RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 HSPA2P54652 639 aa18.83■□□□□ 0.6
VPS39-206ENST00000562662 CDCA8Q53HL2 280 aa18.83■□□□□ 0.6
VPS39-206ENST00000562662 WAPLQ7Z5K2 1190 aa18.83■□□□□ 0.6
VPS39-206ENST00000562662 NWD1Q149M9 1564 aa18.83■□□□□ 0.6
VPS39-206ENST00000562662 SAFB2Q14151 953 aaKnown RBP eCLIP18.82■□□□□ 0.6
VPS39-206ENST00000562662 AMOTL2Q9Y2J4 779 aa18.82■□□□□ 0.6
VPS39-206ENST00000562662 ADGRB2O60241 1585 aa18.81■□□□□ 0.6
VPS39-206ENST00000562662 EVC2Q86UK5 1308 aa18.79■□□□□ 0.6
VPS39-206ENST00000562662 MINK1Q8N4C8 1332 aaPredicted RBP18.79■□□□□ 0.6
VPS39-206ENST00000562662 PUS7Q96PZ0 661 aaKnown RBP18.78■□□□□ 0.6
VPS39-206ENST00000562662 STRCP1A6NGW2 1772 aa18.76■□□□□ 0.59
VPS39-206ENST00000562662 KCNA6P17658 529 aa18.75■□□□□ 0.59
VPS39-206ENST00000562662 NALCNQ8IZF0 1738 aa18.74■□□□□ 0.59
VPS39-206ENST00000562662 MIER1Q8N108 512 aa18.74■□□□□ 0.59
VPS39-206ENST00000562662 CDK19Q9BWU1 502 aa18.72■□□□□ 0.59
VPS39-206ENST00000562662 CABP2Q9NPB3 220 aa18.72■□□□□ 0.59
VPS39-206ENST00000562662 NKTRP30414 1462 aaKnown RBP18.71■□□□□ 0.59
VPS39-206ENST00000562662 ATAD2Q6PL18 1390 aa18.7■□□□□ 0.58
VPS39-206ENST00000562662 TOPAZ1Q8N9V7 1692 aa18.7■□□□□ 0.58
VPS39-206ENST00000562662 WASLO00401 505 aaPredicted RBP18.7■□□□□ 0.58
VPS39-206ENST00000562662 PANK3Q9H999 370 aa18.7■□□□□ 0.58
VPS39-206ENST00000562662 FMN2Q9NZ56 1722 aa18.69■□□□□ 0.58
VPS39-206ENST00000562662 SRPK2P78362 688 aaKnown RBP18.69■□□□□ 0.58
VPS39-206ENST00000562662 USP32Q8NFA0 1604 aa18.68■□□□□ 0.58
VPS39-206ENST00000562662 PER1O15534 1290 aaPredicted RBP18.68■□□□□ 0.58
VPS39-206ENST00000562662 NINLQ9Y2I6 1382 aa18.68■□□□□ 0.58
VPS39-206ENST00000562662 ATP7BP35670 1465 aa18.67■□□□□ 0.58
VPS39-206ENST00000562662 ANP32CO43423 234 aa18.67■□□□□ 0.58
VPS39-206ENST00000562662 RGPD8O14715 1765 aaPredicted RBP18.67■□□□□ 0.58
VPS39-206ENST00000562662 CDC42BPGQ6DT37 1551 aa18.67■□□□□ 0.58
VPS39-206ENST00000562662 ITSN1Q15811 1721 aa18.66■□□□□ 0.58
VPS39-206ENST00000562662 SLC12A5Q9H2X9 1139 aa18.65■□□□□ 0.58
VPS39-206ENST00000562662 AKAP12Q02952 1782 aa18.65■□□□□ 0.58
VPS39-206ENST00000562662 XIRP1Q702N8 1843 aaKnown RBP18.65■□□□□ 0.58
VPS39-206ENST00000562662 ADGRL3Q9HAR2 1447 aa18.65■□□□□ 0.58
VPS39-206ENST00000562662 CD163L1Q9NR16 1453 aa18.65■□□□□ 0.58
VPS39-206ENST00000562662 TMC1Q8TDI8 760 aa18.64■□□□□ 0.57
VPS39-206ENST00000562662 ANKRD36BQ8N2N9 1353 aa18.63■□□□□ 0.57
VPS39-206ENST00000562662 PRKRIP1Q9H875 184 aaPredicted RBP18.62■□□□□ 0.57
VPS39-206ENST00000562662 PRR36Q9H6K5 1346 aa18.62■□□□□ 0.57
VPS39-206ENST00000562662 MON2Q7Z3U7 1717 aa18.61■□□□□ 0.57
VPS39-206ENST00000562662 NUDT16Q96DE0 195 aaKnown RBP18.61■□□□□ 0.57
VPS39-206ENST00000562662 PPIP5K1Q6PFW1 1433 aa18.6■□□□□ 0.57
VPS39-206ENST00000562662 A0A1W2PP64 1363 aa18.6■□□□□ 0.57
VPS39-206ENST00000562662 CARD14Q9BXL6 1004 aa18.6■□□□□ 0.57
VPS39-206ENST00000562662 NSD3Q9BZ95 1437 aa18.59■□□□□ 0.57
VPS39-206ENST00000562662 ANKARQ7Z5J8 1434 aa18.58■□□□□ 0.57
VPS39-206ENST00000562662 NPC1L1Q9UHC9 1359 aa18.58■□□□□ 0.57
VPS39-206ENST00000562662 PROSER2Q86WR7 435 aaPredicted RBP18.58■□□□□ 0.56
VPS39-206ENST00000562662 RBM33Q96EV2 1170 aaKnown RBP18.58■□□□□ 0.56
VPS39-206ENST00000562662 CABP1Q9NZU7 370 aa18.58■□□□□ 0.56
VPS39-206ENST00000562662 KNSTRNQ9Y448 316 aa18.58■□□□□ 0.56
VPS39-206ENST00000562662 NCOA3Q9Y6Q9 1424 aa18.57■□□□□ 0.56
VPS39-206ENST00000562662 AMER1Q5JTC6 1135 aaPredicted RBP18.57■□□□□ 0.56
VPS39-206ENST00000562662 CCDC61Q9Y6R9 512 aa18.57■□□□□ 0.56
VPS39-206ENST00000562662 KIF20BQ96Q89 1820 aa18.57■□□□□ 0.56
VPS39-206ENST00000562662 KTN1Q86UP2 1357 aaKnown RBP18.56■□□□□ 0.56
VPS39-206ENST00000562662 PARD3Q8TEW0 1356 aa18.56■□□□□ 0.56
VPS39-206ENST00000562662 DMRT2Q9Y5R5 561 aa18.56■□□□□ 0.56
VPS39-206ENST00000562662 ANKRD26Q9UPS8 1709 aa18.56■□□□□ 0.56
VPS39-206ENST00000562662 CPSF1Q10570 1443 aaKnown RBP18.56■□□□□ 0.56
VPS39-206ENST00000562662 TMEM94Q12767 1356 aa18.55■□□□□ 0.56
VPS39-206ENST00000562662 CCER2I3L3R5 266 aa18.55■□□□□ 0.56
VPS39-206ENST00000562662 TERF2IPQ9NYB0 399 aa18.55■□□□□ 0.56
VPS39-206ENST00000562662 NRKQ7Z2Y5 1582 aa18.55■□□□□ 0.56
VPS39-206ENST00000562662 LRRC7Q96NW7 1537 aa18.54■□□□□ 0.56
VPS39-206ENST00000562662 ZNF335Q9H4Z2 1342 aaPredicted RBP18.54■□□□□ 0.56
VPS39-206ENST00000562662 NUTM2FA1L443 756 aa18.53■□□□□ 0.56
VPS39-206ENST00000562662 RALBP1Q15311 655 aa18.53■□□□□ 0.56
VPS39-206ENST00000562662 HDGFL2Q7Z4V5 671 aaPredicted RBP18.53■□□□□ 0.56
VPS39-206ENST00000562662 PLEKHG3A1L390 1219 aa18.52■□□□□ 0.56
VPS39-206ENST00000562662 CNGB1Q14028 1251 aaPredicted RBP18.52■□□□□ 0.56
VPS39-206ENST00000562662 CC2D1BQ5T0F9 858 aaKnown RBP18.52■□□□□ 0.56
VPS39-206ENST00000562662 DCCP43146 1447 aa18.51■□□□□ 0.55
VPS39-206ENST00000562662 C14orf37Q86TY3 774 aa18.5■□□□□ 0.55
VPS39-206ENST00000562662 EDC4Q6P2E9 1401 aaKnown RBP18.49■□□□□ 0.55
VPS39-206ENST00000562662 C19orf44Q9H6X5 657 aa18.49■□□□□ 0.55
VPS39-206ENST00000562662 POLR3AO14802 1390 aaPredicted RBP18.49■□□□□ 0.55
VPS39-206ENST00000562662 NSD2O96028 1365 aa18.48■□□□□ 0.55
VPS39-206ENST00000562662 ACEP12821 1306 aa18.48■□□□□ 0.55
VPS39-206ENST00000562662 CGNL1Q0VF96 1302 aa18.48■□□□□ 0.55
VPS39-206ENST00000562662 MYBBP1AQ9BQG0 1328 aaKnown RBP18.48■□□□□ 0.55
VPS39-206ENST00000562662 KIF1AQ12756 1690 aa18.47■□□□□ 0.55
VPS39-206ENST00000562662 ZNF692Q9BU19 519 aaPredicted RBP18.46■□□□□ 0.55
VPS39-206ENST00000562662 USP6P35125 1406 aa18.46■□□□□ 0.55
VPS39-206ENST00000562662 MST1RQ04912 1400 aa18.46■□□□□ 0.55
VPS39-206ENST00000562662 LTBP4Q8N2S1 1624 aa18.45■□□□□ 0.54
VPS39-206ENST00000562662 CCDC184Q52MB2 194 aa18.45■□□□□ 0.54
VPS39-206ENST00000562662 C1orf167Q5SNV9 1468 aa18.45■□□□□ 0.54
VPS39-206ENST00000562662 MSH6P52701 1360 aa18.44■□□□□ 0.54
VPS39-206ENST00000562662 SSH2Q76I76 1423 aa18.44■□□□□ 0.54
VPS39-206ENST00000562662 PMFBP1Q8TBY8 1022 aa18.44■□□□□ 0.54
VPS39-206ENST00000562662 FYB1O15117 783 aa18.42■□□□□ 0.54
VPS39-206ENST00000562662 PHF8Q9UPP1 1060 aa18.42■□□□□ 0.54
VPS39-206ENST00000562662 BRD4O60885 1362 aaPredicted RBP18.42■□□□□ 0.54
VPS39-206ENST00000562662 USP54Q70EL1 1684 aa18.41■□□□□ 0.54
VPS39-206ENST00000562662 ATF3P18847 181 aa18.41■□□□□ 0.54
VPS39-206ENST00000562662 PPP2R1AP30153 589 aa18.4■□□□□ 0.54
VPS39-206ENST00000562662 AEBP2Q6ZN18 517 aaPredicted RBP18.4■□□□□ 0.54
VPS39-206ENST00000562662 CADPS2Q86UW7 1296 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms