RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 KIF1AQ12756 1690 aa20.68■□□□□ 0.9
SMPD3-204ENST00000563396 KIAA1210Q9ULL0 1709 aa20.67■□□□□ 0.9
SMPD3-204ENST00000563396 DHX57Q6P158 1386 aaKnown RBP20.67■□□□□ 0.9
SMPD3-204ENST00000563396 PLEKHH1Q9ULM0 1364 aa20.67■□□□□ 0.9
SMPD3-204ENST00000563396 TMEM132EQ6IEE7 984 aa20.66■□□□□ 0.9
SMPD3-204ENST00000563396 RGS17Q9UGC6 210 aaPredicted RBP20.66■□□□□ 0.9
SMPD3-204ENST00000563396 COL22A1Q8NFW1 1626 aaPredicted RBP20.66■□□□□ 0.9
SMPD3-204ENST00000563396 ARHGEF28Q8N1W1 1705 aaKnown RBP20.65■□□□□ 0.9
SMPD3-204ENST00000563396 SIRT1Q96EB6 747 aa20.65■□□□□ 0.9
SMPD3-204ENST00000563396 CFAP70Q5T0N1 1121 aa20.64■□□□□ 0.89
SMPD3-204ENST00000563396 STAC3Q96MF2 364 aa20.64■□□□□ 0.89
SMPD3-204ENST00000563396 STK26Q9P289 416 aa20.62■□□□□ 0.89
SMPD3-204ENST00000563396 PXDNQ92626 1479 aa20.62■□□□□ 0.89
SMPD3-204ENST00000563396 PNPLA6Q8IY17 1366 aa20.61■□□□□ 0.89
SMPD3-204ENST00000563396 SOS2Q07890 1332 aaPredicted RBP20.61■□□□□ 0.89
SMPD3-204ENST00000563396 WAPLQ7Z5K2 1190 aa20.61■□□□□ 0.89
SMPD3-204ENST00000563396 RGPD8O14715 1765 aaPredicted RBP20.61■□□□□ 0.89
SMPD3-204ENST00000563396 USP32Q8NFA0 1604 aa20.6■□□□□ 0.89
SMPD3-204ENST00000563396 ORAI2Q96SN7 254 aa20.59■□□□□ 0.89
SMPD3-204ENST00000563396 LRRC59Q96AG4 307 aaKnown RBP20.58■□□□□ 0.89
SMPD3-204ENST00000563396 DCAF11Q8TEB1 546 aa20.57■□□□□ 0.88
SMPD3-204ENST00000563396 DDX17Q92841 729 aaKnown RBP20.57■□□□□ 0.88
SMPD3-204ENST00000563396 MARF1Q9Y4F3 1742 aaKnown RBP20.55■□□□□ 0.88
SMPD3-204ENST00000563396 NPHP3Q7Z494 1330 aa20.54■□□□□ 0.88
SMPD3-204ENST00000563396 ANKARQ7Z5J8 1434 aa20.54■□□□□ 0.88
SMPD3-204ENST00000563396 PRAM1Q96QH2 718 aa20.53■□□□□ 0.88
SMPD3-204ENST00000563396 POTEAQ6S8J7 498 aa20.52■□□□□ 0.88
SMPD3-204ENST00000563396 ITSN1Q15811 1721 aa20.52■□□□□ 0.88
SMPD3-204ENST00000563396 TULP4Q9NRJ4 1543 aa20.52■□□□□ 0.87
SMPD3-204ENST00000563396 ESCO1Q5FWF5 840 aa20.5■□□□□ 0.87
SMPD3-204ENST00000563396 KDM2AQ9Y2K7 1162 aa20.5■□□□□ 0.87
SMPD3-204ENST00000563396 ABCA3Q99758 1704 aa20.5■□□□□ 0.87
SMPD3-204ENST00000563396 TRPM1Q7Z4N2 1603 aa20.49■□□□□ 0.87
SMPD3-204ENST00000563396 TOPAZ1Q8N9V7 1692 aa20.48■□□□□ 0.87
SMPD3-204ENST00000563396 EIF3AQ14152 1382 aaKnown RBP20.47■□□□□ 0.87
SMPD3-204ENST00000563396 TRPM3Q9HCF6 1732 aaPredicted RBP20.47■□□□□ 0.87
SMPD3-204ENST00000563396 MEX3CQ5U5Q3 659 aaKnown RBP20.47■□□□□ 0.87
SMPD3-204ENST00000563396 TRAK1Q9UPV9 953 aa20.46■□□□□ 0.87
SMPD3-204ENST00000563396 NUTM2FA1L443 756 aa20.45■□□□□ 0.86
SMPD3-204ENST00000563396 ZNF772Q68DY9 489 aaPredicted RBP20.45■□□□□ 0.86
SMPD3-204ENST00000563396 ATP7BP35670 1465 aa20.44■□□□□ 0.86
SMPD3-204ENST00000563396 CDK12Q9NYV4 1490 aaPredicted RBP20.44■□□□□ 0.86
SMPD3-204ENST00000563396 FOXO3O43524 673 aa20.44■□□□□ 0.86
SMPD3-204ENST00000563396 POGKQ9P215 609 aa20.44■□□□□ 0.86
SMPD3-204ENST00000563396 ALS2Q96Q42 1657 aa20.44■□□□□ 0.86
SMPD3-204ENST00000563396 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.44■□□□□ 0.86
SMPD3-204ENST00000563396 TNS3Q68CZ2 1445 aa20.44■□□□□ 0.86
SMPD3-204ENST00000563396 NUTM2BA6NNL0 878 aaPredicted RBP20.43■□□□□ 0.86
SMPD3-204ENST00000563396 NUTM2EB1AL46 878 aaPredicted RBP20.43■□□□□ 0.86
SMPD3-204ENST00000563396 SAFB2Q14151 953 aaKnown RBP eCLIP20.43■□□□□ 0.86
SMPD3-204ENST00000563396 NUTM2AQ8IVF1 878 aaPredicted RBP20.43■□□□□ 0.86
SMPD3-204ENST00000563396 QRICH2Q9H0J4 1663 aa20.42■□□□□ 0.86
SMPD3-204ENST00000563396 AFF2P51816 1311 aa20.41■□□□□ 0.86
SMPD3-204ENST00000563396 CRYBG1Q9Y4K1 1723 aa20.41■□□□□ 0.86
SMPD3-204ENST00000563396 SBNO1A3KN83 1393 aa20.4■□□□□ 0.86
SMPD3-204ENST00000563396 SPATA31A3Q5VYP0 1347 aa20.4■□□□□ 0.86
SMPD3-204ENST00000563396 PHF8Q9UPP1 1060 aa20.4■□□□□ 0.86
SMPD3-204ENST00000563396 PRR36Q9H6K5 1346 aa20.39■□□□□ 0.85
SMPD3-204ENST00000563396 MINK1Q8N4C8 1332 aaPredicted RBP20.38■□□□□ 0.85
SMPD3-204ENST00000563396 XPCQ01831 940 aaPredicted RBP20.38■□□□□ 0.85
SMPD3-204ENST00000563396 WASLO00401 505 aaPredicted RBP20.37■□□□□ 0.85
SMPD3-204ENST00000563396 C8orf37Q96NL8 207 aa20.37■□□□□ 0.85
SMPD3-204ENST00000563396 HIRIP3Q9BW71 556 aaPredicted RBP20.37■□□□□ 0.85
SMPD3-204ENST00000563396 L3MBTL2Q969R5 705 aa20.36■□□□□ 0.85
SMPD3-204ENST00000563396 PLCH1Q4KWH8 1693 aa20.35■□□□□ 0.85
SMPD3-204ENST00000563396 NWD2Q9ULI1 1742 aa20.35■□□□□ 0.85
SMPD3-204ENST00000563396 NBPF1Q3BBV0 1214 aa20.34■□□□□ 0.85
SMPD3-204ENST00000563396 KRT28Q7Z3Y7 464 aa20.34■□□□□ 0.85
SMPD3-204ENST00000563396 SIN3AQ96ST3 1273 aa20.34■□□□□ 0.85
SMPD3-204ENST00000563396 ARHGEF10O15013 1369 aa20.34■□□□□ 0.85
SMPD3-204ENST00000563396 ADAMTS2O95450 1211 aa20.33■□□□□ 0.85
SMPD3-204ENST00000563396 FNBP4Q8N3X1 1017 aaPredicted RBP20.33■□□□□ 0.85
SMPD3-204ENST00000563396 RGS12O14924 1447 aa20.33■□□□□ 0.84
SMPD3-204ENST00000563396 ATRNO75882 1429 aa20.33■□□□□ 0.84
SMPD3-204ENST00000563396 SLIT2O94813 1529 aa20.32■□□□□ 0.84
SMPD3-204ENST00000563396 BCL9LQ86UU0 1499 aa20.31■□□□□ 0.84
SMPD3-204ENST00000563396 TRIM26Q12899 539 aaPredicted RBP20.31■□□□□ 0.84
SMPD3-204ENST00000563396 PSME1Q06323 249 aa20.3■□□□□ 0.84
SMPD3-204ENST00000563396 GPRASP1Q5JY77 1395 aa20.3■□□□□ 0.84
SMPD3-204ENST00000563396 PHRF1Q9P1Y6 1649 aaKnown RBP20.3■□□□□ 0.84
SMPD3-204ENST00000563396 RXRBP28702 533 aa20.29■□□□□ 0.84
SMPD3-204ENST00000563396 NGLY1Q96IV0 654 aa20.29■□□□□ 0.84
SMPD3-204ENST00000563396 NRAPQ86VF7 1730 aa20.29■□□□□ 0.84
SMPD3-204ENST00000563396 PMFBP1Q8TBY8 1022 aa20.28■□□□□ 0.84
SMPD3-204ENST00000563396 POLR3AO14802 1390 aaPredicted RBP20.28■□□□□ 0.84
SMPD3-204ENST00000563396 CENPJQ9HC77 1338 aaPredicted RBP20.27■□□□□ 0.84
SMPD3-204ENST00000563396 RALGAPBQ86X10 1494 aa20.27■□□□□ 0.84
SMPD3-204ENST00000563396 RBM6P78332 1123 aaKnown RBP20.26■□□□□ 0.83
SMPD3-204ENST00000563396 USP21Q9UK80 565 aa20.26■□□□□ 0.83
SMPD3-204ENST00000563396 GLI3P10071 1580 aa20.25■□□□□ 0.83
SMPD3-204ENST00000563396 NUDT16Q96DE0 195 aaKnown RBP20.25■□□□□ 0.83
SMPD3-204ENST00000563396 COL14A1Q05707 1796 aaKnown RBP20.25■□□□□ 0.83
SMPD3-204ENST00000563396 ROCK2O75116 1388 aaKnown RBP20.24■□□□□ 0.83
SMPD3-204ENST00000563396 QTRT2Q9H974 415 aaKnown RBP20.24■□□□□ 0.83
SMPD3-204ENST00000563396 TRPC5Q9UL62 973 aaPredicted RBP20.24■□□□□ 0.83
SMPD3-204ENST00000563396 NEUROD1Q13562 356 aa20.23■□□□□ 0.83
SMPD3-204ENST00000563396 CDK19Q9BWU1 502 aa20.23■□□□□ 0.83
SMPD3-204ENST00000563396 NRKQ7Z2Y5 1582 aa20.21■□□□□ 0.83
SMPD3-204ENST00000563396 CCDC61Q9Y6R9 512 aa20.21■□□□□ 0.83
SMPD3-204ENST00000563396 SBNO2Q9Y2G9 1366 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms