6P78332 1123 aaKnown RBP19.13■□□□□ 0.65
CLK3-216ENST00000564468 QTRT2Q9H974 415 aaKnown RBP19.13■□□□□ 0.65
CLK3-216ENST00000564468 ROCK2O75116 1388 aaKnown RBP19.13■□□□□ 0.65
CLK3-216ENST00000564468 TULP4Q9NRJ4 1543 aa19.13■□□□□ 0.65
CLK3-216ENST00000564468 USP32Q8NFA0 1604 aa19.12■□□□□ 0.65
CLK3-216ENST00000564468 PNPLA6Q8IY17 1366 aa19.12■□□□□ 0.65
CLK3-216ENST00000564468 C8orf37Q96NL8 207 aa19.12■□□□□ 0.65
CLK3-216ENST00000564468 PXDNQ92626 1479 aa19.11■□□□□ 0.65
CLK3-216ENST00000564468 CLSPNQ9HAW4 1339 aa19.11■□□□□ 0.65
CLK3-216ENST00000564468 CENPJQ9HC77 1338 aaPredicted RBP19.11■□□□□ 0.65
CLK3-216ENST00000564468 PSME1Q06323 249 aa19.11■□□□□ 0.65
CLK3-216ENST00000564468 NGLY1Q96IV0 654 aa19.11■□□□□ 0.65
CLK3-216ENST00000564468 QRICH2Q9H0J4 1663 aa19.1■□□□□ 0.65
CLK3-216ENST00000564468 KRT28Q7Z3Y7 464 aa19.09■□□□□ 0.65
CLK3-216ENST00000564468 COL22A1Q8NFW1 1626 aaPredicted RBP19.08■□□□□ 0.65
CLK3-216ENST00000564468 NBPF8Q3BBV2 869 aa19.08■□□□□ 0.64
CLK3-216ENST00000564468 XPCQ01831 940 aaPredicted RBP19.07■□□□□ 0.64
CLK3-216ENST00000564468 CDK19Q9BWU1 502 aa19.07■□□□□ 0.64
CLK3-216ENST00000564468 GPRASP1Q5JY77 1395 aa19.06■□□□□ 0.64
CLK3-216ENST00000564468 PMFBP1Q8TBY8 1022 aa19.06■□□□□ 0.64
CLK3-216ENST00000564468 NUDT16Q96DE0 195 aaKnown RBP19.06■□□□□ 0.64
CLK3-216ENST00000564468 PRR36Q9H6K5 1346 aa19.05■□□□□ 0.64
CLK3-216ENST00000564468 SPATA31A3Q5VYP0 1347 aa19.04■□□□□ 0.64
CLK3-216ENST00000564468 RALGAPBQ86X10 1494 aa19.04■□□□□ 0.64
CLK3-216ENST00000564468 CARD11Q9BXL7 1154 aa19.04■□□□□ 0.64
CLK3-216ENST00000564468 TIMELESSQ9UNS1 1208 aa19.04■□□□□ 0.64
CLK3-216ENST00000564468 SBNO1A3KN83 1393 aa19.04■□□□□ 0.64
CLK3-216ENST00000564468 ATP7BP35670 1465 aa19.03■□□□□ 0.64
CLK3-216ENST00000564468 ADAMTS2O95450 1211 aa19.03■□□□□ 0.64
CLK3-216ENST00000564468 NGDNQ8NEJ9 315 aaKnown RBP19.03■□□□□ 0.64
CLK3-216ENST00000564468 CCDC61Q9Y6R9 512 aa19.03■□□□□ 0.64
CLK3-216ENST00000564468 TNS3Q68CZ2 1445 aa19.02■□□□□ 0.64
CLK3-216ENST00000564468 SRPK2P78362 688 aaKnown RBP19.02■□□□□ 0.64
CLK3-216ENST00000564468 ATAD2Q6PL18 1390 aa19.02■□□□□ 0.64
CLK3-216ENST00000564468 MARF1Q9Y4F3 1742 aaKnown RBP19.02■□□□□ 0.63
CLK3-216ENST00000564468 TOPAZ1Q8N9V7 1692 aa19.01■□□□□ 0.63
CLK3-216ENST00000564468 ARHGEF10O15013 1369 aa19.01■□□□□ 0.63
CLK3-216ENST00000564468 EVC2Q86UK5 1308 aa19■□□□□ 0.63
CLK3-216ENST00000564468 RGS12O14924 1447 aa19■□□□□ 0.63
CLK3-216ENST00000564468 TRPC5Q9UL62 973 aaPredicted RBP19■□□□□ 0.63
CLK3-216ENST00000564468 USP21Q9UK80 565 aa18.99■□□□□ 0.63
CLK3-216ENST00000564468 TRPM3Q9HCF6 1732 aaPredicted RBP18.99■□□□□ 0.63
CLK3-216ENST00000564468 LMOD2Q6P5Q4 547 aa18.98■□□□□ 0.63
CLK3-216ENST00000564468 CCER1Q8TC90 406 aaPredicted RBP18.98■□□□□ 0.63
CLK3-216ENST00000564468 ZRANB1Q9UGI0 708 aa18.98■□□□□ 0.63
CLK3-216ENST00000564468 PLEKHG3A1L390 1219 aa18.97■□□□□ 0.63
CLK3-216ENST00000564468 SBNO2Q9Y2G9 1366 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms