RNA–Protein interactions for RNA: ENST00000561749.1

SMPD3-202, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-202ENST00000561749 FAM135BQ49AJ0 1406 aa33.59■■■□□ 2.97
SMPD3-202ENST00000561749 SAFB2Q14151 953 aaKnown RBP eCLIP33.58■■■□□ 2.97
SMPD3-202ENST00000561749 PRAM1Q96QH2 718 aa33.57■■■□□ 2.96
SMPD3-202ENST00000561749 NBPF8Q3BBV2 869 aa33.56■■■□□ 2.96
SMPD3-202ENST00000561749 CLSPNQ9HAW4 1339 aa33.55■■■□□ 2.96
SMPD3-202ENST00000561749 SIRT1Q96EB6 747 aa33.55■■■□□ 2.96
SMPD3-202ENST00000561749 POGKQ9P215 609 aa33.54■■■□□ 2.96
SMPD3-202ENST00000561749 MST1RQ04912 1400 aa33.53■■■□□ 2.96
SMPD3-202ENST00000561749 CDC42BPGQ6DT37 1551 aa33.52■■■□□ 2.96
SMPD3-202ENST00000561749 HSPA1LP34931 641 aa33.51■■■□□ 2.95
SMPD3-202ENST00000561749 ROCK2O75116 1388 aaKnown RBP33.47■■■□□ 2.95
SMPD3-202ENST00000561749 FMN2Q9NZ56 1722 aa33.46■■■□□ 2.95
SMPD3-202ENST00000561749 MINK1Q8N4C8 1332 aaPredicted RBP33.44■■■□□ 2.94
SMPD3-202ENST00000561749 C1orf167Q5SNV9 1468 aa33.44■■■□□ 2.94
SMPD3-202ENST00000561749 PHLPP1O60346 1717 aa33.42■■■□□ 2.94
SMPD3-202ENST00000561749 NUTM2FA1L443 756 aa33.42■■■□□ 2.94
SMPD3-202ENST00000561749 BRINP3Q76B58 766 aa33.41■■■□□ 2.94
SMPD3-202ENST00000561749 HIRIP3Q9BW71 556 aaPredicted RBP33.41■■■□□ 2.94
SMPD3-202ENST00000561749 RGPD8O14715 1765 aaPredicted RBP33.41■■■□□ 2.94
SMPD3-202ENST00000561749 ADGRB2O60241 1585 aa33.4■■■□□ 2.94
SMPD3-202ENST00000561749 RALGAPBQ86X10 1494 aa33.4■■■□□ 2.94
SMPD3-202ENST00000561749 QRICH2Q9H0J4 1663 aa33.37■■■□□ 2.93
SMPD3-202ENST00000561749 ORAI2Q96SN7 254 aa33.35■■■□□ 2.93
SMPD3-202ENST00000561749 GPRASP1Q5JY77 1395 aa33.34■■■□□ 2.93
SMPD3-202ENST00000561749 NHSL1Q5SYE7 1610 aa33.33■■■□□ 2.93
SMPD3-202ENST00000561749 AHDC1Q5TGY3 1603 aaPredicted RBP33.33■■■□□ 2.93
SMPD3-202ENST00000561749 CENPJQ9HC77 1338 aaPredicted RBP33.31■■■□□ 2.92
SMPD3-202ENST00000561749 CARD11Q9BXL7 1154 aa33.31■■■□□ 2.92
SMPD3-202ENST00000561749 TIMELESSQ9UNS1 1208 aa33.31■■■□□ 2.92
SMPD3-202ENST00000561749 COL16A1Q07092 1604 aaPredicted RBP33.31■■■□□ 2.92
SMPD3-202ENST00000561749 USP32Q8NFA0 1604 aa33.31■■■□□ 2.92
SMPD3-202ENST00000561749 DDX17Q92841 729 aaKnown RBP33.3■■■□□ 2.92
SMPD3-202ENST00000561749 ESCO1Q5FWF5 840 aa33.29■■■□□ 2.92
SMPD3-202ENST00000561749 WASLO00401 505 aaPredicted RBP33.26■■■□□ 2.91
SMPD3-202ENST00000561749 TULP4Q9NRJ4 1543 aa33.23■■■□□ 2.91
SMPD3-202ENST00000561749 EIF3AQ14152 1382 aaKnown RBP33.23■■■□□ 2.91
SMPD3-202ENST00000561749 KIF1AQ12756 1690 aa33.22■■■□□ 2.91
SMPD3-202ENST00000561749 ANKARQ7Z5J8 1434 aa33.2■■■□□ 2.91
SMPD3-202ENST00000561749 PRR36Q9H6K5 1346 aa33.2■■■□□ 2.91
SMPD3-202ENST00000561749 CDK19Q9BWU1 502 aa33.19■■■□□ 2.9
SMPD3-202ENST00000561749 ITSN1Q15811 1721 aa33.17■■■□□ 2.9
SMPD3-202ENST00000561749 FOXO3O43524 673 aa33.15■■■□□ 2.9
SMPD3-202ENST00000561749 PHF8Q9UPP1 1060 aa33.15■■■□□ 2.9
SMPD3-202ENST00000561749 ATP7BP35670 1465 aa33.14■■■□□ 2.9
SMPD3-202ENST00000561749 XPCQ01831 940 aaPredicted RBP33.14■■■□□ 2.9
SMPD3-202ENST00000561749 PMFBP1Q8TBY8 1022 aa33.12■■■□□ 2.89
SMPD3-202ENST00000561749 TOPAZ1Q8N9V7 1692 aa33.12■■■□□ 2.89
SMPD3-202ENST00000561749 SHPRHQ149N8 1683 aa33.11■■■□□ 2.89
SMPD3-202ENST00000561749 NPHP3Q7Z494 1330 aa33.11■■■□□ 2.89
SMPD3-202ENST00000561749 SRPK2P78362 688 aaKnown RBP33.11■■■□□ 2.89
SMPD3-202ENST00000561749 NUDT16Q96DE0 195 aaKnown RBP33.11■■■□□ 2.89
SMPD3-202ENST00000561749 JCADQ9P266 1359 aa33.1■■■□□ 2.89
SMPD3-202ENST00000561749 CABP2Q9NPB3 220 aa33.1■■■□□ 2.89
SMPD3-202ENST00000561749 PXDNQ92626 1479 aa33.1■■■□□ 2.89
SMPD3-202ENST00000561749 SOS2Q07890 1332 aaPredicted RBP33.09■■■□□ 2.89
SMPD3-202ENST00000561749 MED1Q15648 1581 aaPredicted RBP33.08■■■□□ 2.89
SMPD3-202ENST00000561749 EVC2Q86UK5 1308 aa33.06■■■□□ 2.88
SMPD3-202ENST00000561749 USP47Q96K76 1375 aa33.06■■■□□ 2.88
SMPD3-202ENST00000561749 LRRC59Q96AG4 307 aaKnown RBP33.05■■■□□ 2.88
SMPD3-202ENST00000561749 ST20-MTHFSA0A0A6YYL1 179 aa33.04■■■□□ 2.88
SMPD3-202ENST00000561749 SBNO2Q9Y2G9 1366 aa33.02■■■□□ 2.88
SMPD3-202ENST00000561749 KRT28Q7Z3Y7 464 aa33.02■■■□□ 2.88
SMPD3-202ENST00000561749 PNPLA6Q8IY17 1366 aa33■■■□□ 2.87
SMPD3-202ENST00000561749 PSME1Q06323 249 aa32.99■■■□□ 2.87
SMPD3-202ENST00000561749 NGDNQ8NEJ9 315 aaKnown RBP32.99■■■□□ 2.87
SMPD3-202ENST00000561749 CCDC61Q9Y6R9 512 aa32.99■■■□□ 2.87
SMPD3-202ENST00000561749 PPIP5K1Q6PFW1 1433 aa32.98■■■□□ 2.87
SMPD3-202ENST00000561749 TRPM3Q9HCF6 1732 aaPredicted RBP32.97■■■□□ 2.87
SMPD3-202ENST00000561749 TESK2Q96S53 571 aa32.95■■■□□ 2.87
SMPD3-202ENST00000561749 NUTM2BA6NNL0 878 aaPredicted RBP32.94■■■□□ 2.86
SMPD3-202ENST00000561749 NUTM2EB1AL46 878 aaPredicted RBP32.94■■■□□ 2.86
SMPD3-202ENST00000561749 NUTM2AQ8IVF1 878 aaPredicted RBP32.94■■■□□ 2.86
SMPD3-202ENST00000561749 LRP6O75581 1613 aa32.94■■■□□ 2.86
SMPD3-202ENST00000561749 SPATA31A6Q5VVP1 1343 aa32.93■■■□□ 2.86
SMPD3-202ENST00000561749 ACEP12821 1306 aa32.92■■■□□ 2.86
SMPD3-202ENST00000561749 COL22A1Q8NFW1 1626 aaPredicted RBP32.91■■■□□ 2.86
SMPD3-202ENST00000561749 PLEKHG3A1L390 1219 aa32.91■■■□□ 2.86
SMPD3-202ENST00000561749 SPATA31A3Q5VYP0 1347 aa32.91■■■□□ 2.86
SMPD3-202ENST00000561749 DISP3Q9P2K9 1392 aa32.91■■■□□ 2.86
SMPD3-202ENST00000561749 CABP1Q9NZU7 370 aa32.9■■■□□ 2.86
SMPD3-202ENST00000561749 TNS3Q68CZ2 1445 aa32.9■■■□□ 2.86
SMPD3-202ENST00000561749 POLR3AO14802 1390 aaPredicted RBP32.89■■■□□ 2.86
SMPD3-202ENST00000561749 SBNO1A3KN83 1393 aa32.88■■■□□ 2.85
SMPD3-202ENST00000561749 LMOD2Q6P5Q4 547 aa32.88■■■□□ 2.85
SMPD3-202ENST00000561749 ATAD2Q6PL18 1390 aa32.87■■■□□ 2.85
SMPD3-202ENST00000561749 ALS2Q96Q42 1657 aa32.87■■■□□ 2.85
SMPD3-202ENST00000561749 PLEKHG5O94827 1062 aa32.86■■■□□ 2.85
SMPD3-202ENST00000561749 AKAP12Q02952 1782 aa32.84■■■□□ 2.85
SMPD3-202ENST00000561749 PAK3O75914 559 aaPredicted RBP32.84■■■□□ 2.85
SMPD3-202ENST00000561749 MEX3CQ5U5Q3 659 aaKnown RBP32.83■■■□□ 2.85
SMPD3-202ENST00000561749 PHF23Q9BUL5 403 aaPredicted RBP32.83■■■□□ 2.85
SMPD3-202ENST00000561749 HSPA5P11021 654 aaKnown RBP32.8■■■□□ 2.84
SMPD3-202ENST00000561749 EIF4G2P78344 907 aaKnown RBP eCLIP32.8■■■□□ 2.84
SMPD3-202ENST00000561749 ABCA3Q99758 1704 aa32.8■■■□□ 2.84
SMPD3-202ENST00000561749 TMF1P82094 1093 aa32.79■■■□□ 2.84
SMPD3-202ENST00000561749 TMC1Q8TDI8 760 aa32.79■■■□□ 2.84
SMPD3-202ENST00000561749 ARHGEF10O15013 1369 aa32.78■■■□□ 2.84
SMPD3-202ENST00000561749 MARF1Q9Y4F3 1742 aaKnown RBP32.77■■■□□ 2.84
SMPD3-202ENST00000561749 ADAMTS2O95450 1211 aa32.77■■■□□ 2.84
SMPD3-202ENST00000561749 SLC24A1O60721 1099 aa32.76■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms