RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 HRCP23327 699 aa25.49■■□□□ 1.67
VPS9D1-203ENST00000563798 KNDC1Q76NI1 1749 aa25.49■■□□□ 1.67
VPS9D1-203ENST00000563798 MYOM2P54296 1465 aa25.48■■□□□ 1.67
VPS9D1-203ENST00000563798 SIRT1Q96EB6 747 aa25.48■■□□□ 1.67
VPS9D1-203ENST00000563798 C14orf93Q9H972 538 aaKnown RBP25.48■■□□□ 1.67
VPS9D1-203ENST00000563798 NUTM2BA6NNL0 878 aaPredicted RBP25.46■■□□□ 1.67
VPS9D1-203ENST00000563798 NUTM2EB1AL46 878 aaPredicted RBP25.46■■□□□ 1.67
VPS9D1-203ENST00000563798 TMEM132EQ6IEE7 984 aa25.46■■□□□ 1.67
VPS9D1-203ENST00000563798 NUTM2AQ8IVF1 878 aaPredicted RBP25.46■■□□□ 1.67
VPS9D1-203ENST00000563798 YTHDC2Q9H6S0 1430 aaKnown RBP25.46■■□□□ 1.67
VPS9D1-203ENST00000563798 STK26Q9P289 416 aa25.45■■□□□ 1.66
VPS9D1-203ENST00000563798 WAPLQ7Z5K2 1190 aa25.44■■□□□ 1.66
VPS9D1-203ENST00000563798 PLEKHH1Q9ULM0 1364 aa25.41■■□□□ 1.66
VPS9D1-203ENST00000563798 NPHP3Q7Z494 1330 aa25.39■■□□□ 1.66
VPS9D1-203ENST00000563798 ESCO1Q5FWF5 840 aa25.39■■□□□ 1.66
VPS9D1-203ENST00000563798 AFF2P51816 1311 aa25.38■■□□□ 1.65
VPS9D1-203ENST00000563798 CFAP70Q5T0N1 1121 aa25.38■■□□□ 1.65
VPS9D1-203ENST00000563798 DHX57Q6P158 1386 aaKnown RBP25.38■■□□□ 1.65
VPS9D1-203ENST00000563798 CDK12Q9NYV4 1490 aaPredicted RBP25.37■■□□□ 1.65
VPS9D1-203ENST00000563798 PXDNQ92626 1479 aa25.36■■□□□ 1.65
VPS9D1-203ENST00000563798 RXRBP28702 533 aa25.36■■□□□ 1.65
VPS9D1-203ENST00000563798 COL22A1Q8NFW1 1626 aaPredicted RBP25.36■■□□□ 1.65
VPS9D1-203ENST00000563798 STAC3Q96MF2 364 aa25.35■■□□□ 1.65
VPS9D1-203ENST00000563798 FMN2Q9NZ56 1722 aa25.34■■□□□ 1.65
VPS9D1-203ENST00000563798 DLC1Q96QB1 1528 aa25.32■■□□□ 1.64
VPS9D1-203ENST00000563798 C8orf37Q96NL8 207 aa25.32■■□□□ 1.64
VPS9D1-203ENST00000563798 FOXO3O43524 673 aa25.31■■□□□ 1.64
VPS9D1-203ENST00000563798 ADGRB1O14514 1584 aa25.31■■□□□ 1.64
VPS9D1-203ENST00000563798 ADAMTS2O95450 1211 aa25.28■■□□□ 1.64
VPS9D1-203ENST00000563798 NGLY1Q96IV0 654 aa25.28■■□□□ 1.64
VPS9D1-203ENST00000563798 KIF1AQ12756 1690 aa25.28■■□□□ 1.64
VPS9D1-203ENST00000563798 NUTM2FA1L443 756 aa25.27■■□□□ 1.64
VPS9D1-203ENST00000563798 FNBP4Q8N3X1 1017 aaPredicted RBP25.27■■□□□ 1.64
VPS9D1-203ENST00000563798 PRAM1Q96QH2 718 aa25.27■■□□□ 1.64
VPS9D1-203ENST00000563798 QTRT2Q9H974 415 aaKnown RBP25.27■■□□□ 1.64
VPS9D1-203ENST00000563798 RBM6P78332 1123 aaKnown RBP25.26■■□□□ 1.63
VPS9D1-203ENST00000563798 DCAF11Q8TEB1 546 aa25.24■■□□□ 1.63
VPS9D1-203ENST00000563798 XPCQ01831 940 aaPredicted RBP25.23■■□□□ 1.63
VPS9D1-203ENST00000563798 ADGRB2O60241 1585 aa25.22■■□□□ 1.63
VPS9D1-203ENST00000563798 SPATA31A3Q5VYP0 1347 aa25.22■■□□□ 1.63
VPS9D1-203ENST00000563798 UPF1Q92900 1129 aaKnown RBP eCLIP25.22■■□□□ 1.63
VPS9D1-203ENST00000563798 PHF8Q9UPP1 1060 aa25.21■■□□□ 1.63
VPS9D1-203ENST00000563798 ANKARQ7Z5J8 1434 aa25.2■■□□□ 1.63
VPS9D1-203ENST00000563798 POGKQ9P215 609 aa25.2■■□□□ 1.62
VPS9D1-203ENST00000563798 USP21Q9UK80 565 aa25.2■■□□□ 1.62
VPS9D1-203ENST00000563798 KDM2AQ9Y2K7 1162 aa25.2■■□□□ 1.62
VPS9D1-203ENST00000563798 RGS12O14924 1447 aa25.2■■□□□ 1.62
VPS9D1-203ENST00000563798 KRT28Q7Z3Y7 464 aa25.19■■□□□ 1.62
VPS9D1-203ENST00000563798 TRPC5Q9UL62 973 aaPredicted RBP25.18■■□□□ 1.62
VPS9D1-203ENST00000563798 SAFB2Q14151 953 aaKnown RBP eCLIP25.17■■□□□ 1.62
VPS9D1-203ENST00000563798 TRAK1Q9UPV9 953 aa25.17■■□□□ 1.62
VPS9D1-203ENST00000563798 RGPD8O14715 1765 aaPredicted RBP25.17■■□□□ 1.62
VPS9D1-203ENST00000563798 ATRNO75882 1429 aa25.17■■□□□ 1.62
VPS9D1-203ENST00000563798 MARF1Q9Y4F3 1742 aaKnown RBP25.16■■□□□ 1.62
VPS9D1-203ENST00000563798 PSME1Q06323 249 aa25.15■■□□□ 1.62
VPS9D1-203ENST00000563798 SBNO1A3KN83 1393 aa25.15■■□□□ 1.62
VPS9D1-203ENST00000563798 USP32Q8NFA0 1604 aa25.15■■□□□ 1.62
VPS9D1-203ENST00000563798 BCL9LQ86UU0 1499 aa25.15■■□□□ 1.62
VPS9D1-203ENST00000563798 TNS3Q68CZ2 1445 aa25.13■■□□□ 1.61
VPS9D1-203ENST00000563798 EIF3AQ14152 1382 aaKnown RBP25.13■■□□□ 1.61
VPS9D1-203ENST00000563798 SLIT2O94813 1529 aa25.09■■□□□ 1.61
VPS9D1-203ENST00000563798 TULP4Q9NRJ4 1543 aa25.09■■□□□ 1.61
VPS9D1-203ENST00000563798 WASLO00401 505 aaPredicted RBP25.09■■□□□ 1.61
VPS9D1-203ENST00000563798 MINK1Q8N4C8 1332 aaPredicted RBP25.08■■□□□ 1.6
VPS9D1-203ENST00000563798 PRR36Q9H6K5 1346 aa25.08■■□□□ 1.6
VPS9D1-203ENST00000563798 ARHGEF10O15013 1369 aa25.07■■□□□ 1.6
VPS9D1-203ENST00000563798 HIRIP3Q9BW71 556 aaPredicted RBP25.07■■□□□ 1.6
VPS9D1-203ENST00000563798 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.06■■□□□ 1.6
VPS9D1-203ENST00000563798 KIAA1210Q9ULL0 1709 aa25.06■■□□□ 1.6
VPS9D1-203ENST00000563798 ARHGEF28Q8N1W1 1705 aaKnown RBP25.06■■□□□ 1.6
VPS9D1-203ENST00000563798 PMFBP1Q8TBY8 1022 aa25.05■■□□□ 1.6
VPS9D1-203ENST00000563798 UNC5CLQ8IV45 518 aa25.04■■□□□ 1.6
VPS9D1-203ENST00000563798 GJD4Q96KN9 370 aaPredicted RBP25.03■■□□□ 1.6
VPS9D1-203ENST00000563798 TRPM3Q9HCF6 1732 aaPredicted RBP25.02■■□□□ 1.6
VPS9D1-203ENST00000563798 GPRASP1Q5JY77 1395 aa25.01■■□□□ 1.59
VPS9D1-203ENST00000563798 ATAD2Q6PL18 1390 aa25.01■■□□□ 1.59
VPS9D1-203ENST00000563798 CABLES1Q8TDN4 633 aa25■■□□□ 1.59
VPS9D1-203ENST00000563798 ABCA3Q99758 1704 aa25■■□□□ 1.59
VPS9D1-203ENST00000563798 ATP7BP35670 1465 aa24.98■■□□□ 1.59
VPS9D1-203ENST00000563798 ALS2Q96Q42 1657 aa24.97■■□□□ 1.59
VPS9D1-203ENST00000563798 HAP1P54257 671 aaPredicted RBP24.97■■□□□ 1.59
VPS9D1-203ENST00000563798 RALGAPBQ86X10 1494 aa24.96■■□□□ 1.59
VPS9D1-203ENST00000563798 LMOD2Q6P5Q4 547 aa24.96■■□□□ 1.59
VPS9D1-203ENST00000563798 GLI3P10071 1580 aa24.96■■□□□ 1.59
VPS9D1-203ENST00000563798 NWD2Q9ULI1 1742 aa24.95■■□□□ 1.59
VPS9D1-203ENST00000563798 NBPF1Q3BBV0 1214 aa24.95■■□□□ 1.58
VPS9D1-203ENST00000563798 NUDT16Q96DE0 195 aaKnown RBP24.95■■□□□ 1.58
VPS9D1-203ENST00000563798 VPS72Q15906 364 aa24.94■■□□□ 1.58
VPS9D1-203ENST00000563798 NGDNQ8NEJ9 315 aaKnown RBP24.94■■□□□ 1.58
VPS9D1-203ENST00000563798 ITSN1Q15811 1721 aa24.94■■□□□ 1.58
VPS9D1-203ENST00000563798 CDK19Q9BWU1 502 aa24.93■■□□□ 1.58
VPS9D1-203ENST00000563798 FAM83GA6ND36 823 aa24.92■■□□□ 1.58
VPS9D1-203ENST00000563798 PLCH1Q4KWH8 1693 aa24.91■■□□□ 1.58
VPS9D1-203ENST00000563798 ONECUT3O60422 494 aaPredicted RBP24.91■■□□□ 1.58
VPS9D1-203ENST00000563798 POLR3AO14802 1390 aaPredicted RBP24.91■■□□□ 1.58
VPS9D1-203ENST00000563798 CCDC125Q86Z20 511 aa24.89■■□□□ 1.58
VPS9D1-203ENST00000563798 CCDC61Q9Y6R9 512 aa24.89■■□□□ 1.58
VPS9D1-203ENST00000563798 TOPAZ1Q8N9V7 1692 aa24.88■■□□□ 1.57
VPS9D1-203ENST00000563798 PLEKHG3A1L390 1219 aa24.88■■□□□ 1.57
VPS9D1-203ENST00000563798 L3MBTL2Q969R5 705 aa24.88■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms