RNA–Protein interactions for RNA: ENST00000561940.1

SMG1-204, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 964 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-204ENST00000561940 S1PR4O95977 384 aa13.28□□□□□ -0.28
SMG1-204ENST00000561940 Q3C1V9 767 aa13.28□□□□□ -0.28
SMG1-204ENST00000561940 C6orf229H3BNL8 230 aa13.27□□□□□ -0.29
SMG1-204ENST00000561940 PPEF1O14829 653 aaPredicted RBP13.27□□□□□ -0.29
SMG1-204ENST00000561940 RSBN1LQ6PCB5 846 aaPredicted RBP13.27□□□□□ -0.29
SMG1-204ENST00000561940 FAM160A2Q8N612 972 aaPredicted RBP13.27□□□□□ -0.29
SMG1-204ENST00000561940 ATP1B4Q9UN42 357 aaPredicted RBP13.27□□□□□ -0.29
SMG1-204ENST00000561940 TMEM132AQ24JP5 1023 aa13.26□□□□□ -0.29
SMG1-204ENST00000561940 SLC6A16Q9GZN6 736 aa13.26□□□□□ -0.29
SMG1-204ENST00000561940 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.26□□□□□ -0.29
SMG1-204ENST00000561940 LIMD1Q9UGP4 676 aa13.26□□□□□ -0.29
SMG1-204ENST00000561940 PRDM9Q9NQV7 894 aa13.25□□□□□ -0.29
SMG1-204ENST00000561940 SALL2Q9Y467 1007 aaPredicted RBP13.25□□□□□ -0.29
SMG1-204ENST00000561940 SPTLC1O15269 473 aa13.24□□□□□ -0.29
SMG1-204ENST00000561940 RSPH6AQ9H0K4 717 aa13.24□□□□□ -0.29
SMG1-204ENST00000561940 USB1Q9BQ65 265 aaKnown RBP13.23□□□□□ -0.29
SMG1-204ENST00000561940 GGCXP38435 758 aa13.22□□□□□ -0.29
SMG1-204ENST00000561940 RNF223E7ERA6 249 aa13.21□□□□□ -0.29
SMG1-204ENST00000561940 CABLES1Q8TDN4 633 aa13.21□□□□□ -0.29
SMG1-204ENST00000561940 CLK2P49760 499 aaKnown RBP13.2□□□□□ -0.3
SMG1-204ENST00000561940 PROCA1Q8NCQ7 364 aaPredicted RBP13.2□□□□□ -0.3
SMG1-204ENST00000561940 MTMR2Q13614 643 aa13.18□□□□□ -0.3
SMG1-204ENST00000561940 QPCTQ16769 361 aa13.18□□□□□ -0.3
SMG1-204ENST00000561940 HRCP23327 699 aa13.17□□□□□ -0.3
SMG1-204ENST00000561940 GJA5P36382 358 aa13.17□□□□□ -0.3
SMG1-204ENST00000561940 SKIV2LQ15477 1246 aaKnown RBP13.17□□□□□ -0.3
SMG1-204ENST00000561940 SH3D19Q5HYK7 790 aa13.17□□□□□ -0.3
SMG1-204ENST00000561940 RETREG3Q86VR2 466 aa13.17□□□□□ -0.3
SMG1-204ENST00000561940 GTF3C3Q9Y5Q9 886 aa13.17□□□□□ -0.3
SMG1-204ENST00000561940 NUTM2BA6NNL0 878 aaPredicted RBP13.16□□□□□ -0.3
SMG1-204ENST00000561940 NUTM2EB1AL46 878 aaPredicted RBP13.16□□□□□ -0.3
SMG1-204ENST00000561940 MSS51Q4VC12 460 aa13.16□□□□□ -0.3
SMG1-204ENST00000561940 NUTM2DQ5VT03 806 aaPredicted RBP13.16□□□□□ -0.3
SMG1-204ENST00000561940 NUTM2AQ8IVF1 878 aaPredicted RBP13.16□□□□□ -0.3
SMG1-204ENST00000561940 PRR7Q8TB68 274 aa13.15□□□□□ -0.3
SMG1-204ENST00000561940 ZBTB3Q9H5J0 574 aa13.15□□□□□ -0.3
SMG1-204ENST00000561940 RTL5Q5HYW3 569 aaPredicted RBP13.13□□□□□ -0.31
SMG1-204ENST00000561940 TSC1Q92574 1164 aa13.13□□□□□ -0.31
SMG1-204ENST00000561940 FCF1Q9Y324 198 aaKnown RBP13.13□□□□□ -0.31
SMG1-204ENST00000561940 CFAP99D6REC4 459 aa13.11□□□□□ -0.31
SMG1-204ENST00000561940 LILRB3O75022 631 aa13.11□□□□□ -0.31
SMG1-204ENST00000561940 FBXO31Q5XUX0 539 aaPredicted RBP13.11□□□□□ -0.31
SMG1-204ENST00000561940 ANKLE1Q8NAG6 615 aa13.11□□□□□ -0.31
SMG1-204ENST00000561940 PLA2G2CQ5R387 149 aa13.1□□□□□ -0.31
SMG1-204ENST00000561940 PRPF38BQ5VTL8 546 aaKnown RBP13.1□□□□□ -0.31
SMG1-204ENST00000561940 CCDC24Q8N4L8 307 aa13.1□□□□□ -0.31
SMG1-204ENST00000561940 PRKD2Q9BZL6 878 aa13.1□□□□□ -0.31
SMG1-204ENST00000561940 SPDYE5A6NIY4 337 aa13.09□□□□□ -0.31
SMG1-204ENST00000561940 DXOO77932 396 aaKnown RBP13.09□□□□□ -0.31
SMG1-204ENST00000561940 JUNDP17535 347 aa13.09□□□□□ -0.31
SMG1-204ENST00000561940 MMP16P51512 607 aa13.09□□□□□ -0.31
SMG1-204ENST00000561940 TIMELESSQ9UNS1 1208 aa13.09□□□□□ -0.31
SMG1-204ENST00000561940 TUSC1Q2TAM9 212 aa13.08□□□□□ -0.32
SMG1-204ENST00000561940 PCMTD1Q96MG8 357 aaPredicted RBP13.08□□□□□ -0.32
SMG1-204ENST00000561940 EMID1Q96A84 441 aaPredicted RBP13.06□□□□□ -0.32
SMG1-204ENST00000561940 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.06□□□□□ -0.32
SMG1-204ENST00000561940 LIAT1Q6ZQX7 453 aa13.05□□□□□ -0.32
SMG1-204ENST00000561940 SLC19A1P41440 591 aa13.04□□□□□ -0.32
SMG1-204ENST00000561940 NUDT12Q9BQG2 462 aa13.03□□□□□ -0.32
SMG1-204ENST00000561940 GOPCQ9HD26 462 aa13.03□□□□□ -0.32
SMG1-204ENST00000561940 PER1O15534 1290 aaPredicted RBP13.01□□□□□ -0.33
SMG1-204ENST00000561940 RGS20O76081 388 aa13.01□□□□□ -0.33
SMG1-204ENST00000561940 ZBTB24O43167 697 aaPredicted RBP12.99□□□□□ -0.33
SMG1-204ENST00000561940 PTCRAQ6ISU1 281 aaPredicted RBP12.99□□□□□ -0.33
SMG1-204ENST00000561940 CTDSPL2Q05D32 466 aa12.98□□□□□ -0.33
SMG1-204ENST00000561940 DESI1Q6ICB0 168 aa12.98□□□□□ -0.33
SMG1-204ENST00000561940 LYPD8Q6UX82 237 aa12.98□□□□□ -0.33
SMG1-204ENST00000561940 V9GY48 417 aaPredicted RBP12.98□□□□□ -0.33
SMG1-204ENST00000561940 AP1G2O75843 785 aa12.97□□□□□ -0.33
SMG1-204ENST00000561940 CCNYL3P0C7X3 344 aa12.97□□□□□ -0.33
SMG1-204ENST00000561940 PTPRNQ16849 979 aa12.97□□□□□ -0.33
SMG1-204ENST00000561940 HELBQ8NG08 1087 aaPredicted RBP12.97□□□□□ -0.33
SMG1-204ENST00000561940 CTHP32929 405 aa12.96□□□□□ -0.33
SMG1-204ENST00000561940 RFC5P40937 340 aa12.96□□□□□ -0.33
SMG1-204ENST00000561940 SPRYD7Q5W111 196 aa12.96□□□□□ -0.33
SMG1-204ENST00000561940 PPP2R2DQ66LE6 453 aa12.96□□□□□ -0.33
SMG1-204ENST00000561940 EVA1BQ9NVM1 165 aa12.95□□□□□ -0.34
SMG1-204ENST00000561940 KCNH2Q12809 1159 aa12.93□□□□□ -0.34
SMG1-204ENST00000561940 LRRN4Q8WUT4 740 aa12.93□□□□□ -0.34
SMG1-204ENST00000561940 MAP10Q9P2G4 905 aa12.93□□□□□ -0.34
SMG1-204ENST00000561940 CD2BP2O95400 341 aaKnown RBP12.92□□□□□ -0.34
SMG1-204ENST00000561940 RPIAP49247 311 aa12.92□□□□□ -0.34
SMG1-204ENST00000561940 ZNF697Q5TEC3 545 aa12.92□□□□□ -0.34
SMG1-204ENST00000561940 ZNF598Q86UK7 904 aaKnown RBP12.91□□□□□ -0.34
SMG1-204ENST00000561940 TRIM32Q13049 653 aa12.9□□□□□ -0.34
SMG1-204ENST00000561940 UNC93B1Q9H1C4 597 aa12.9□□□□□ -0.34
SMG1-204ENST00000561940 FOXC1Q12948 553 aa12.89□□□□□ -0.35
SMG1-204ENST00000561940 F12P00748 615 aaPredicted RBP12.87□□□□□ -0.35
SMG1-204ENST00000561940 LINC01559Q495D7 138 aa12.87□□□□□ -0.35
SMG1-204ENST00000561940 USP17L8P0C7I0 530 aa12.86□□□□□ -0.35
SMG1-204ENST00000561940 BAP1Q92560 729 aa12.86□□□□□ -0.35
SMG1-204ENST00000561940 TNFRSF10AO00220 468 aa12.85□□□□□ -0.35
SMG1-204ENST00000561940 SKOR1P84550 965 aa12.84□□□□□ -0.35
SMG1-204ENST00000561940 TMEM259Q4ZIN3 620 aa12.84□□□□□ -0.35
SMG1-204ENST00000561940 NR6A1Q15406 480 aa12.83□□□□□ -0.36
SMG1-204ENST00000561940 IRX2Q9BZI1 471 aaPredicted RBP12.83□□□□□ -0.36
SMG1-204ENST00000561940 HMX1Q9NP08 348 aaPredicted RBP12.83□□□□□ -0.36
SMG1-204ENST00000561940 PDZRN3Q9UPQ7 1066 aa12.83□□□□□ -0.36
SMG1-204ENST00000561940 GFRA3O60609 400 aa12.82□□□□□ -0.36
SMG1-204ENST00000561940 TRIM67Q6ZTA4 783 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms