RNA–Protein interactions for RNA: ENST00000562874.2

SF3B3-203, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 401 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-203ENST00000562874 YTHDC2Q9H6S0 1430 aaKnown RBP23.26■■□□□ 1.31
SF3B3-203ENST00000562874 MEX3CQ5U5Q3 659 aaKnown RBP23.25■■□□□ 1.31
SF3B3-203ENST00000562874 MARF1Q9Y4F3 1742 aaKnown RBP23.25■■□□□ 1.31
SF3B3-203ENST00000562874 KIF1AQ12756 1690 aa23.23■■□□□ 1.31
SF3B3-203ENST00000562874 NUTM2BA6NNL0 878 aaPredicted RBP23.23■■□□□ 1.31
SF3B3-203ENST00000562874 NUTM2EB1AL46 878 aaPredicted RBP23.23■■□□□ 1.31
SF3B3-203ENST00000562874 NUTM2AQ8IVF1 878 aaPredicted RBP23.23■■□□□ 1.31
SF3B3-203ENST00000562874 ORAI2Q96SN7 254 aa23.23■■□□□ 1.31
SF3B3-203ENST00000562874 PNPLA6Q8IY17 1366 aa23.23■■□□□ 1.31
SF3B3-203ENST00000562874 WAPLQ7Z5K2 1190 aa23.22■■□□□ 1.31
SF3B3-203ENST00000562874 COL22A1Q8NFW1 1626 aaPredicted RBP23.22■■□□□ 1.31
SF3B3-203ENST00000562874 ARHGEF28Q8N1W1 1705 aaKnown RBP23.19■■□□□ 1.3
SF3B3-203ENST00000562874 ABCC11Q96J66 1382 aa23.19■■□□□ 1.3
SF3B3-203ENST00000562874 ADGRB1O14514 1584 aa23.18■■□□□ 1.3
SF3B3-203ENST00000562874 CFAP70Q5T0N1 1121 aa23.18■■□□□ 1.3
SF3B3-203ENST00000562874 NUTM2FA1L443 756 aa23.17■■□□□ 1.3
SF3B3-203ENST00000562874 USP32Q8NFA0 1604 aa23.17■■□□□ 1.3
SF3B3-203ENST00000562874 LRRC59Q96AG4 307 aaKnown RBP23.16■■□□□ 1.3
SF3B3-203ENST00000562874 PXDNQ92626 1479 aa23.16■■□□□ 1.3
SF3B3-203ENST00000562874 C14orf93Q9H972 538 aaKnown RBP23.15■■□□□ 1.3
SF3B3-203ENST00000562874 DLC1Q96QB1 1528 aa23.14■■□□□ 1.3
SF3B3-203ENST00000562874 ADGRB2O60241 1585 aa23.14■■□□□ 1.29
SF3B3-203ENST00000562874 ABCA3Q99758 1704 aa23.13■■□□□ 1.29
SF3B3-203ENST00000562874 SOS2Q07890 1332 aaPredicted RBP23.12■■□□□ 1.29
SF3B3-203ENST00000562874 ESCO1Q5FWF5 840 aa23.12■■□□□ 1.29
SF3B3-203ENST00000562874 DHX57Q6P158 1386 aaKnown RBP23.12■■□□□ 1.29
SF3B3-203ENST00000562874 AFF2P51816 1311 aa23.1■■□□□ 1.29
SF3B3-203ENST00000562874 XPCQ01831 940 aaPredicted RBP23.1■■□□□ 1.29
SF3B3-203ENST00000562874 SAFB2Q14151 953 aaKnown RBP eCLIP23.1■■□□□ 1.29
SF3B3-203ENST00000562874 KDM2AQ9Y2K7 1162 aa23.1■■□□□ 1.29
SF3B3-203ENST00000562874 KIAA1210Q9ULL0 1709 aa23.09■■□□□ 1.29
SF3B3-203ENST00000562874 ZNF772Q68DY9 489 aaPredicted RBP23.08■■□□□ 1.29
SF3B3-203ENST00000562874 C8orf37Q96NL8 207 aa23.08■■□□□ 1.29
SF3B3-203ENST00000562874 DCAF11Q8TEB1 546 aa23.07■■□□□ 1.28
SF3B3-203ENST00000562874 ITSN1Q15811 1721 aa23.07■■□□□ 1.28
SF3B3-203ENST00000562874 NPHP3Q7Z494 1330 aa23.07■■□□□ 1.28
SF3B3-203ENST00000562874 ADAMTS2O95450 1211 aa23.06■■□□□ 1.28
SF3B3-203ENST00000562874 HRCP23327 699 aa23.06■■□□□ 1.28
SF3B3-203ENST00000562874 PRAM1Q96QH2 718 aa23.06■■□□□ 1.28
SF3B3-203ENST00000562874 FOXO3O43524 673 aa23.05■■□□□ 1.28
SF3B3-203ENST00000562874 TRPM3Q9HCF6 1732 aaPredicted RBP23.04■■□□□ 1.28
SF3B3-203ENST00000562874 TRAK1Q9UPV9 953 aa23.02■■□□□ 1.28
SF3B3-203ENST00000562874 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.02■■□□□ 1.28
SF3B3-203ENST00000562874 PLCH1Q4KWH8 1693 aa23.01■■□□□ 1.27
SF3B3-203ENST00000562874 SIRT1Q96EB6 747 aa23.01■■□□□ 1.27
SF3B3-203ENST00000562874 POGKQ9P215 609 aa23■■□□□ 1.27
SF3B3-203ENST00000562874 RGS12O14924 1447 aa22.99■■□□□ 1.27
SF3B3-203ENST00000562874 TULP4Q9NRJ4 1543 aa22.98■■□□□ 1.27
SF3B3-203ENST00000562874 ALS2Q96Q42 1657 aa22.98■■□□□ 1.27
SF3B3-203ENST00000562874 CDK12Q9NYV4 1490 aaPredicted RBP22.98■■□□□ 1.27
SF3B3-203ENST00000562874 TOPAZ1Q8N9V7 1692 aa22.97■■□□□ 1.27
SF3B3-203ENST00000562874 HIRIP3Q9BW71 556 aaPredicted RBP22.97■■□□□ 1.27
SF3B3-203ENST00000562874 MINK1Q8N4C8 1332 aaPredicted RBP22.97■■□□□ 1.27
SF3B3-203ENST00000562874 RXRBP28702 533 aa22.96■■□□□ 1.27
SF3B3-203ENST00000562874 NGLY1Q96IV0 654 aa22.96■■□□□ 1.27
SF3B3-203ENST00000562874 ANKARQ7Z5J8 1434 aa22.96■■□□□ 1.27
SF3B3-203ENST00000562874 CRYBG1Q9Y4K1 1723 aa22.96■■□□□ 1.27
SF3B3-203ENST00000562874 TNS3Q68CZ2 1445 aa22.95■■□□□ 1.26
SF3B3-203ENST00000562874 QRICH2Q9H0J4 1663 aa22.95■■□□□ 1.26
SF3B3-203ENST00000562874 PHF8Q9UPP1 1060 aa22.94■■□□□ 1.26
SF3B3-203ENST00000562874 SPATA31A3Q5VYP0 1347 aa22.92■■□□□ 1.26
SF3B3-203ENST00000562874 TRPM1Q7Z4N2 1603 aa22.92■■□□□ 1.26
SF3B3-203ENST00000562874 NWD2Q9ULI1 1742 aa22.91■■□□□ 1.26
SF3B3-203ENST00000562874 KRT28Q7Z3Y7 464 aa22.91■■□□□ 1.26
SF3B3-203ENST00000562874 QTRT2Q9H974 415 aaKnown RBP22.91■■□□□ 1.26
SF3B3-203ENST00000562874 PRR36Q9H6K5 1346 aa22.9■■□□□ 1.26
SF3B3-203ENST00000562874 BRWD3Q6RI45 1802 aa22.9■■□□□ 1.26
SF3B3-203ENST00000562874 PLEKHG5O94827 1062 aa22.9■■□□□ 1.26
SF3B3-203ENST00000562874 PMFBP1Q8TBY8 1022 aa22.9■■□□□ 1.26
SF3B3-203ENST00000562874 USP21Q9UK80 565 aa22.9■■□□□ 1.26
SF3B3-203ENST00000562874 ATP7BP35670 1465 aa22.89■■□□□ 1.25
SF3B3-203ENST00000562874 ATRNO75882 1429 aa22.89■■□□□ 1.25
SF3B3-203ENST00000562874 NRAPQ86VF7 1730 aa22.88■■□□□ 1.25
SF3B3-203ENST00000562874 RBM6P78332 1123 aaKnown RBP22.87■■□□□ 1.25
SF3B3-203ENST00000562874 STAC3Q96MF2 364 aa22.87■■□□□ 1.25
SF3B3-203ENST00000562874 EIF3AQ14152 1382 aaKnown RBP22.87■■□□□ 1.25
SF3B3-203ENST00000562874 PHRF1Q9P1Y6 1649 aaKnown RBP22.86■■□□□ 1.25
SF3B3-203ENST00000562874 BCL9LQ86UU0 1499 aa22.86■■□□□ 1.25
SF3B3-203ENST00000562874 GLI3P10071 1580 aa22.86■■□□□ 1.25
SF3B3-203ENST00000562874 FNBP4Q8N3X1 1017 aaPredicted RBP22.84■■□□□ 1.25
SF3B3-203ENST00000562874 SBNO1A3KN83 1393 aa22.84■■□□□ 1.25
SF3B3-203ENST00000562874 WASLO00401 505 aaPredicted RBP22.83■■□□□ 1.25
SF3B3-203ENST00000562874 LMOD2Q6P5Q4 547 aa22.83■■□□□ 1.25
SF3B3-203ENST00000562874 CABLES1Q8TDN4 633 aa22.83■■□□□ 1.25
SF3B3-203ENST00000562874 SLIT2O94813 1529 aa22.82■■□□□ 1.24
SF3B3-203ENST00000562874 PSME1Q06323 249 aa22.82■■□□□ 1.24
SF3B3-203ENST00000562874 UPF1Q92900 1129 aaKnown RBP eCLIP22.82■■□□□ 1.24
SF3B3-203ENST00000562874 TRPC5Q9UL62 973 aaPredicted RBP22.82■■□□□ 1.24
SF3B3-203ENST00000562874 HAP1P54257 671 aaPredicted RBP22.81■■□□□ 1.24
SF3B3-203ENST00000562874 NBPF1Q3BBV0 1214 aa22.81■■□□□ 1.24
SF3B3-203ENST00000562874 ARHGEF10O15013 1369 aa22.8■■□□□ 1.24
SF3B3-203ENST00000562874 COL14A1Q05707 1796 aaKnown RBP22.8■■□□□ 1.24
SF3B3-203ENST00000562874 SIN3AQ96ST3 1273 aa22.79■■□□□ 1.24
SF3B3-203ENST00000562874 GPRASP1Q5JY77 1395 aa22.77■■□□□ 1.24
SF3B3-203ENST00000562874 RALGAPBQ86X10 1494 aa22.76■■□□□ 1.23
SF3B3-203ENST00000562874 L3MBTL2Q969R5 705 aa22.75■■□□□ 1.23
SF3B3-203ENST00000562874 NGDNQ8NEJ9 315 aaKnown RBP22.74■■□□□ 1.23
SF3B3-203ENST00000562874 NEUROD1Q13562 356 aa22.73■■□□□ 1.23
SF3B3-203ENST00000562874 NUDT16Q96DE0 195 aaKnown RBP22.73■■□□□ 1.23
SF3B3-203ENST00000562874 CDK19Q9BWU1 502 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms