RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 USP21Q9UK80 565 aa28.42■■■□□ 2.14
VPS35-202ENST00000561713 CCDC144AA2RUR9 1427 aa28.4■■■□□ 2.14
VPS35-202ENST00000561713 ESCO1Q5FWF5 840 aa28.37■■■□□ 2.13
VPS35-202ENST00000561713 FNBP4Q8N3X1 1017 aaPredicted RBP28.37■■■□□ 2.13
VPS35-202ENST00000561713 TRPC5Q9UL62 973 aaPredicted RBP28.37■■■□□ 2.13
VPS35-202ENST00000561713 COL22A1Q8NFW1 1626 aaPredicted RBP28.35■■■□□ 2.13
VPS35-202ENST00000561713 SPATA31E1Q6ZUB1 1445 aa28.35■■■□□ 2.13
VPS35-202ENST00000561713 MPHOSPH9Q99550 1183 aa28.34■■■□□ 2.13
VPS35-202ENST00000561713 EP400Q96L91 3159 aa28.33■■■□□ 2.13
VPS35-202ENST00000561713 ATAD2Q6PL18 1390 aa28.33■■■□□ 2.13
VPS35-202ENST00000561713 CDC42BPGQ6DT37 1551 aa28.33■■■□□ 2.12
VPS35-202ENST00000561713 XPCQ01831 940 aaPredicted RBP28.32■■■□□ 2.12
VPS35-202ENST00000561713 NPHP3Q7Z494 1330 aa28.32■■■□□ 2.12
VPS35-202ENST00000561713 ADGRF5Q8IZF2 1346 aa28.32■■■□□ 2.12
VPS35-202ENST00000561713 ATRNO75882 1429 aa28.32■■■□□ 2.12
VPS35-202ENST00000561713 MYOM2P54296 1465 aa28.31■■■□□ 2.12
VPS35-202ENST00000561713 PXDNQ92626 1479 aa28.31■■■□□ 2.12
VPS35-202ENST00000561713 FOXO3O43524 673 aa28.3■■■□□ 2.12
VPS35-202ENST00000561713 RGL3Q3MIN7 710 aa28.3■■■□□ 2.12
VPS35-202ENST00000561713 STK26Q9P289 416 aa28.3■■■□□ 2.12
VPS35-202ENST00000561713 WAPLQ7Z5K2 1190 aa28.29■■■□□ 2.12
VPS35-202ENST00000561713 NUTM2FA1L443 756 aa28.28■■■□□ 2.12
VPS35-202ENST00000561713 KNDC1Q76NI1 1749 aa28.28■■■□□ 2.12
VPS35-202ENST00000561713 BCL9LQ86UU0 1499 aa28.27■■■□□ 2.12
VPS35-202ENST00000561713 RAB3GAP2Q9H2M9 1393 aa28.24■■■□□ 2.11
VPS35-202ENST00000561713 TECPR2O15040 1411 aa28.24■■■□□ 2.11
VPS35-202ENST00000561713 TMEM132EQ6IEE7 984 aa28.23■■■□□ 2.11
VPS35-202ENST00000561713 LRPPRCP42704 1394 aaKnown RBP28.23■■■□□ 2.11
VPS35-202ENST00000561713 PLEKHH1Q9ULM0 1364 aa28.23■■■□□ 2.11
VPS35-202ENST00000561713 PIK3C2GO75747 1445 aa28.22■■■□□ 2.11
VPS35-202ENST00000561713 MARF1Q9Y4F3 1742 aaKnown RBP28.21■■■□□ 2.11
VPS35-202ENST00000561713 ABCC11Q96J66 1382 aa28.2■■■□□ 2.1
VPS35-202ENST00000561713 ANKRD30BQ9BXX2 1392 aa28.2■■■□□ 2.1
VPS35-202ENST00000561713 GJD4Q96KN9 370 aaPredicted RBP28.18■■■□□ 2.1
VPS35-202ENST00000561713 FMN2Q9NZ56 1722 aa28.14■■■□□ 2.1
VPS35-202ENST00000561713 SPATA31A3Q5VYP0 1347 aa28.14■■■□□ 2.09
VPS35-202ENST00000561713 YTHDC2Q9H6S0 1430 aaKnown RBP28.13■■■□□ 2.09
VPS35-202ENST00000561713 ZRANB1Q9UGI0 708 aa28.13■■■□□ 2.09
VPS35-202ENST00000561713 UNC5CLQ8IV45 518 aa28.12■■■□□ 2.09
VPS35-202ENST00000561713 NRXN1Q9ULB1 1477 aa28.11■■■□□ 2.09
VPS35-202ENST00000561713 KRT28Q7Z3Y7 464 aa28.11■■■□□ 2.09
VPS35-202ENST00000561713 CCDC125Q86Z20 511 aa28.11■■■□□ 2.09
VPS35-202ENST00000561713 SLIT2O94813 1529 aa28.1■■■□□ 2.09
VPS35-202ENST00000561713 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.09■■■□□ 2.09
VPS35-202ENST00000561713 RALGAPBQ86X10 1494 aa28.09■■■□□ 2.09
VPS35-202ENST00000561713 RGPD8O14715 1765 aaPredicted RBP28.09■■■□□ 2.09
VPS35-202ENST00000561713 KIF1AQ12756 1690 aa28.09■■■□□ 2.09
VPS35-202ENST00000561713 GLI3P10071 1580 aa28.07■■■□□ 2.08
VPS35-202ENST00000561713 USP32Q8NFA0 1604 aa28.05■■■□□ 2.08
VPS35-202ENST00000561713 SIRT1Q96EB6 747 aa28.05■■■□□ 2.08
VPS35-202ENST00000561713 C14orf93Q9H972 538 aaKnown RBP28.05■■■□□ 2.08
VPS35-202ENST00000561713 CABLES1Q8TDN4 633 aa28.04■■■□□ 2.08
VPS35-202ENST00000561713 PHF8Q9UPP1 1060 aa28.04■■■□□ 2.08
VPS35-202ENST00000561713 PLEKHG5O94827 1062 aa28.03■■■□□ 2.08
VPS35-202ENST00000561713 HAP1P54257 671 aaPredicted RBP28.02■■■□□ 2.08
VPS35-202ENST00000561713 CFAP70Q5T0N1 1121 aa28.02■■■□□ 2.08
VPS35-202ENST00000561713 TNS3Q68CZ2 1445 aa28.01■■■□□ 2.08
VPS35-202ENST00000561713 PSME1Q06323 249 aa28.01■■■□□ 2.07
VPS35-202ENST00000561713 ACIN1Q9UKV3 1341 aaKnown RBP28■■■□□ 2.07
VPS35-202ENST00000561713 SAFB2Q14151 953 aaKnown RBP eCLIP28■■■□□ 2.07
VPS35-202ENST00000561713 DHX57Q6P158 1386 aaKnown RBP27.99■■■□□ 2.07
VPS35-202ENST00000561713 BRWD3Q6RI45 1802 aa27.98■■■□□ 2.07
VPS35-202ENST00000561713 SEPT12Q8IYM1 358 aa27.98■■■□□ 2.07
VPS35-202ENST00000561713 PRAM1Q96QH2 718 aa27.98■■■□□ 2.07
VPS35-202ENST00000561713 BLMP54132 1417 aaPredicted RBP27.98■■■□□ 2.07
VPS35-202ENST00000561713 VPS72Q15906 364 aa27.97■■■□□ 2.07
VPS35-202ENST00000561713 LMOD2Q6P5Q4 547 aa27.97■■■□□ 2.07
VPS35-202ENST00000561713 ADGRB1O14514 1584 aa27.97■■■□□ 2.07
VPS35-202ENST00000561713 SBNO1A3KN83 1393 aa27.95■■■□□ 2.06
VPS35-202ENST00000561713 DEFB132Q7Z7B7 95 aa27.94■■■□□ 2.06
VPS35-202ENST00000561713 PLCH1Q4KWH8 1693 aa27.94■■■□□ 2.06
VPS35-202ENST00000561713 PMFBP1Q8TBY8 1022 aa27.93■■■□□ 2.06
VPS35-202ENST00000561713 CCDC9Q9Y3X0 531 aaKnown RBP27.93■■■□□ 2.06
VPS35-202ENST00000561713 DLC1Q96QB1 1528 aa27.92■■■□□ 2.06
VPS35-202ENST00000561713 ARHGEF10O15013 1369 aa27.91■■■□□ 2.06
VPS35-202ENST00000561713 FAM83GA6ND36 823 aa27.91■■■□□ 2.06
VPS35-202ENST00000561713 ONECUT3O60422 494 aaPredicted RBP27.91■■■□□ 2.06
VPS35-202ENST00000561713 ABCA3Q99758 1704 aa27.91■■■□□ 2.06
VPS35-202ENST00000561713 ADGRB2O60241 1585 aa27.9■■■□□ 2.06
VPS35-202ENST00000561713 NWD2Q9ULI1 1742 aa27.9■■■□□ 2.06
VPS35-202ENST00000561713 POGKQ9P215 609 aa27.9■■■□□ 2.06
VPS35-202ENST00000561713 SF3B2Q13435 895 aaKnown RBP27.88■■■□□ 2.05
VPS35-202ENST00000561713 ARHGEF28Q8N1W1 1705 aaKnown RBP27.88■■■□□ 2.05
VPS35-202ENST00000561713 KDM2AQ9Y2K7 1162 aa27.88■■■□□ 2.05
VPS35-202ENST00000561713 KRT27Q7Z3Y8 459 aa27.87■■■□□ 2.05
VPS35-202ENST00000561713 ANKARQ7Z5J8 1434 aa27.86■■■□□ 2.05
VPS35-202ENST00000561713 HIRIP3Q9BW71 556 aaPredicted RBP27.85■■■□□ 2.05
VPS35-202ENST00000561713 DCAF11Q8TEB1 546 aa27.84■■■□□ 2.05
VPS35-202ENST00000561713 TRAK1Q9UPV9 953 aa27.83■■■□□ 2.05
VPS35-202ENST00000561713 TRPM3Q9HCF6 1732 aaPredicted RBP27.81■■■□□ 2.04
VPS35-202ENST00000561713 A0A0G2JS52 829 aa27.81■■■□□ 2.04
VPS35-202ENST00000561713 MYT1Q01538 1121 aa27.81■■■□□ 2.04
VPS35-202ENST00000561713 BTG4Q9NY30 223 aa27.81■■■□□ 2.04
VPS35-202ENST00000561713 FAM98CQ17RN3 349 aaKnown RBP27.8■■■□□ 2.04
VPS35-202ENST00000561713 MINK1Q8N4C8 1332 aaPredicted RBP27.8■■■□□ 2.04
VPS35-202ENST00000561713 PRR36Q9H6K5 1346 aa27.79■■■□□ 2.04
VPS35-202ENST00000561713 NRAPQ86VF7 1730 aa27.78■■■□□ 2.04
VPS35-202ENST00000561713 GPRASP1Q5JY77 1395 aa27.77■■■□□ 2.04
VPS35-202ENST00000561713 ALS2Q96Q42 1657 aa27.77■■■□□ 2.04
VPS35-202ENST00000561713 HRCP23327 699 aa27.75■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms